; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0005797 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005797
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr12:13016034..13018682
RNA-Seq ExpressionPI0005797
SyntenyPI0005797
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031754.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.3e-5980.67Show/hide
Query:  MTSRGNTSKALSDIGKKPNTRSRSREAQSSEDMPLFEVAKNIWEELSKPPKGGIIIKENPVIDEHGSSSECSSEEMPHPNIMSVMVIDVDTSEDRMAELE
        MTS+GNTSKALSDIGK+PNTRSRSRE QSSEDMP F+VAKNIWE++SKPPKGGI+IKENP IDEH S SE S+EE+P PNIMS+MV DVDTSEDRMAELE
Subjt:  MTSRGNTSKALSDIGKKPNTRSRSREAQSSEDMPLFEVAKNIWEELSKPPKGGIIIKENPVIDEHGSSSECSSEEMPHPNIMSVMVIDVDTSEDRMAELE

Query:  KKVNMLLKAIEKRDYEIASLKNHIESRDAAESSHTYAIKNKDKGKAILQK
        KKVNML+K +E+RD+EIA LKNHIESRDAAESSHT+ IKN +KGKAI+Q+
Subjt:  KKVNMLLKAIEKRDYEIASLKNHIESRDAAESSHTYAIKNKDKGKAILQK

KAA0031754.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.1e-0265Show/hide
Query:  RTFYSKEEEKQVEDADEGWTLVTRQKKHKQKFSQNESRLY
        RT   KEEEKQV++ +EGWTLVT +KK KQ FSQ ES  Y
Subjt:  RTFYSKEEEKQVEDADEGWTLVTRQKKHKQKFSQNESRLY

KAA0031754.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.3e-5981.33Show/hide
Query:  MTSRGNTSKALSDIGKKPNTRSRSREAQSSEDMPLFEVAKNIWEELSKPPKGGIIIKENPVIDEHGSSSECSSEEMPHPNIMSVMVIDVDTSEDRMAELE
        MTS+GNTSKALSDIGK+PNTRSRSRE QSSEDMP FEVAKNIWE++SKPPKGGI+IKEN  IDEH SSS+ SSEEMPHPNIMSVMV +VDTSE+RMAELE
Subjt:  MTSRGNTSKALSDIGKKPNTRSRSREAQSSEDMPLFEVAKNIWEELSKPPKGGIIIKENPVIDEHGSSSECSSEEMPHPNIMSVMVIDVDTSEDRMAELE

Query:  KKVNMLLKAIEKRDYEIASLKNHIESRDAAESSHTYAIKNKDKGKAILQK
        KKVNML+K +E+RDYEIA LKNHIESRDAAESSH + +KN DKGKA++Q+
Subjt:  KKVNMLLKAIEKRDYEIASLKNHIESRDAAESSHTYAIKNKDKGKAILQK

KAA0034095.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.8e-6082Show/hide
Query:  MTSRGNTSKALSDIGKKPNTRSRSREAQSSEDMPLFEVAKNIWEELSKPPKGGIIIKENPVIDEHGSSSECSSEEMPHPNIMSVMVIDVDTSEDRMAELE
        MTS+GNTSKALSDIGK+PNTRSRSRE QSSEDMP FEVAKNIWE++SKPPKGGI+IKENP IDE+ S SECS+EE+P PNIMSVMV DVDTSEDRMAELE
Subjt:  MTSRGNTSKALSDIGKKPNTRSRSREAQSSEDMPLFEVAKNIWEELSKPPKGGIIIKENPVIDEHGSSSECSSEEMPHPNIMSVMVIDVDTSEDRMAELE

Query:  KKVNMLLKAIEKRDYEIASLKNHIESRDAAESSHTYAIKNKDKGKAILQK
        KKVNML+KA+E+RD+EIA LKNHIESRDAAESSHT+ +KN +KGKAI+Q+
Subjt:  KKVNMLLKAIEKRDYEIASLKNHIESRDAAESSHTYAIKNKDKGKAILQK

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]3.1e-5981.33Show/hide
Query:  MTSRGNTSKALSDIGKKPNTRSRSREAQSSEDMPLFEVAKNIWEELSKPPKGGIIIKENPVIDEHGSSSECSSEEMPHPNIMSVMVIDVDTSEDRMAELE
        MTS+GNTSKALSDIGK+PNTRSRSRE QSSEDMP F+VAKNIWE++SKPPKGGI+IKENP +DEH S SE S+EE+P PNIMSVMV DVDTSEDRMAELE
Subjt:  MTSRGNTSKALSDIGKKPNTRSRSREAQSSEDMPLFEVAKNIWEELSKPPKGGIIIKENPVIDEHGSSSECSSEEMPHPNIMSVMVIDVDTSEDRMAELE

Query:  KKVNMLLKAIEKRDYEIASLKNHIESRDAAESSHTYAIKNKDKGKAILQK
        KKVNML+KA+E+RD+EIA LKNHIESRDAAESSHT+ IKN +KGKAI+Q+
Subjt:  KKVNMLLKAIEKRDYEIASLKNHIESRDAAESSHTYAIKNKDKGKAILQK

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]1.2e-1360Show/hide
Query:  EYKRKGIRKVDADTKPTSEAESHFADAKFYTKGDDISEVISTKVPVAKDTYKPEQATIIIKKTNEVDALN
        ++ ++GI+KVDAD++P ++AESHFADAKFYTK +D+SE+IST+VPV K T+K EQ  I  KK+++ DALN
Subjt:  EYKRKGIRKVDADTKPTSEAESHFADAKFYTKGDDISEVISTKVPVAKDTYKPEQATIIIKKTNEVDALN

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]1.7e-0469.05Show/hide
Query:  KEEEKQVEDADEGWTLVTRQKKHKQKFSQNESRLYREYKRKG
        KEEEKQV++ +EGWTLVTR+KK KQ FSQ ES  YR Y+ KG
Subjt:  KEEEKQVEDADEGWTLVTRQKKHKQKFSQNESRLYREYKRKG

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]4.1e-5981.33Show/hide
Query:  MTSRGNTSKALSDIGKKPNTRSRSREAQSSEDMPLFEVAKNIWEELSKPPKGGIIIKENPVIDEHGSSSECSSEEMPHPNIMSVMVIDVDTSEDRMAELE
        MTS+GNTSKALSDIGK+PNTRSRSRE QSSEDMP FEV KNIWE++SKPPKGGI+IKENP IDEH S SE S+EE+P PNIMSVMV DVDTSEDRMAELE
Subjt:  MTSRGNTSKALSDIGKKPNTRSRSREAQSSEDMPLFEVAKNIWEELSKPPKGGIIIKENPVIDEHGSSSECSSEEMPHPNIMSVMVIDVDTSEDRMAELE

Query:  KKVNMLLKAIEKRDYEIASLKNHIESRDAAESSHTYAIKNKDKGKAILQK
        KKVNML+KA+E++D+EIA LKNHIESRDAAESSHT+ IKN +KGKAI+Q+
Subjt:  KKVNMLLKAIEKRDYEIASLKNHIESRDAAESSHTYAIKNKDKGKAILQK

TrEMBL top hitse value%identityAlignment
A0A5A7SY17 Ty3-gypsy retrotransposon protein1.4e-6082Show/hide
Query:  MTSRGNTSKALSDIGKKPNTRSRSREAQSSEDMPLFEVAKNIWEELSKPPKGGIIIKENPVIDEHGSSSECSSEEMPHPNIMSVMVIDVDTSEDRMAELE
        MTS+GNTSKALSDIGK+PNTRSRSRE QSSEDMP FEVAKNIWE++SKPPKGGI+IKENP IDE+ S SECS+EE+P PNIMSVMV DVDTSEDRMAELE
Subjt:  MTSRGNTSKALSDIGKKPNTRSRSREAQSSEDMPLFEVAKNIWEELSKPPKGGIIIKENPVIDEHGSSSECSSEEMPHPNIMSVMVIDVDTSEDRMAELE

Query:  KKVNMLLKAIEKRDYEIASLKNHIESRDAAESSHTYAIKNKDKGKAILQK
        KKVNML+KA+E+RD+EIA LKNHIESRDAAESSHT+ +KN +KGKAI+Q+
Subjt:  KKVNMLLKAIEKRDYEIASLKNHIESRDAAESSHTYAIKNKDKGKAILQK

A0A5A7TZU9 Ribonuclease H1.5e-5981.33Show/hide
Query:  MTSRGNTSKALSDIGKKPNTRSRSREAQSSEDMPLFEVAKNIWEELSKPPKGGIIIKENPVIDEHGSSSECSSEEMPHPNIMSVMVIDVDTSEDRMAELE
        MTS+GNTSKALSDIGK+PNTRSRSRE QSSEDMP F+VAKNIWE++SKPPKGGI+IKENP +DEH S SE S+EE+P PNIMSVMV DVDTSEDRMAELE
Subjt:  MTSRGNTSKALSDIGKKPNTRSRSREAQSSEDMPLFEVAKNIWEELSKPPKGGIIIKENPVIDEHGSSSECSSEEMPHPNIMSVMVIDVDTSEDRMAELE

Query:  KKVNMLLKAIEKRDYEIASLKNHIESRDAAESSHTYAIKNKDKGKAILQK
        KKVNML+KA+E+RD+EIA LKNHIESRDAAESSHT+ IKN +KGKAI+Q+
Subjt:  KKVNMLLKAIEKRDYEIASLKNHIESRDAAESSHTYAIKNKDKGKAILQK

A0A5A7TZU9 Ribonuclease H5.6e-1460Show/hide
Query:  EYKRKGIRKVDADTKPTSEAESHFADAKFYTKGDDISEVISTKVPVAKDTYKPEQATIIIKKTNEVDALN
        ++ ++GI+KVDAD++P ++AESHFADAKFYTK +D+SE+IST+VPV K T+K EQ  I  KK+++ DALN
Subjt:  EYKRKGIRKVDADTKPTSEAESHFADAKFYTKGDDISEVISTKVPVAKDTYKPEQATIIIKKTNEVDALN

A0A5A7TZU9 Ribonuclease H8.2e-0569.05Show/hide
Query:  KEEEKQVEDADEGWTLVTRQKKHKQKFSQNESRLYREYKRKG
        KEEEKQV++ +EGWTLVTR+KK KQ FSQ ES  YR Y+ KG
Subjt:  KEEEKQVEDADEGWTLVTRQKKHKQKFSQNESRLYREYKRKG

A0A5A7TZU9 Ribonuclease H2.0e-5981.33Show/hide
Query:  MTSRGNTSKALSDIGKKPNTRSRSREAQSSEDMPLFEVAKNIWEELSKPPKGGIIIKENPVIDEHGSSSECSSEEMPHPNIMSVMVIDVDTSEDRMAELE
        MTS+GNTSKALSDIGK+PNTRSRSRE QSSEDMP FEV KNIWE++SKPPKGGI+IKENP IDEH S SE S+EE+P PNIMSVMV DVDTSEDRMAELE
Subjt:  MTSRGNTSKALSDIGKKPNTRSRSREAQSSEDMPLFEVAKNIWEELSKPPKGGIIIKENPVIDEHGSSSECSSEEMPHPNIMSVMVIDVDTSEDRMAELE

Query:  KKVNMLLKAIEKRDYEIASLKNHIESRDAAESSHTYAIKNKDKGKAILQK
        KKVNML+KA+E++D+EIA LKNHIESRDAAESSHT+ IKN +KGKAI+Q+
Subjt:  KKVNMLLKAIEKRDYEIASLKNHIESRDAAESSHTYAIKNKDKGKAILQK

A0A5A7VAV4 Retrotransposon gag protein2.6e-5981.33Show/hide
Query:  MTSRGNTSKALSDIGKKPNTRSRSREAQSSEDMPLFEVAKNIWEELSKPPKGGIIIKENPVIDEHGSSSECSSEEMPHPNIMSVMVIDVDTSEDRMAELE
        MTS+GNTSKALSDIGK+PNTRSRSRE QSSEDMP FEVAKNIWE++SKPPKGGI+IKEN  IDEH SSS+ SSEEMPHPNIMSVMV +VDTSE+RMAELE
Subjt:  MTSRGNTSKALSDIGKKPNTRSRSREAQSSEDMPLFEVAKNIWEELSKPPKGGIIIKENPVIDEHGSSSECSSEEMPHPNIMSVMVIDVDTSEDRMAELE

Query:  KKVNMLLKAIEKRDYEIASLKNHIESRDAAESSHTYAIKNKDKGKAILQK
        KKVNML+K +E+RDYEIA LKNHIESRDAAESSH + +KN DKGKA++Q+
Subjt:  KKVNMLLKAIEKRDYEIASLKNHIESRDAAESSHTYAIKNKDKGKAILQK

A0A5D3CSH0 Ty3-gypsy retrotransposon protein2.6e-5981.33Show/hide
Query:  MTSRGNTSKALSDIGKKPNTRSRSREAQSSEDMPLFEVAKNIWEELSKPPKGGIIIKENPVIDEHGSSSECSSEEMPHPNIMSVMVIDVDTSEDRMAELE
        MTS+GNTSKALSDIGK+PNTRSRSRE QSSEDMP FEVAKNIWE++SKPPKGGI+IKEN  IDEH SSS+ SSEEMPHPNIMSVMV +VDTSE+RMAELE
Subjt:  MTSRGNTSKALSDIGKKPNTRSRSREAQSSEDMPLFEVAKNIWEELSKPPKGGIIIKENPVIDEHGSSSECSSEEMPHPNIMSVMVIDVDTSEDRMAELE

Query:  KKVNMLLKAIEKRDYEIASLKNHIESRDAAESSHTYAIKNKDKGKAILQK
        KKVNML+K +E+RDYEIA LKNHIESRDAAESSH + +KN DKGKA++Q+
Subjt:  KKVNMLLKAIEKRDYEIASLKNHIESRDAAESSHTYAIKNKDKGKAILQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGTCTAGAGGCAACACTTCCAAAGCTCTAAGCGACATCGGTAAAAAGCCAAATACTCGCAGCCGCTCAAGGGAGGCTCAATCGTCTGAGGATATGCCACTCTTTGA
GGTCGCAAAGAATATTTGGGAAGAGCTGTCAAAGCCACCAAAAGGTGGAATTATAATAAAAGAAAATCCTGTGATTGATGAGCACGGTTCGTCCTCTGAATGCTCAAGTG
AGGAGATGCCTCACCCAAATATAATGTCGGTTATGGTGATTGATGTTGATACAAGTGAAGATAGAATGGCGGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAGGCAATT
GAAAAAAGGGATTATGAGATTGCATCCCTGAAAAATCACATTGAAAGTCGTGACGCTGCTGAATCAAGTCACACATATGCCATCAAGAATAAGGACAAAGGGAAGGCGAT
TTTGCAAAAAAGGAGTCTAAACCGAACTTTTTACTCAAAAGAAGAAGAAAAACAGGTGGAGGATGCTGACGAGGGATGGACGCTAGTAACGCGTCAAAAGAAGCATAAAC
AAAAATTTTCTCAAAATGAATCTCGTTTGTACCGAGAGTATAAAAGAAAGGGAATTAGGAAGGTTGATGCTGACACTAAGCCAACTTCAGAGGCTGAGTCTCACTTTGCG
GATGCAAAATTTTACACAAAAGGCGATGATATTAGTGAAGTCATATCGACTAAAGTTCCCGTAGCCAAAGACACTTATAAGCCCGAGCAAGCTACGATCATAATAAAGAA
GACAAATGAAGTGGATGCACTCAATGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACGTCTAGAGGCAACACTTCCAAAGCTCTAAGCGACATCGGTAAAAAGCCAAATACTCGCAGCCGCTCAAGGGAGGCTCAATCGTCTGAGGATATGCCACTCTTTGA
GGTCGCAAAGAATATTTGGGAAGAGCTGTCAAAGCCACCAAAAGGTGGAATTATAATAAAAGAAAATCCTGTGATTGATGAGCACGGTTCGTCCTCTGAATGCTCAAGTG
AGGAGATGCCTCACCCAAATATAATGTCGGTTATGGTGATTGATGTTGATACAAGTGAAGATAGAATGGCGGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAGGCAATT
GAAAAAAGGGATTATGAGATTGCATCCCTGAAAAATCACATTGAAAGTCGTGACGCTGCTGAATCAAGTCACACATATGCCATCAAGAATAAGGACAAAGGGAAGGCGAT
TTTGCAAAAAAGGAGTCTAAACCGAACTTTTTACTCAAAAGAAGAAGAAAAACAGGTGGAGGATGCTGACGAGGGATGGACGCTAGTAACGCGTCAAAAGAAGCATAAAC
AAAAATTTTCTCAAAATGAATCTCGTTTGTACCGAGAGTATAAAAGAAAGGGAATTAGGAAGGTTGATGCTGACACTAAGCCAACTTCAGAGGCTGAGTCTCACTTTGCG
GATGCAAAATTTTACACAAAAGGCGATGATATTAGTGAAGTCATATCGACTAAAGTTCCCGTAGCCAAAGACACTTATAAGCCCGAGCAAGCTACGATCATAATAAAGAA
GACAAATGAAGTGGATGCACTCAATGGTTGA
Protein sequenceShow/hide protein sequence
MTSRGNTSKALSDIGKKPNTRSRSREAQSSEDMPLFEVAKNIWEELSKPPKGGIIIKENPVIDEHGSSSECSSEEMPHPNIMSVMVIDVDTSEDRMAELEKKVNMLLKAI
EKRDYEIASLKNHIESRDAAESSHTYAIKNKDKGKAILQKRSLNRTFYSKEEEKQVEDADEGWTLVTRQKKHKQKFSQNESRLYREYKRKGIRKVDADTKPTSEAESHFA
DAKFYTKGDDISEVISTKVPVAKDTYKPEQATIIIKKTNEVDALNG