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PI0005848 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005848
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr08:5967063..5967620
RNA-Seq ExpressionPI0005848
SyntenyPI0005848
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043564.1 retrotransposon protein [Cucumis melo var. makuwa]4.1e-2348.94Show/hide
Query:  MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRGSFCSGFDGMKNFNASLQNGSCL------------------
        +VS+GGWRS+N  FR GYLAQLQRMM +KL  TNIQ SL +DCRVKSLKK   +   MRG  CSGF   + F   +                        
Subjt:  MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRGSFCSGFDGMKNFNASLQNGSCL------------------

Query:  -------IVGSRDQATGARAETFADVGSNVSNCFNDDVPLG
                V  +D+AT AR ETFADVGSNV N FND VPLG
Subjt:  -------IVGSRDQATGARAETFADVGSNVSNCFNDDVPLG

KAA0062283.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-2256.36Show/hide
Query:  MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRGSFCSGFDGMKNFNASLQNGS------CLIVGSRDQATGAR
        +VS GGW+SDN  FRPGYLAQL RMM EKL G  ++ +  IDCR+K+L +T+QAI EMRGS CSGF         L N S         V  RD+ATG  
Subjt:  MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRGSFCSGFDGMKNFNASLQNGS------CLIVGSRDQATGAR

Query:  AETFADVGSN
        AETFADVGSN
Subjt:  AETFADVGSN

TYK19779.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-2248.23Show/hide
Query:  MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRGSFCSGFDGMKNFNASLQNGSCL------------------
        +VS+GGWRS+N  FR GYLAQLQRMM +KL  TNIQ SL +DCRVKSLKK   +   +RG  CSGF   + F   +                        
Subjt:  MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRGSFCSGFDGMKNFNASLQNGSCL------------------

Query:  -------IVGSRDQATGARAETFADVGSNVSNCFNDDVPLG
                V  +D+AT AR ETFADVGSNV N FND VPLG
Subjt:  -------IVGSRDQATGARAETFADVGSNVSNCFNDDVPLG

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]5.3e-3156.03Show/hide
Query:  MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRGSFCSGFDGMKNFNASLQNGSCL------------------
        +VSSGGWRSDN  F+PGYLAQLQRMMAEKL GTNIQ S TIDC VKSLKKTY AIAEMRG  CSGF   + F   +                        
Subjt:  MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRGSFCSGFDGMKNFNASLQNGSCL------------------

Query:  -------IVGSRDQATGARAETFADVGSNVSNCFNDDVPLG
                V  +D+ATGAR+ETF +VGSNVSN FND +PLG
Subjt:  -------IVGSRDQATGARAETFADVGSNVSNCFNDDVPLG

XP_031739703.1 uncharacterized protein LOC116403241 [Cucumis sativus]7.7e-2248.09Show/hide
Query:  MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRGSFCSGF--------------------------DGMKNFNA
        +V +GGW+SDN+ FRPGYLAQL RMMA KL G N+  +  IDCR+K+LK++YQAIAEM G  CSGF                          +G+ N + 
Subjt:  MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRGSFCSGF--------------------------DGMKNFNA

Query:  SLQNGSCLIVGSRDQATGARAETFADVGSNV
        S  +    + G +D+ATGA AETFADVGSNV
Subjt:  SLQNGSCLIVGSRDQATGARAETFADVGSNV

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859532.6e-3156.03Show/hide
Query:  MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRGSFCSGFDGMKNFNASLQNGSCL------------------
        +VSSGGWRSDN  F+PGYLAQLQRMMAEKL GTNIQ S TIDC VKSLKKTY AIAEMRG  CSGF   + F   +                        
Subjt:  MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRGSFCSGFDGMKNFNASLQNGSCL------------------

Query:  -------IVGSRDQATGARAETFADVGSNVSNCFNDDVPLG
                V  +D+ATGAR+ETF +VGSNVSN FND +PLG
Subjt:  -------IVGSRDQATGARAETFADVGSNVSNCFNDDVPLG

A0A5A7TJS2 Retrotransposon protein2.0e-2348.94Show/hide
Query:  MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRGSFCSGFDGMKNFNASLQNGSCL------------------
        +VS+GGWRS+N  FR GYLAQLQRMM +KL  TNIQ SL +DCRVKSLKK   +   MRG  CSGF   + F   +                        
Subjt:  MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRGSFCSGFDGMKNFNASLQNGSCL------------------

Query:  -------IVGSRDQATGARAETFADVGSNVSNCFNDDVPLG
                V  +D+AT AR ETFADVGSNV N FND VPLG
Subjt:  -------IVGSRDQATGARAETFADVGSNVSNCFNDDVPLG

A0A5A7U0H7 Retrotransposon protein2.6e-3156.03Show/hide
Query:  MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRGSFCSGFDGMKNFNASLQNGSCL------------------
        +VSSGGWRSDN  F+PGYLAQLQRMMAEKL GTNIQ S TIDC VKSLKKTY AIAEMRG  CSGF   + F   +                        
Subjt:  MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRGSFCSGFDGMKNFNASLQNGSCL------------------

Query:  -------IVGSRDQATGARAETFADVGSNVSNCFNDDVPLG
                V  +D+ATGAR+ETF +VGSNVSN FND +PLG
Subjt:  -------IVGSRDQATGARAETFADVGSNVSNCFNDDVPLG

A0A5A7V2H6 Retrotransposon protein7.5e-2356.36Show/hide
Query:  MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRGSFCSGFDGMKNFNASLQNGS------CLIVGSRDQATGAR
        +VS GGW+SDN  FRPGYLAQL RMM EKL G  ++ +  IDCR+K+L +T+QAI EMRGS CSGF         L N S         V  RD+ATG  
Subjt:  MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRGSFCSGFDGMKNFNASLQNGS------CLIVGSRDQATGAR

Query:  AETFADVGSN
        AETFADVGSN
Subjt:  AETFADVGSN

A0A5D3D8J6 Retrotransposon protein7.5e-2348.23Show/hide
Query:  MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRGSFCSGFDGMKNFNASLQNGSCL------------------
        +VS+GGWRS+N  FR GYLAQLQRMM +KL  TNIQ SL +DCRVKSLKK   +   +RG  CSGF   + F   +                        
Subjt:  MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRGSFCSGFDGMKNFNASLQNGSCL------------------

Query:  -------IVGSRDQATGARAETFADVGSNVSNCFNDDVPLG
                V  +D+AT AR ETFADVGSNV N FND VPLG
Subjt:  -------IVGSRDQATGARAETFADVGSNVSNCFNDDVPLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCATCTGGTGGATGGAGGTCAGATAATGAGATATTTCGACCTGGATACTTGGCACAATTACAACGGATGATGGCGGAGAAGTTGTTTGGTACTAACATCCAAAG
ATCGCTGACTATTGATTGCCGTGTCAAATCCCTTAAAAAAACCTATCAAGCAATTGCAGAAATGAGGGGATCATTCTGTAGTGGGTTTGATGGAATGAAGAATTTCAATG
CATCATTGCAGAACGGGAGTTGTTTGATAGTTGGGTCAAGAGATCAAGCAACAGGAGCACGTGCGGAGACCTTTGCTGACGTGGGATCTAATGTGTCAAATTGTTTTAAT
GACGATGTTCCACTTGGCTATACATCCCGACGATGTATAGCCAAGGAGTGGATATGTCACCAGATGACATGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCATCTGGTGGATGGAGGTCAGATAATGAGATATTTCGACCTGGATACTTGGCACAATTACAACGGATGATGGCGGAGAAGTTGTTTGGTACTAACATCCAAAG
ATCGCTGACTATTGATTGCCGTGTCAAATCCCTTAAAAAAACCTATCAAGCAATTGCAGAAATGAGGGGATCATTCTGTAGTGGGTTTGATGGAATGAAGAATTTCAATG
CATCATTGCAGAACGGGAGTTGTTTGATAGTTGGGTCAAGAGATCAAGCAACAGGAGCACGTGCGGAGACCTTTGCTGACGTGGGATCTAATGTGTCAAATTGTTTTAAT
GACGATGTTCCACTTGGCTATACATCCCGACGATGTATAGCCAAGGAGTGGATATGTCACCAGATGACATGTTAG
Protein sequenceShow/hide protein sequence
MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRGSFCSGFDGMKNFNASLQNGSCLIVGSRDQATGARAETFADVGSNVSNCFN
DDVPLGYTSRRCIAKEWICHQMTC