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PI0005827 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005827
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr08:8288024..8289979
RNA-Seq ExpressionPI0005827
SyntenyPI0005827
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031967.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.7e-5578.57Show/hide
Query:  DRNTVDVAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANV
        DRNTVD AAGGALA+K PTEARELISRMA+NSQ FGNRASEL+NSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KC VC LVGHPNDKCP+++EE N+
Subjt:  DRNTVDVAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANV

Query:  IRKYDPYSNTYNAGWRDNSNLRWGNDNQRPSQTTSSSNNQ
        ++KYDPYSNTYN GWRDN  LRWGNDNQ+ +Q  ++S+NQ
Subjt:  IRKYDPYSNTYNAGWRDNSNLRWGNDNQRPSQTTSSSNNQ
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-5679.29Show/hide
Query:  DRNTVDVAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANV
        DRNTVD  AGGALADK PTEARELIS+MAENSQ+F NRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N+
Subjt:  DRNTVDVAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANV

Query:  IRKYDPYSNTYNAGWRDNSNLRWGNDNQRPSQTTSSSNNQ
        +RKYDP+ NTYN+GWRDN NLRWGNDNQ+ +Q  S+S+NQ
Subjt:  IRKYDPYSNTYNAGWRDNSNLRWGNDNQRPSQTTSSSNNQ
KAA0056048.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.6e-5579.14Show/hide
Query:  RNTVDVAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANVI
        RNTVDVA GGALADKTPTEARELISRMAENSQ+FGNRAS+LDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ NV+
Subjt:  RNTVDVAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANVI

Query:  RKYDPYSNTYNAGWRDNSNLRWGNDNQRPSQTTSSSNNQ
        R+YDP+ NT N+GWRDN N RWGNDNQ+ +Q   +S+NQ
Subjt:  RKYDPYSNTYNAGWRDNSNLRWGNDNQRPSQTTSSSNNQ
KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-5680Show/hide
Query:  DRNTVDVAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANV
        DRNT+DV AGGALADKTPTEARELISRM ENSQ+FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVC LVGHPNDKC  ++E+ N+
Subjt:  DRNTVDVAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANV

Query:  IRKYDPYSNTYNAGWRDNSNLRWGNDNQRPSQTTSSSNNQ
        +R+YDP+SNTYN+GWRDN NLRWGNDNQ+ +Q  S+S+NQ
Subjt:  IRKYDPYSNTYNAGWRDNSNLRWGNDNQRPSQTTSSSNNQ
TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.0e-5781.29Show/hide
Query:  RNTVDVAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANVI
        RNT+DVAAGGALADKTPTEARELISRMAENS++FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVC LVGHPNDKCP ++E+ N++
Subjt:  RNTVDVAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANVI

Query:  RKYDPYSNTYNAGWRDNSNLRWGNDNQRPSQTTSSSNNQ
        R+YDP+SNTYN+GWRDN NLRWGNDNQ+ +Q  S+S+NQ
Subjt:  RKYDPYSNTYNAGWRDNSNLRWGNDNQRPSQTTSSSNNQ
TrEMBL top hitse value%identityAlignment
A0A5A7SRF5 Retrotransposon gag protein1.8e-5578.57Show/hide
Query:  DRNTVDVAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANV
        DRNTVD AAGGALA+K PTEARELISRMA+NSQ FGNRASEL+NSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KC VC LVGHPNDKCP+++EE N+
Subjt:  DRNTVDVAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANV

Query:  IRKYDPYSNTYNAGWRDNSNLRWGNDNQRPSQTTSSSNNQ
        ++KYDPYSNTYN GWRDN  LRWGNDNQ+ +Q  ++S+NQ
Subjt:  IRKYDPYSNTYNAGWRDNSNLRWGNDNQRPSQTTSSSNNQ
A0A5A7ULU1 Retrotransposon gag protein8.0e-5679.14Show/hide
Query:  RNTVDVAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANVI
        RNTVDVA GGALADKTPTEARELISRMAENSQ+FGNRAS+LDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ NV+
Subjt:  RNTVDVAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANVI

Query:  RKYDPYSNTYNAGWRDNSNLRWGNDNQRPSQTTSSSNNQ
        R+YDP+ NT N+GWRDN N RWGNDNQ+ +Q   +S+NQ
Subjt:  RKYDPYSNTYNAGWRDNSNLRWGNDNQRPSQTTSSSNNQ
A0A5A7V0Q7 Retrotransposon gag protein5.5e-5780Show/hide
Query:  DRNTVDVAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANV
        DRNT+DV AGGALADKTPTEARELISRM ENSQ+FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVC LVGHPNDKC  ++E+ N+
Subjt:  DRNTVDVAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANV

Query:  IRKYDPYSNTYNAGWRDNSNLRWGNDNQRPSQTTSSSNNQ
        +R+YDP+SNTYN+GWRDN NLRWGNDNQ+ +Q  S+S+NQ
Subjt:  IRKYDPYSNTYNAGWRDNSNLRWGNDNQRPSQTTSSSNNQ
A0A5D3CB46 Retrotransposon gag protein1.4e-5781.29Show/hide
Query:  RNTVDVAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANVI
        RNT+DVAAGGALADKTPTEARELISRMAENS++FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVC LVGHPNDKCP ++E+ N++
Subjt:  RNTVDVAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANVI

Query:  RKYDPYSNTYNAGWRDNSNLRWGNDNQRPSQTTSSSNNQ
        R+YDP+SNTYN+GWRDN NLRWGNDNQ+ +Q  S+S+NQ
Subjt:  RKYDPYSNTYNAGWRDNSNLRWGNDNQRPSQTTSSSNNQ
A0A5D3CRR8 Retrotransposon gag protein5.5e-5779.29Show/hide
Query:  DRNTVDVAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANV
        DRNTVD  AGGALADK PTEARELIS+MAENSQ+F NRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N+
Subjt:  DRNTVDVAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANV

Query:  IRKYDPYSNTYNAGWRDNSNLRWGNDNQRPSQTTSSSNNQ
        +RKYDP+ NTYN+GWRDN NLRWGNDNQ+ +Q  S+S+NQ
Subjt:  IRKYDPYSNTYNAGWRDNSNLRWGNDNQRPSQTTSSSNNQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGAAATACAGTAGACGTTGCAGCAGGTGGTGCTTTGGCTGACAAAACCCCTACTGAAGCTAGAGAGCTCATTTCAAGGATGGCTGAAAATTCACAAAATTTTGG
CAACAGAGCATCCGAGCTCGACAATTCATTGACTAAGGAGGTAAGTGAACTCAAATCACAAATGCTTAATATGACTACTCTACTAACTTCTTTTGTGCAAGGTGGATCTG
TTAAAGTTGCAAAGTGTGGGGTGTGCAGTCTAGTTGGACATCCTAATGATAAGTGCCCTGACTTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTTATAGCAAT
ACTTACAATGCCGGTTGGAGAGACAACTCCAATCTGAGATGGGGAAACGACAACCAAAGACCCTCGCAAACAACCTCCTCTTCAAACAATCAAGACTGCATGCGAGGAGA
TGCTGAGCTTGGCGAGCTGAATCAGCTGAATGAGAATTGCGAGCTGGTGAATGAGCATGCATATGCGGCGAGGCAAAGGTGTACTTCTGCAGATGATGTACTTCGCAAGG
CTCAAGTCAGAAGGCAATGCCTTGCGGTGAAGGCAGGTTGCGATGAGCCATGCGATGCTAAAGTGATTTTGCCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATAGAAATACAGTAGACGTTGCAGCAGGTGGTGCTTTGGCTGACAAAACCCCTACTGAAGCTAGAGAGCTCATTTCAAGGATGGCTGAAAATTCACAAAATTTTGG
CAACAGAGCATCCGAGCTCGACAATTCATTGACTAAGGAGGTAAGTGAACTCAAATCACAAATGCTTAATATGACTACTCTACTAACTTCTTTTGTGCAAGGTGGATCTG
TTAAAGTTGCAAAGTGTGGGGTGTGCAGTCTAGTTGGACATCCTAATGATAAGTGCCCTGACTTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTTATAGCAAT
ACTTACAATGCCGGTTGGAGAGACAACTCCAATCTGAGATGGGGAAACGACAACCAAAGACCCTCGCAAACAACCTCCTCTTCAAACAATCAAGACTGCATGCGAGGAGA
TGCTGAGCTTGGCGAGCTGAATCAGCTGAATGAGAATTGCGAGCTGGTGAATGAGCATGCATATGCGGCGAGGCAAAGGTGTACTTCTGCAGATGATGTACTTCGCAAGG
CTCAAGTCAGAAGGCAATGCCTTGCGGTGAAGGCAGGTTGCGATGAGCCATGCGATGCTAAAGTGATTTTGCCGTGA
Protein sequenceShow/hide protein sequence
MDRNTVDVAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNDKCPDLVEEANVIRKYDPYSN
TYNAGWRDNSNLRWGNDNQRPSQTTSSSNNQDCMRGDAELGELNQLNENCELVNEHAYAARQRCTSADDVLRKAQVRRQCLAVKAGCDEPCDAKVILP