CuGenDBv2

Gene ID	PI0005835
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ribonuclease H
Genome location	chr10:3350405..3350854
RNA-Seq Expression	PI0005835
Synteny	PI0005835
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function) GO:0008233 - peptidase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0046253.1 uncharacterized protein E6C27_scaffold284G00560 [Cucumis melo var. makuwa]

4.5e-47

70.32

Show/hide

Query:  MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVA
        ++K  AK+IEK+ LEA LPE+RT+EGFDPKAY+LMAKAGYDFTT TE KS KIFD+R  LSPTQ+KLQKQ Y IPNSR  +GY+SSEPVRITGKGKAKVA
Subjt:  MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVA

Query:  DTCHITVEECNDSKEDKKNETQRSSVFDRITSSTTRSSVFIECT-----DKGGQK
        +TCHITVEE  DSKE KK+ +QRSSVFDRI  ST R SVF   +     DKG  K
Subjt:  DTCHITVEECNDSKEDKKNETQRSSVFDRITSSTTRSSVFIECT-----DKGGQK

KAA0060609.1 uncharacterized protein E6C27_scaffold22G004870 [Cucumis melo var. makuwa]

2.6e-47

74.29

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Query:  MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVA
        ++K  AK+IEK+ LEA LPE+RT+EGFDPKAY+LMAKAGYDFTT TE KS KIFDER  LSPTQ+KLQKQ Y IPNSR G+GY+SSEP+RITGKGKAKV 
Subjt:  MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVA

Query:  DTCHITVEECNDSKEDKKNETQRSSVFDRITSSTTRSSVF
        +TCHITVEE  DSKE KK+ +QRSSVFDRI  S  R SVF
Subjt:  DTCHITVEECNDSKEDKKNETQRSSVFDRITSSTTRSSVF

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]

1.3e-46

74.29

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Query:  MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVA
        ++K  AK+IEK+ L+A LPE+RT+EGFDPKAY+LMAKAGYDFTT TE KS KIFDER  LSPTQ+KLQKQ Y IPNSR G+GY+SSEPVRITGKGKAKVA
Subjt:  MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVA

Query:  DTCHITVEECNDSKEDKKNETQRSSVFDRITSSTTRSSVF
        +TCHITVEE  DS+E KK  +QRSSVFDRI  S  R SVF
Subjt:  DTCHITVEECNDSKEDKKNETQRSSVFDRITSSTTRSSVF

TYK02262.1 uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa]

2.6e-47

74.29

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Query:  MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVA
        ++K  AK+IEK+ LEA LPE+RT+EGFDPKAY+LMAKAGYDFTT TE KS KIFDER  LSPTQ+KLQKQ Y IPNSR G+GY+SSEP+RITGKGKAKV 
Subjt:  MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVA

Query:  DTCHITVEECNDSKEDKKNETQRSSVFDRITSSTTRSSVF
        +TCHITVEE  DSKE KK+ +QRSSVFDRI  S  R SVF
Subjt:  DTCHITVEECNDSKEDKKNETQRSSVFDRITSSTTRSSVF

TYK18947.1 uncharacterized protein E5676_scaffold418G00310 [Cucumis melo var. makuwa]

4.5e-47

70.32

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Query:  MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVA
        ++K  AK+IEK+ LEA LPE+RT+EGFDPKAY+LMAKAGYDFTT TE KS KIFD+R  LSPTQ+KLQKQ Y IPNSR  +GY+SSEPVRITGKGKAKVA
Subjt:  MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVA

Query:  DTCHITVEECNDSKEDKKNETQRSSVFDRITSSTTRSSVFIECT-----DKGGQK
        +TCHITVEE  DSKE KK+ +QRSSVFDRI  ST R SVF   +     DKG  K
Subjt:  DTCHITVEECNDSKEDKKNETQRSSVFDRITSSTTRSSVFIECT-----DKGGQK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TRQ6 RNase H domain-containing protein

2.2e-47

70.32

Show/hide

Query:  MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVA
        ++K  AK+IEK+ LEA LPE+RT+EGFDPKAY+LMAKAGYDFTT TE KS KIFD+R  LSPTQ+KLQKQ Y IPNSR  +GY+SSEPVRITGKGKAKVA
Subjt:  MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVA

Query:  DTCHITVEECNDSKEDKKNETQRSSVFDRITSSTTRSSVFIECT-----DKGGQK
        +TCHITVEE  DSKE KK+ +QRSSVFDRI  ST R SVF   +     DKG  K
Subjt:  DTCHITVEECNDSKEDKKNETQRSSVFDRITSSTTRSSVFIECT-----DKGGQK

A0A5A7TZU9 Ribonuclease H

6.3e-47

74.29

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Query:  MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVA
        ++K  AK+IEK+ L+A LPE+RT+EGFDPKAY+LMAKAGYDFTT TE KS KIFDER  LSPTQ+KLQKQ Y IPNSR G+GY+SSEPVRITGKGKAKVA
Subjt:  MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVA

Query:  DTCHITVEECNDSKEDKKNETQRSSVFDRITSSTTRSSVF
        +TCHITVEE  DS+E KK  +QRSSVFDRI  S  R SVF
Subjt:  DTCHITVEECNDSKEDKKNETQRSSVFDRITSSTTRSSVF

A0A5A7V4F2 Reverse transcriptase domain-containing protein

1.3e-47

74.29

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Query:  MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVA
        ++K  AK+IEK+ LEA LPE+RT+EGFDPKAY+LMAKAGYDFTT TE KS KIFDER  LSPTQ+KLQKQ Y IPNSR G+GY+SSEP+RITGKGKAKV 
Subjt:  MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVA

Query:  DTCHITVEECNDSKEDKKNETQRSSVFDRITSSTTRSSVF
        +TCHITVEE  DSKE KK+ +QRSSVFDRI  S  R SVF
Subjt:  DTCHITVEECNDSKEDKKNETQRSSVFDRITSSTTRSSVF

A0A5D3BTY1 Ribonuclease H

1.3e-47

74.29

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Query:  MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVA
        ++K  AK+IEK+ LEA LPE+RT+EGFDPKAY+LMAKAGYDFTT TE KS KIFDER  LSPTQ+KLQKQ Y IPNSR G+GY+SSEP+RITGKGKAKV 
Subjt:  MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVA

Query:  DTCHITVEECNDSKEDKKNETQRSSVFDRITSSTTRSSVF
        +TCHITVEE  DSKE KK+ +QRSSVFDRI  S  R SVF
Subjt:  DTCHITVEECNDSKEDKKNETQRSSVFDRITSSTTRSSVF

A0A5D3D5V8 RNase H domain-containing protein

2.2e-47

70.32

Show/hide

Query:  MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVA
        ++K  AK+IEK+ LEA LPE+RT+EGFDPKAY+LMAKAGYDFTT TE KS KIFD+R  LSPTQ+KLQKQ Y IPNSR  +GY+SSEPVRITGKGKAKVA
Subjt:  MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVA

Query:  DTCHITVEECNDSKEDKKNETQRSSVFDRITSSTTRSSVFIECT-----DKGGQK
        +TCHITVEE  DSKE KK+ +QRSSVFDRI  ST R SVF   +     DKG  K
Subjt:  DTCHITVEECNDSKEDKKNETQRSSVFDRITSSTTRSSVFIECT-----DKGGQK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATAAAAGAGGGGCGAAAAGGATTGAGAAAGAGAGCCTAGAAGCATGCCTTCCAGAAAAACGAACGATGGAAGGATTCGATCCAAAAGCATATAGGTTGATGGCAAA
GGCAGGTTATGACTTTACAACCGGTACCGAGTTCAAAAGCAAGATATTTGATGAAAGGCATGGGCTTTCTCCTACGCAAAGAAAGCTTCAAAAGCAAAGATATTTTATAC
CAAATTCAAGACCAGGAGTTGGGTATAAGTCTTCCGAGCCTGTTCGAATAACTGGTAAAGGAAAAGCAAAAGTTGCTGACACATGCCACATTACTGTTGAAGAATGCAAC
GATTCTAAAGAAGACAAGAAAAACGAAACTCAAAGAAGTTCTGTTTTTGATCGCATCACCTCCTCTACTACACGCTCTTCAGTTTTCATTGAATGTACCGACAAGGGAGG
ACAAAAATGA

mRNA sequence

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Protein sequence

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MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKSKIFDERHGLSPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHITVEECN
DSKEDKKNETQRSSVFDRITSSTTRSSVFIECTDKGGQK

PI0005835 (gene) of Melon (PI 482460) v1 genome