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PI0005822 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005822
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr01:18733253..18734195
RNA-Seq ExpressionPI0005822
SyntenyPI0005822
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035966.1 F5J5.1 [Cucumis melo var. makuwa]1.2e-2044.93Show/hide
Query:  SSQSSTSHPSFSFELSDTDLDEQNNVDVGSFIFSQLLKHVGYFGVKIPIPFPRFLSSLLLHQHSEILLASDAPSPAPKTLSLSYRLFQGSHAPDLASSNQ
        +S  S +  +F +++ + D      VD G FI++QLL+HVG FGVK+PI FPR  SSLLLH +  +L  SDAP P PKT++L YRLFQGSH PD+     
Subjt:  SSQSSTSHPSFSFELSDTDLDEQNNVDVGSFIFSQLLKHVGYFGVKIPIPFPRFLSSLLLHQHSEILLASDAPSPAPKTLSLSYRLFQGSHAPDLASSNQ

Query:  PSAERH-------DISNVGVHISPSLTSRLIDLLAAES
        P+   H       D S  G +++  L +R+I+ L AES
Subjt:  PSAERH-------DISNVGVHISPSLTSRLIDLLAAES

KAA0053468.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.5e-2049.14Show/hide
Query:  CIPECRPFGKSSIAG-----KSSQSSTSHPSFSFELSDTDLDEQNNVDVGSFIFSQLLKHVGYFGVKIPIPFPRFLSSLLLHQHSEILLASDAPSPAPKT
        C P C P  K  IA       +S  S++  +F +++S+ D      VD G+FI++QL +HVG FGVK+PI  PRF SSLLLH + ++  A+DAP P PKT
Subjt:  CIPECRPFGKSSIAG-----KSSQSSTSHPSFSFELSDTDLDEQNNVDVGSFIFSQLLKHVGYFGVKIPIPFPRFLSSLLLHQHSEILLASDAPSPAPKT

Query:  LSLSYRLFQGSHAPDL
        ++LSYRLFQGSH PD+
Subjt:  LSLSYRLFQGSHAPDL

TYK19884.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.5e-2049.14Show/hide
Query:  CIPECRPFGKSSIAG-----KSSQSSTSHPSFSFELSDTDLDEQNNVDVGSFIFSQLLKHVGYFGVKIPIPFPRFLSSLLLHQHSEILLASDAPSPAPKT
        C P C P  K  IA       +S  S++  +F +++S+ D      VD G+FI++QL +HVG FGVK+PI  PRF SSLLLH + ++  A+DAP P PKT
Subjt:  CIPECRPFGKSSIAG-----KSSQSSTSHPSFSFELSDTDLDEQNNVDVGSFIFSQLLKHVGYFGVKIPIPFPRFLSSLLLHQHSEILLASDAPSPAPKT

Query:  LSLSYRLFQGSHAPDL
        ++LSYRLFQGSH PD+
Subjt:  LSLSYRLFQGSHAPDL

TYK30437.1 F5J5.1 [Cucumis melo var. makuwa]1.2e-2044.93Show/hide
Query:  SSQSSTSHPSFSFELSDTDLDEQNNVDVGSFIFSQLLKHVGYFGVKIPIPFPRFLSSLLLHQHSEILLASDAPSPAPKTLSLSYRLFQGSHAPDLASSNQ
        +S  S +  +F +++ + D      VD G FI++QLL+HVG FGVK+PI FPR  SSLLLH +  +L  SDAP P PKT++L YRLFQGSH PD+     
Subjt:  SSQSSTSHPSFSFELSDTDLDEQNNVDVGSFIFSQLLKHVGYFGVKIPIPFPRFLSSLLLHQHSEILLASDAPSPAPKTLSLSYRLFQGSHAPDLASSNQ

Query:  PSAERH-------DISNVGVHISPSLTSRLIDLLAAES
        P+   H       D S  G +++  L +R+I+ L AES
Subjt:  PSAERH-------DISNVGVHISPSLTSRLIDLLAAES

XP_008456217.1 PREDICTED: uncharacterized protein LOC103496220 [Cucumis melo]5.2e-2152.17Show/hide
Query:  NNVDVGSFIFSQLLKHVGYFGVKIPIPFPRFLSSLLLHQHSEILLASDAPSPAPKTLSLSYRLFQGSHAPDLASSNQPS-------AERHDISNVGVHIS
        + VD G+FI++QLL+HVG FGVK+PI  PRF S LLLH ++ IL  SDAP P PKTLSLSYRLFQGSH PD+     PS           D +  G  + 
Subjt:  NNVDVGSFIFSQLLKHVGYFGVKIPIPFPRFLSSLLLHQHSEILLASDAPSPAPKTLSLSYRLFQGSHAPDLASSNQPS-------AERHDISNVGVHIS

Query:  PSLTSRLIDLLAAES
          L SR+++ L AES
Subjt:  PSLTSRLIDLLAAES

TrEMBL top hitse value%identityAlignment
A0A1S3C400 uncharacterized protein LOC1034962202.5e-2152.17Show/hide
Query:  NNVDVGSFIFSQLLKHVGYFGVKIPIPFPRFLSSLLLHQHSEILLASDAPSPAPKTLSLSYRLFQGSHAPDLASSNQPS-------AERHDISNVGVHIS
        + VD G+FI++QLL+HVG FGVK+PI  PRF S LLLH ++ IL  SDAP P PKTLSLSYRLFQGSH PD+     PS           D +  G  + 
Subjt:  NNVDVGSFIFSQLLKHVGYFGVKIPIPFPRFLSSLLLHQHSEILLASDAPSPAPKTLSLSYRLFQGSHAPDLASSNQPS-------AERHDISNVGVHIS

Query:  PSLTSRLIDLLAAES
          L SR+++ L AES
Subjt:  PSLTSRLIDLLAAES

A0A5A7T169 F5J5.15.7e-2144.93Show/hide
Query:  SSQSSTSHPSFSFELSDTDLDEQNNVDVGSFIFSQLLKHVGYFGVKIPIPFPRFLSSLLLHQHSEILLASDAPSPAPKTLSLSYRLFQGSHAPDLASSNQ
        +S  S +  +F +++ + D      VD G FI++QLL+HVG FGVK+PI FPR  SSLLLH +  +L  SDAP P PKT++L YRLFQGSH PD+     
Subjt:  SSQSSTSHPSFSFELSDTDLDEQNNVDVGSFIFSQLLKHVGYFGVKIPIPFPRFLSSLLLHQHSEILLASDAPSPAPKTLSLSYRLFQGSHAPDLASSNQ

Query:  PSAERH-------DISNVGVHISPSLTSRLIDLLAAES
        P+   H       D S  G +++  L +R+I+ L AES
Subjt:  PSAERH-------DISNVGVHISPSLTSRLIDLLAAES

A0A5A7UEJ0 Gag-pol polyprotein7.4e-2149.14Show/hide
Query:  CIPECRPFGKSSIAG-----KSSQSSTSHPSFSFELSDTDLDEQNNVDVGSFIFSQLLKHVGYFGVKIPIPFPRFLSSLLLHQHSEILLASDAPSPAPKT
        C P C P  K  IA       +S  S++  +F +++S+ D      VD G+FI++QL +HVG FGVK+PI  PRF SSLLLH + ++  A+DAP P PKT
Subjt:  CIPECRPFGKSSIAG-----KSSQSSTSHPSFSFELSDTDLDEQNNVDVGSFIFSQLLKHVGYFGVKIPIPFPRFLSSLLLHQHSEILLASDAPSPAPKT

Query:  LSLSYRLFQGSHAPDL
        ++LSYRLFQGSH PD+
Subjt:  LSLSYRLFQGSHAPDL

A0A5D3D8L4 Gag-pol polyprotein7.4e-2149.14Show/hide
Query:  CIPECRPFGKSSIAG-----KSSQSSTSHPSFSFELSDTDLDEQNNVDVGSFIFSQLLKHVGYFGVKIPIPFPRFLSSLLLHQHSEILLASDAPSPAPKT
        C P C P  K  IA       +S  S++  +F +++S+ D      VD G+FI++QL +HVG FGVK+PI  PRF SSLLLH + ++  A+DAP P PKT
Subjt:  CIPECRPFGKSSIAG-----KSSQSSTSHPSFSFELSDTDLDEQNNVDVGSFIFSQLLKHVGYFGVKIPIPFPRFLSSLLLHQHSEILLASDAPSPAPKT

Query:  LSLSYRLFQGSHAPDL
        ++LSYRLFQGSH PD+
Subjt:  LSLSYRLFQGSHAPDL

A0A5D3E2Y4 F5J5.15.7e-2144.93Show/hide
Query:  SSQSSTSHPSFSFELSDTDLDEQNNVDVGSFIFSQLLKHVGYFGVKIPIPFPRFLSSLLLHQHSEILLASDAPSPAPKTLSLSYRLFQGSHAPDLASSNQ
        +S  S +  +F +++ + D      VD G FI++QLL+HVG FGVK+PI FPR  SSLLLH +  +L  SDAP P PKT++L YRLFQGSH PD+     
Subjt:  SSQSSTSHPSFSFELSDTDLDEQNNVDVGSFIFSQLLKHVGYFGVKIPIPFPRFLSSLLLHQHSEILLASDAPSPAPKTLSLSYRLFQGSHAPDLASSNQ

Query:  PSAERH-------DISNVGVHISPSLTSRLIDLLAAES
        P+   H       D S  G +++  L +R+I+ L AES
Subjt:  PSAERH-------DISNVGVHISPSLTSRLIDLLAAES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCTCCACTCGAAAAACTTGTTATTCCTTGCAATCTTTTGAAGTTCCTGTTGATACCAATCCACGATTAAACATGCATGGGGTTCGTCTGCGAGGAGGGGCTCGTTT
CAAATGTATCCCAGAATGTCGTCCTTTTGGGAAATCATCCATCGCTGGTAAGTCTTCTCAGTCGTCTACGTCGCACCCTTCTTTTTCGTTTGAGCTCTCTGATACTGACT
TGGACGAACAAAACAATGTTGATGTCGGTTCTTTTATTTTTTCCCAATTGCTTAAACATGTGGGATATTTTGGAGTCAAAATACCTATTCCTTTTCCGCGTTTTCTGTCC
AGTCTTCTATTACATCAACATTCTGAAATTCTACTTGCCTCTGATGCCCCTAGTCCAGCCCCGAAAACCTTGTCTCTTAGTTACAGACTCTTTCAGGGTTCTCATGCACC
TGATCTTGCTTCATCTAATCAGCCTTCTGCTGAGCGGCATGACATTTCAAATGTTGGGGTACATATTTCTCCATCCTTGACTTCCCGGTTGATTGATCTGTTAGCTGCTG
AATCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCTCCACTCGAAAAACTTGTTATTCCTTGCAATCTTTTGAAGTTCCTGTTGATACCAATCCACGATTAAACATGCATGGGGTTCGTCTGCGAGGAGGGGCTCGTTT
CAAATGTATCCCAGAATGTCGTCCTTTTGGGAAATCATCCATCGCTGGTAAGTCTTCTCAGTCGTCTACGTCGCACCCTTCTTTTTCGTTTGAGCTCTCTGATACTGACT
TGGACGAACAAAACAATGTTGATGTCGGTTCTTTTATTTTTTCCCAATTGCTTAAACATGTGGGATATTTTGGAGTCAAAATACCTATTCCTTTTCCGCGTTTTCTGTCC
AGTCTTCTATTACATCAACATTCTGAAATTCTACTTGCCTCTGATGCCCCTAGTCCAGCCCCGAAAACCTTGTCTCTTAGTTACAGACTCTTTCAGGGTTCTCATGCACC
TGATCTTGCTTCATCTAATCAGCCTTCTGCTGAGCGGCATGACATTTCAAATGTTGGGGTACATATTTCTCCATCCTTGACTTCCCGGTTGATTGATCTGTTAGCTGCTG
AATCTTAA
Protein sequenceShow/hide protein sequence
MVSTRKTCYSLQSFEVPVDTNPRLNMHGVRLRGGARFKCIPECRPFGKSSIAGKSSQSSTSHPSFSFELSDTDLDEQNNVDVGSFIFSQLLKHVGYFGVKIPIPFPRFLS
SLLLHQHSEILLASDAPSPAPKTLSLSYRLFQGSHAPDLASSNQPSAERHDISNVGVHISPSLTSRLIDLLAAES