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PI0005820 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005820
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag-pro-like protein
Genome locationchr05:16013272..16013616
RNA-Seq ExpressionPI0005820
SyntenyPI0005820
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042502.1 putative RNA-directed DNA polymerase [Cucumis melo var. makuwa]4.8e-4182.46Show/hide
Query:  MEEQDKDIDKMRQKINNLGEQVSKKLELLSMGKGKVVEDTTQSSNPIQDTDDPIYPPRFKPPHMNVPQSQTTQHYVAMNPLFVVPPPVPDIEQLEAQAKI
        M+EQDKD+DKMRQ+INNLGEQVSK LELLSMGKGKVV DTTQSSNPIQDTDDPIYPP F P HMNVPQSQTTQHYV+ N L+ VPP VPDIE LEA AKI
Subjt:  MEEQDKDIDKMRQKINNLGEQVSKKLELLSMGKGKVVEDTTQSSNPIQDTDDPIYPPRFKPPHMNVPQSQTTQHYVAMNPLFVVPPPVPDIEQLEAQAKI

Query:  QDRDKMRTLRLRKN
        QD DK RTLRL K+
Subjt:  QDRDKMRTLRLRKN

KAA0058862.1 Gag-pro-like protein [Cucumis melo var. makuwa]2.9e-3885.29Show/hide
Query:  MEEQDKDIDKMRQKINNLGEQVSKKLELLSMGKGKVVEDTTQSSNPIQDTDDPIYPPRFKPPHMNVPQSQTTQHYVAMNPLFVVPPPVPDIEQLEAQAKI
        MEEQDKD+DKMRQ+INNLGEQVSK LELLSMGKGKVV DTTQSSNP+QDTDDPIY P F P HMNVPQSQTTQHYVA NP++VVPP VP IE LEAQAKI
Subjt:  MEEQDKDIDKMRQKINNLGEQVSKKLELLSMGKGKVVEDTTQSSNPIQDTDDPIYPPRFKPPHMNVPQSQTTQHYVAMNPLFVVPPPVPDIEQLEAQAKI

Query:  QD
        QD
Subjt:  QD

XP_031738857.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402780 [Cucumis sativus]6.5e-3884.31Show/hide
Query:  MEEQDKDIDKMRQKINNLGEQVSKKLELLSMGKGKVVEDTTQSSNPIQDTDDPIYPPRFKPPHMNVPQSQTTQHYVAMNPLFVVPPPVPDIEQLEAQAKI
        MEEQDKD+DKMRQ INNLGEQVSK LELLS GKGKVV +T QSSNP+QDTDDPIYPP F P HMN  QSQT QHYVAMNPLF VPPPVPDIEQLE QAKI
Subjt:  MEEQDKDIDKMRQKINNLGEQVSKKLELLSMGKGKVVEDTTQSSNPIQDTDDPIYPPRFKPPHMNVPQSQTTQHYVAMNPLFVVPPPVPDIEQLEAQAKI

Query:  QD
        QD
Subjt:  QD

XP_031741309.1 LOW QUALITY PROTEIN: uncharacterized protein LOC105435093 [Cucumis sativus]6.5e-3884.31Show/hide
Query:  MEEQDKDIDKMRQKINNLGEQVSKKLELLSMGKGKVVEDTTQSSNPIQDTDDPIYPPRFKPPHMNVPQSQTTQHYVAMNPLFVVPPPVPDIEQLEAQAKI
        MEEQDKD+DKMRQ INNLGEQVSK LELLS GKGKVV +T QSSNP+QDTDDPIYPP F P HMN  QSQT QHYVAMNPLF VPPPVPDIEQLE QAKI
Subjt:  MEEQDKDIDKMRQKINNLGEQVSKKLELLSMGKGKVVEDTTQSSNPIQDTDDPIYPPRFKPPHMNVPQSQTTQHYVAMNPLFVVPPPVPDIEQLEAQAKI

Query:  QD
        QD
Subjt:  QD

XP_031742360.1 uncharacterized protein LOC116404324 [Cucumis sativus]2.2e-3885.29Show/hide
Query:  MEEQDKDIDKMRQKINNLGEQVSKKLELLSMGKGKVVEDTTQSSNPIQDTDDPIYPPRFKPPHMNVPQSQTTQHYVAMNPLFVVPPPVPDIEQLEAQAKI
        MEEQDKD+DKMRQ INNLGEQVSK LELLS GKGKVV +T QSSNP+QDTDDPIYPP F P HMN  QSQT QHYVAMNPLF VPPPVPDIEQLEAQAKI
Subjt:  MEEQDKDIDKMRQKINNLGEQVSKKLELLSMGKGKVVEDTTQSSNPIQDTDDPIYPPRFKPPHMNVPQSQTTQHYVAMNPLFVVPPPVPDIEQLEAQAKI

Query:  QD
        QD
Subjt:  QD

TrEMBL top hitse value%identityAlignment
A0A5A7T0H8 Uncharacterized protein2.7e-3780Show/hide
Query:  MEEQDKDIDKMRQKINNLGEQVSKKLELLSMGKGKVVEDTTQSSNPIQDTDDPIYPPRFKPPHMNVPQSQTTQHYVAMNPLFVVPPPVPDIEQLEAQAKI
        MEE+DKD+DKMRQ+INNLGEQVSK LELLSMGKGK V DT QSSNPIQDTDDPIYPP F P H+NVPQSQTTQHYV  NPL+VVPP +P IE LEAQAKI
Subjt:  MEEQDKDIDKMRQKINNLGEQVSKKLELLSMGKGKVVEDTTQSSNPIQDTDDPIYPPRFKPPHMNVPQSQTTQHYVAMNPLFVVPPPVPDIEQLEAQAKI

Query:  QDRDK
        QD ++
Subjt:  QDRDK

A0A5A7T5W6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein4.5e-3780Show/hide
Query:  MEEQDKDIDKMRQKINNLGEQVSKKLELLSMGKGKVVEDTTQSSNPIQDTDDPIYPPRFKPPHMNVPQSQTTQHYVAMNPLFVVPPPVPDIEQLEAQAKI
        MEE+DKD+DKMRQ+INNLGEQVSK LELLSMGKGK V DT QSSNPIQDTDDPIYPP F P H+NVPQSQTTQHYV  NPL+VVPP +P IE LEAQAKI
Subjt:  MEEQDKDIDKMRQKINNLGEQVSKKLELLSMGKGKVVEDTTQSSNPIQDTDDPIYPPRFKPPHMNVPQSQTTQHYVAMNPLFVVPPPVPDIEQLEAQAKI

Query:  QDRDK
        QD ++
Subjt:  QDRDK

A0A5A7TGG5 Putative RNA-directed DNA polymerase2.3e-4182.46Show/hide
Query:  MEEQDKDIDKMRQKINNLGEQVSKKLELLSMGKGKVVEDTTQSSNPIQDTDDPIYPPRFKPPHMNVPQSQTTQHYVAMNPLFVVPPPVPDIEQLEAQAKI
        M+EQDKD+DKMRQ+INNLGEQVSK LELLSMGKGKVV DTTQSSNPIQDTDDPIYPP F P HMNVPQSQTTQHYV+ N L+ VPP VPDIE LEA AKI
Subjt:  MEEQDKDIDKMRQKINNLGEQVSKKLELLSMGKGKVVEDTTQSSNPIQDTDDPIYPPRFKPPHMNVPQSQTTQHYVAMNPLFVVPPPVPDIEQLEAQAKI

Query:  QDRDKMRTLRLRKN
        QD DK RTLRL K+
Subjt:  QDRDKMRTLRLRKN

A0A5A7USL0 Gag-pro-like protein1.4e-3885.29Show/hide
Query:  MEEQDKDIDKMRQKINNLGEQVSKKLELLSMGKGKVVEDTTQSSNPIQDTDDPIYPPRFKPPHMNVPQSQTTQHYVAMNPLFVVPPPVPDIEQLEAQAKI
        MEEQDKD+DKMRQ+INNLGEQVSK LELLSMGKGKVV DTTQSSNP+QDTDDPIY P F P HMNVPQSQTTQHYVA NP++VVPP VP IE LEAQAKI
Subjt:  MEEQDKDIDKMRQKINNLGEQVSKKLELLSMGKGKVVEDTTQSSNPIQDTDDPIYPPRFKPPHMNVPQSQTTQHYVAMNPLFVVPPPVPDIEQLEAQAKI

Query:  QD
        QD
Subjt:  QD

A0A5A7V3W7 Retrotrans_gag domain-containing protein1.6e-3781.37Show/hide
Query:  MEEQDKDIDKMRQKINNLGEQVSKKLELLSMGKGKVVEDTTQSSNPIQDTDDPIYPPRFKPPHMNVPQSQTTQHYVAMNPLFVVPPPVPDIEQLEAQAKI
        MEE+DKD+DKMRQ+INN+GEQVSK LELLSMGKGKV  DTTQSSNPIQDTDDPIYPP F P HMNVPQSQTTQHY+  +PL+VVPP VP +E LEAQAKI
Subjt:  MEEQDKDIDKMRQKINNLGEQVSKKLELLSMGKGKVVEDTTQSSNPIQDTDDPIYPPRFKPPHMNVPQSQTTQHYVAMNPLFVVPPPVPDIEQLEAQAKI

Query:  QD
        QD
Subjt:  QD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAACAAGACAAAGACATAGATAAAATGAGACAAAAGATTAATAATCTTGGGGAACAAGTTTCAAAAAAACTAGAATTGCTTTCAATGGGAAAAGGAAAAGTCGT
TGAAGATACAACACAATCAAGCAATCCAATTCAGGACACCGATGATCCCATTTATCCTCCAAGGTTTAAGCCACCTCACATGAATGTTCCGCAGTCTCAAACCACTCAAC
ACTATGTTGCTATGAATCCACTTTTTGTTGTTCCACCTCCTGTCCCAGATATAGAGCAATTGGAAGCTCAAGCTAAAATTCAAGACAGGGACAAAATGAGAACACTCCGG
CTAAGGAAAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAACAAGACAAAGACATAGATAAAATGAGACAAAAGATTAATAATCTTGGGGAACAAGTTTCAAAAAAACTAGAATTGCTTTCAATGGGAAAAGGAAAAGTCGT
TGAAGATACAACACAATCAAGCAATCCAATTCAGGACACCGATGATCCCATTTATCCTCCAAGGTTTAAGCCACCTCACATGAATGTTCCGCAGTCTCAAACCACTCAAC
ACTATGTTGCTATGAATCCACTTTTTGTTGTTCCACCTCCTGTCCCAGATATAGAGCAATTGGAAGCTCAAGCTAAAATTCAAGACAGGGACAAAATGAGAACACTCCGG
CTAAGGAAAAACTAG
Protein sequenceShow/hide protein sequence
MEEQDKDIDKMRQKINNLGEQVSKKLELLSMGKGKVVEDTTQSSNPIQDTDDPIYPPRFKPPHMNVPQSQTTQHYVAMNPLFVVPPPVPDIEQLEAQAKIQDRDKMRTLR
LRKN