; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0005787 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005787
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr01:10592381..10593061
RNA-Seq ExpressionPI0005787
SyntenyPI0005787
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039128.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]9.5e-6662.11Show/hide
Query:  MLEMKKAFDRLSEDLKEGSSYRKREES-RTSDGSTMKLKGKLNESEITREMGGGTVDRSKYKKLEMPLFVGENPESWVYRAEHFFEIDELNETEKVKVVV
        +LEMKKA DRL++++KE  SY+K+EES  TSDGS MKLKGK++E++   E+ G   DRSKYKKLEMP+F+GENP+SWVYRAEHFFEI+ L E+EKVKV V
Subjt:  MLEMKKAFDRLSEDLKEGSSYRKREES-RTSDGSTMKLKGKLNESEITREMGGGTVDRSKYKKLEMPLFVGENPESWVYRAEHFFEIDELNETEKVKVVV

Query:  VRFGQDEINWFRWSNNRKKVESWADLKERMFDHFRD--------------QD-------------------IAESVLKDAFVTRLEPALQAEVVSRHPQT
        V FGQDE++W+RWS+NRKKVESW DLK RMF+ FRD              QD                   +AESVL DAFVT LEP+LQAEV+SRHPQT
Subjt:  VRFGQDEINWFRWSNNRKKVESWADLKERMFDHFRD--------------QD-------------------IAESVLKDAFVTRLEPALQAEVVSRHPQT

Query:  LEACMREAQLVNDRNLALKLAASELSL
        LE CMREAQLVNDRNLALKL+  EL +
Subjt:  LEACMREAQLVNDRNLALKLAASELSL

KAA0055376.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-6560.79Show/hide
Query:  MLEMKKAFDRLSEDLKEGSSYRKREES-RTSDGSTMKLKGKLNESEITREMGGGTVDRSKYKKLEMPLFVGENPESWVYRAEHFFEIDELNETEKVKVVV
        +LEMKKA +RL++++KE  SY+K+EES  TSDGS MKLKGK++E+E   E+ G   DR+KYKKLEMP+F+GENPESWVYRAEHFFEI+ L+E+EKVKV V
Subjt:  MLEMKKAFDRLSEDLKEGSSYRKREES-RTSDGSTMKLKGKLNESEITREMGGGTVDRSKYKKLEMPLFVGENPESWVYRAEHFFEIDELNETEKVKVVV

Query:  VRFGQDEINWFRWSNNRKKVESWADLKERMFDHFRDQD---------------------------------IAESVLKDAFVTRLEPALQAEVVSRHPQT
        V FGQDE++W+RWS+NRKKVESW DLK RMF+ FRD                                   +AESVL DAFVT LEP+LQAEV+SRHPQT
Subjt:  VRFGQDEINWFRWSNNRKKVESWADLKERMFDHFRDQD---------------------------------IAESVLKDAFVTRLEPALQAEVVSRHPQT

Query:  LEACMREAQLVNDRNLALKLAASELSL
        LE CMREAQLVNDRN ALKL+  EL +
Subjt:  LEACMREAQLVNDRNLALKLAASELSL

KAA0061073.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]7.3e-6661.23Show/hide
Query:  MLEMKKAFDRLSEDLKEGSSYRKREES-RTSDGSTMKLKGKLNESEITREMGGGTVDRSKYKKLEMPLFVGENPESWVYRAEHFFEIDELNETEKVKVVV
        +LEMKKA +RL++++KE  SY+K+EES  TSDGS MKLKGK++E+E   E+ G   DRSKYKKLEMP+F+GENPESWVYRAEHFFEI+ L+E+EKVKV V
Subjt:  MLEMKKAFDRLSEDLKEGSSYRKREES-RTSDGSTMKLKGKLNESEITREMGGGTVDRSKYKKLEMPLFVGENPESWVYRAEHFFEIDELNETEKVKVVV

Query:  VRFGQDEINWFRWSNNRKKVESWADLKERMFDHFRDQD---------------------------------IAESVLKDAFVTRLEPALQAEVVSRHPQT
        V FGQDE++W+RWS+NRKKVESW DLK RMF+ FRD                                   +AESVL DAFVT LEP+LQAEV+SRHPQT
Subjt:  VRFGQDEINWFRWSNNRKKVESWADLKERMFDHFRDQD---------------------------------IAESVLKDAFVTRLEPALQAEVVSRHPQT

Query:  LEACMREAQLVNDRNLALKLAASELSL
        LE CMREAQLVNDRN ALKL+  EL +
Subjt:  LEACMREAQLVNDRNLALKLAASELSL

TYJ99303.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-6560.79Show/hide
Query:  MLEMKKAFDRLSEDLKEGSSYRKREES-RTSDGSTMKLKGKLNESEITREMGGGTVDRSKYKKLEMPLFVGENPESWVYRAEHFFEIDELNETEKVKVVV
        +LEMKKA +RL++++KE  SY+K+EES  TSDGS MKLKGK++E+E   E+ G   DR+KYKKLEMP+F+GENPESWVYRAEHFFEI+ L+E+EKVKV V
Subjt:  MLEMKKAFDRLSEDLKEGSSYRKREES-RTSDGSTMKLKGKLNESEITREMGGGTVDRSKYKKLEMPLFVGENPESWVYRAEHFFEIDELNETEKVKVVV

Query:  VRFGQDEINWFRWSNNRKKVESWADLKERMFDHFRDQD---------------------------------IAESVLKDAFVTRLEPALQAEVVSRHPQT
        V FGQDE++W+RWS+NRKKVESW DLK RMF+ FRD                                   +AESVL DAFVT LEP+LQAEV+SRHPQT
Subjt:  VRFGQDEINWFRWSNNRKKVESWADLKERMFDHFRDQD---------------------------------IAESVLKDAFVTRLEPALQAEVVSRHPQT

Query:  LEACMREAQLVNDRNLALKLAASELSL
        LE CMREAQLVNDRN ALKL+  EL +
Subjt:  LEACMREAQLVNDRNLALKLAASELSL

TYK04121.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]3.6e-6561.61Show/hide
Query:  MLEMKKAFDRLSEDLKEGSSYRKREES-RTSDGSTMKLKGKLNESEITREMGGGTVDRSKYKKLEMPLFVGENPESWVYRAEHFFEIDELNETEKVKVVV
        +LEMKKA +RL++++KE  SY+K+EES  TSDGS MKLKGK++E+E   E+ G   DRSKYKKLEMP+F+GENPESWVYRAEHFFEI+ L E+EKVKV V
Subjt:  MLEMKKAFDRLSEDLKEGSSYRKREES-RTSDGSTMKLKGKLNESEITREMGGGTVDRSKYKKLEMPLFVGENPESWVYRAEHFFEIDELNETEKVKVVV

Query:  VRFGQDEINWFRWSNNRKKVESWADLKERMFDHFRDQD---------------------------------IAESVLKDAFVTRLEPALQAEVVSRHPQT
        V FGQDE++W+RWS+NRKKVESW DLK RMF+ FRD                                   +AESVL DAFVT LEP+LQAEV+SRHPQT
Subjt:  VRFGQDEINWFRWSNNRKKVESWADLKERMFDHFRDQD---------------------------------IAESVLKDAFVTRLEPALQAEVVSRHPQT

Query:  LEACMREAQLVNDRNLALKLAASE
        LE CMREAQLVNDRN ALKL+  E
Subjt:  LEACMREAQLVNDRNLALKLAASE

TrEMBL top hitse value%identityAlignment
A0A5A7T8C0 Ty3/gypsy retrotransposon protein4.6e-6662.11Show/hide
Query:  MLEMKKAFDRLSEDLKEGSSYRKREES-RTSDGSTMKLKGKLNESEITREMGGGTVDRSKYKKLEMPLFVGENPESWVYRAEHFFEIDELNETEKVKVVV
        +LEMKKA DRL++++KE  SY+K+EES  TSDGS MKLKGK++E++   E+ G   DRSKYKKLEMP+F+GENP+SWVYRAEHFFEI+ L E+EKVKV V
Subjt:  MLEMKKAFDRLSEDLKEGSSYRKREES-RTSDGSTMKLKGKLNESEITREMGGGTVDRSKYKKLEMPLFVGENPESWVYRAEHFFEIDELNETEKVKVVV

Query:  VRFGQDEINWFRWSNNRKKVESWADLKERMFDHFRD--------------QD-------------------IAESVLKDAFVTRLEPALQAEVVSRHPQT
        V FGQDE++W+RWS+NRKKVESW DLK RMF+ FRD              QD                   +AESVL DAFVT LEP+LQAEV+SRHPQT
Subjt:  VRFGQDEINWFRWSNNRKKVESWADLKERMFDHFRD--------------QD-------------------IAESVLKDAFVTRLEPALQAEVVSRHPQT

Query:  LEACMREAQLVNDRNLALKLAASELSL
        LE CMREAQLVNDRNLALKL+  EL +
Subjt:  LEACMREAQLVNDRNLALKLAASELSL

A0A5A7UM77 Ty3/gypsy retrotransposon protein7.9e-6660.79Show/hide
Query:  MLEMKKAFDRLSEDLKEGSSYRKREES-RTSDGSTMKLKGKLNESEITREMGGGTVDRSKYKKLEMPLFVGENPESWVYRAEHFFEIDELNETEKVKVVV
        +LEMKKA +RL++++KE  SY+K+EES  TSDGS MKLKGK++E+E   E+ G   DR+KYKKLEMP+F+GENPESWVYRAEHFFEI+ L+E+EKVKV V
Subjt:  MLEMKKAFDRLSEDLKEGSSYRKREES-RTSDGSTMKLKGKLNESEITREMGGGTVDRSKYKKLEMPLFVGENPESWVYRAEHFFEIDELNETEKVKVVV

Query:  VRFGQDEINWFRWSNNRKKVESWADLKERMFDHFRDQD---------------------------------IAESVLKDAFVTRLEPALQAEVVSRHPQT
        V FGQDE++W+RWS+NRKKVESW DLK RMF+ FRD                                   +AESVL DAFVT LEP+LQAEV+SRHPQT
Subjt:  VRFGQDEINWFRWSNNRKKVESWADLKERMFDHFRDQD---------------------------------IAESVLKDAFVTRLEPALQAEVVSRHPQT

Query:  LEACMREAQLVNDRNLALKLAASELSL
        LE CMREAQLVNDRN ALKL+  EL +
Subjt:  LEACMREAQLVNDRNLALKLAASELSL

A0A5A7UYM1 Ty3/gypsy retrotransposon protein3.5e-6661.23Show/hide
Query:  MLEMKKAFDRLSEDLKEGSSYRKREES-RTSDGSTMKLKGKLNESEITREMGGGTVDRSKYKKLEMPLFVGENPESWVYRAEHFFEIDELNETEKVKVVV
        +LEMKKA +RL++++KE  SY+K+EES  TSDGS MKLKGK++E+E   E+ G   DRSKYKKLEMP+F+GENPESWVYRAEHFFEI+ L+E+EKVKV V
Subjt:  MLEMKKAFDRLSEDLKEGSSYRKREES-RTSDGSTMKLKGKLNESEITREMGGGTVDRSKYKKLEMPLFVGENPESWVYRAEHFFEIDELNETEKVKVVV

Query:  VRFGQDEINWFRWSNNRKKVESWADLKERMFDHFRDQD---------------------------------IAESVLKDAFVTRLEPALQAEVVSRHPQT
        V FGQDE++W+RWS+NRKKVESW DLK RMF+ FRD                                   +AESVL DAFVT LEP+LQAEV+SRHPQT
Subjt:  VRFGQDEINWFRWSNNRKKVESWADLKERMFDHFRDQD---------------------------------IAESVLKDAFVTRLEPALQAEVVSRHPQT

Query:  LEACMREAQLVNDRNLALKLAASELSL
        LE CMREAQLVNDRN ALKL+  EL +
Subjt:  LEACMREAQLVNDRNLALKLAASELSL

A0A5D3BJ50 Ty3/gypsy retrotransposon protein6.0e-6660.79Show/hide
Query:  MLEMKKAFDRLSEDLKEGSSYRKREES-RTSDGSTMKLKGKLNESEITREMGGGTVDRSKYKKLEMPLFVGENPESWVYRAEHFFEIDELNETEKVKVVV
        +LEMKKA +RL++++KE  SY+K+EES  TSDGS MKLKGK++E+E   E+ G   DR+KYKKLEMP+F+GENPESWVYRAEHFFEI+ L+E+EKVKV V
Subjt:  MLEMKKAFDRLSEDLKEGSSYRKREES-RTSDGSTMKLKGKLNESEITREMGGGTVDRSKYKKLEMPLFVGENPESWVYRAEHFFEIDELNETEKVKVVV

Query:  VRFGQDEINWFRWSNNRKKVESWADLKERMFDHFRDQD---------------------------------IAESVLKDAFVTRLEPALQAEVVSRHPQT
        V FGQDE++W+RWS+NRKKVESW DLK RMF+ FRD                                   +AESVL DAFVT LEP+LQAEV+SRHPQT
Subjt:  VRFGQDEINWFRWSNNRKKVESWADLKERMFDHFRDQD---------------------------------IAESVLKDAFVTRLEPALQAEVVSRHPQT

Query:  LEACMREAQLVNDRNLALKLAASELSL
        LE CMREAQLVNDRN ALKL+  EL +
Subjt:  LEACMREAQLVNDRNLALKLAASELSL

A0A5D3BWN1 Retrotransposable element Tf21.8e-6561.61Show/hide
Query:  MLEMKKAFDRLSEDLKEGSSYRKREES-RTSDGSTMKLKGKLNESEITREMGGGTVDRSKYKKLEMPLFVGENPESWVYRAEHFFEIDELNETEKVKVVV
        +LEMKKA +RL++++KE  SY+K+EES  TSDGS MKLKGK++E+E   E+ G   DRSKYKKLEMP+F+GENPESWVYRAEHFFEI+ L E+EKVKV V
Subjt:  MLEMKKAFDRLSEDLKEGSSYRKREES-RTSDGSTMKLKGKLNESEITREMGGGTVDRSKYKKLEMPLFVGENPESWVYRAEHFFEIDELNETEKVKVVV

Query:  VRFGQDEINWFRWSNNRKKVESWADLKERMFDHFRDQD---------------------------------IAESVLKDAFVTRLEPALQAEVVSRHPQT
        V FGQDE++W+RWS+NRKKVESW DLK RMF+ FRD                                   +AESVL DAFVT LEP+LQAEV+SRHPQT
Subjt:  VRFGQDEINWFRWSNNRKKVESWADLKERMFDHFRDQD---------------------------------IAESVLKDAFVTRLEPALQAEVVSRHPQT

Query:  LEACMREAQLVNDRNLALKLAASE
        LE CMREAQLVNDRN ALKL+  E
Subjt:  LEACMREAQLVNDRNLALKLAASE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGGAAATGAAGAAGGCTTTCGATCGGTTGTCTGAAGACCTGAAGGAGGGAAGTTCTTACAGAAAAAGGGAGGAATCGAGAACATCCGATGGTTCCACCATGAAGCT
GAAGGGGAAGTTGAACGAATCTGAGATTACTAGGGAGATGGGTGGAGGGACAGTGGATAGAAGTAAGTATAAAAAGCTGGAAATGCCCTTGTTCGTGGGGGAGAATCCAG
AATCCTGGGTGTATAGGGCTGAACACTTTTTTGAGATTGATGAACTGAATGAAACAGAGAAGGTAAAGGTCGTGGTTGTTCGTTTCGGACAGGATGAAATCAACTGGTTT
AGGTGGTCCAACAACAGAAAAAAGGTTGAATCGTGGGCTGACTTGAAGGAAAGGATGTTTGATCATTTCAGAGACCAAGACATAGCGGAAAGTGTGCTTAAAGACGCCTT
TGTAACTAGGCTAGAACCGGCTCTGCAAGCTGAAGTGGTGAGCCGTCATCCTCAAACGTTAGAGGCATGTATGAGGGAGGCACAATTGGTCAATGACAGGAATTTGGCGT
TAAAGTTGGCTGCATCTGAGTTAAGTTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGCTGGAAATGAAGAAGGCTTTCGATCGGTTGTCTGAAGACCTGAAGGAGGGAAGTTCTTACAGAAAAAGGGAGGAATCGAGAACATCCGATGGTTCCACCATGAAGCT
GAAGGGGAAGTTGAACGAATCTGAGATTACTAGGGAGATGGGTGGAGGGACAGTGGATAGAAGTAAGTATAAAAAGCTGGAAATGCCCTTGTTCGTGGGGGAGAATCCAG
AATCCTGGGTGTATAGGGCTGAACACTTTTTTGAGATTGATGAACTGAATGAAACAGAGAAGGTAAAGGTCGTGGTTGTTCGTTTCGGACAGGATGAAATCAACTGGTTT
AGGTGGTCCAACAACAGAAAAAAGGTTGAATCGTGGGCTGACTTGAAGGAAAGGATGTTTGATCATTTCAGAGACCAAGACATAGCGGAAAGTGTGCTTAAAGACGCCTT
TGTAACTAGGCTAGAACCGGCTCTGCAAGCTGAAGTGGTGAGCCGTCATCCTCAAACGTTAGAGGCATGTATGAGGGAGGCACAATTGGTCAATGACAGGAATTTGGCGT
TAAAGTTGGCTGCATCTGAGTTAAGTTTATAA
Protein sequenceShow/hide protein sequence
MLEMKKAFDRLSEDLKEGSSYRKREESRTSDGSTMKLKGKLNESEITREMGGGTVDRSKYKKLEMPLFVGENPESWVYRAEHFFEIDELNETEKVKVVVVRFGQDEINWF
RWSNNRKKVESWADLKERMFDHFRDQDIAESVLKDAFVTRLEPALQAEVVSRHPQTLEACMREAQLVNDRNLALKLAASELSL