; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0005864 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005864
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag-pol polyprotein
Genome locationchr06:9037447..9038286
RNA-Seq ExpressionPI0005864
SyntenyPI0005864
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041781.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.3e-1833.07Show/hide
Query:  SKPYDRKRKGERKANNTQNHRYRNFRCRECEGFGHYQVECPNFLRRQNKEFVATLFDGESVTSSDSNDEIRALICCNSTKDNEELDNKVLKVNGSYNEVH
        S  Y +K++G+RK           FRCREC G GHYQ +CP FLR+Q K F  TL D ES+ S D +  I A      T +N + D++ L          
Subjt:  SKPYDRKRKGERKANNTQNHRYRNFRCRECEGFGHYQVECPNFLRRQNKEFVATLFDGESVTSSDSNDEIRALICCNSTKDNEELDNKVLKVNGSYNEVH

Query:  PITHQFENLSVEEIYKKWKEDLCVLDQQMDKILKLFEDNHRLLTIIFYLKKDLKSSRLELKSMSKSVKILNSGTNDLNKILNTWKQVADRNDIGFKKYKY
         +  + + LS+E++   WKED      Q ++I  L E+N RL+++I  LK  LK  + +   + KSVK+LNSGT +L+ IL      + R  +GF     
Subjt:  PITHQFENLSVEEIYKKWKEDLCVLDQQMDKILKLFEDNHRLLTIIFYLKKDLKSSRLELKSMSKSVKILNSGTNDLNKILNTWKQVADRNDIGFKKYKY

Query:  ARDGNTSNNYTLNRNTYPPRGRREND---RQNDVVQIRKNRDLMCRECGGCGHL
             +S+  T          R E D    + D+  + K+    C  CG  GH+
Subjt:  ARDGNTSNNYTLNRNTYPPRGRREND---RQNDVVQIRKNRDLMCRECGGCGHL

KAA0045252.1 gag-proteinase polyprotein [Cucumis melo var. makuwa]3.9e-2033.57Show/hide
Query:  MKFLNKCSGNYISNTNKSSMLKNSKPYDRKRKGERKANNTQNHRYRNFRCRECEGFGHYQVECPNFLRRQNKEFVATLFDGESVTSSDSNDEIRALICCN
        + +  K   N     N++S  +NS  Y RK++GE           R FRCRECEG GHYQ ECP FLRRQ K F ATL D ++    + N      +C +
Subjt:  MKFLNKCSGNYISNTNKSSMLKNSKPYDRKRKGERKANNTQNHRYRNFRCRECEGFGHYQVECPNFLRRQNKEFVATLFDGESVTSSDSNDEIRALICCN

Query:  STKDNEELDNKVLKVNGSYNEVHPITHQFENLSVEEIYKKWKEDLCVLDQQMDKILKLFEDNHRLLTIIFYLKKDLKSSRLELKSMSKSVKILNSGTNDL
         T   +E +      +G   +        +N + EE+   WKED      Q ++I  L E+N RL+ +I  LK  LK  + E     KSVK+LNSGT +L
Subjt:  STKDNEELDNKVLKVNGSYNEVHPITHQFENLSVEEIYKKWKEDLCVLDQQMDKILKLFEDNHRLLTIIFYLKKDLKSSRLELKSMSKSVKILNSGTNDL

Query:  NKILNTWKQVADRNDIGFKKYKYARDGNTSNNYTLNRNTYPPRGRRENDRQNDVVQIR------KNRDLMCRECGGCGHL
        + ILN+ +   +R+ +GF     AR  NT    T   N  P      ND+ + V+  +      K    +C  CG   H+
Subjt:  NKILNTWKQVADRNDIGFKKYKYARDGNTSNNYTLNRNTYPPRGRRENDRQNDVVQIR------KNRDLMCRECGGCGHL

KAA0051793.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.1e-1936.41Show/hide
Query:  KRKGERKANNTQNHRYRNFRCRECEGFGHYQVECPNFLRRQNKEFVATLFDGESVTSSDSNDEIRALICCNSTKDNE------ELDNKVLKVNGSYNEVH
        K+K   K+++      R+F+C ECEGF HYQ EC  FL+R+NK    TL D ES + SD  +    LI C    ++E       L  K  K N S     
Subjt:  KRKGERKANNTQNHRYRNFRCRECEGFGHYQVECPNFLRRQNKEFVATLFDGESVTSSDSNDEIRALICCNSTKDNE------ELDNKVLKVNGSYNEVH

Query:  PITHQFENLSVEEIYKKWKEDLCVLDQQMDKILKLFEDNHRLLTIIFYLKKDLKSSRLELKSMSKSVKILNSGTNDLNKILNTWKQVADRNDIGF
                L  +E+  KW+ED  V   Q ++I  L EDNH L+++I+ LK DLK  + E  S+SKSV++L   T  L+ +L+  K  +++ D+G+
Subjt:  PITHQFENLSVEEIYKKWKEDLCVLDQQMDKILKLFEDNHRLLTIIFYLKKDLKSSRLELKSMSKSVKILNSGTNDLNKILNTWKQVADRNDIGF

KAA0059883.1 uncharacterized protein E6C27_scaffold108G001750 [Cucumis melo var. makuwa]1.5e-1936.99Show/hide
Query:  RNFRCRECEGFGHYQVECPNFLRRQNKEFVATLFDGESVTSSDSNDEIRALICCNSTKDNEELDNKVLKVNGSYNEVHPITHQFENLSVEEIYKKWKEDL
        R+ +CRECEG+GHYQVECPNF RRQ K F  TL +G++  S +  +  +A I   S  + E+ + +                  +  S +++  KWKED 
Subjt:  RNFRCRECEGFGHYQVECPNFLRRQNKEFVATLFDGESVTSSDSNDEIRALICCNSTKDNEELDNKVLKVNGSYNEVHPITHQFENLSVEEIYKKWKEDL

Query:  CVLDQQMDKILKLFEDNHRLLTIIFYLKKDLKSSRLELKSMSKSVKILNSGTNDLNKILNTWKQVADRNDIGF
         V   Q +KI  L E+N RLL++I  LK+ L+  + E     KS+K LNS T +L++ILN+ +  ++   +GF
Subjt:  CVLDQQMDKILKLFEDNHRLLTIIFYLKKDLKSSRLELKSMSKSVKILNSGTNDLNKILNTWKQVADRNDIGF

TYK29237.1 gag-pol polyprotein [Cucumis melo var. makuwa]4.3e-1933.71Show/hide
Query:  NKSSMLKNSKPYDRKRKGERKANNTQNHRYRNFRCRECEGFGHYQVECPNFLRRQNKEFVATLFDGESVTSSDSNDEIRALICCNSTKDNEELDNKVLKV
        N  +  + S  Y +K++G+RK           FRCREC G GHYQVECP FLR+Q K F  TL D ESV S D +  I A      T D+ E        
Subjt:  NKSSMLKNSKPYDRKRKGERKANNTQNHRYRNFRCRECEGFGHYQVECPNFLRRQNKEFVATLFDGESVTSSDSNDEIRALICCNSTKDNEELDNKVLKV

Query:  NGSYNEVHPITHQFENLSVEEIYKKWKEDLCVLDQQMDKILKLFEDNHRLLTIIFYLKKDLKSSRLELKSMSKSVKILNSGTNDLNKILNTWKQVADRND
                 +  + + LS+E++   WKED      Q ++I  L E+N RL+++I  LK  L+  + E   + K VK+LNSGT +L  IL      + R  
Subjt:  NGSYNEVHPITHQFENLSVEEIYKKWKEDLCVLDQQMDKILKLFEDNHRLLTIIFYLKKDLKSSRLELKSMSKSVKILNSGTNDLNKILNTWKQVADRND

Query:  IGFKKYKYARDGNTSNNYTLNRNTYPPRGRRENDRQNDVVQIR---KNRDLMCRECGGCGHLNV
        +GF          +S+  T      P   R E D  +    IR   K+    C  CG  GH+ V
Subjt:  IGFKKYKYARDGNTSNNYTLNRNTYPPRGRRENDRQNDVVQIR---KNRDLMCRECGGCGHLNV

TrEMBL top hitse value%identityAlignment
A0A5A7TJI2 Gag-pol polyprotein6.1e-1933.07Show/hide
Query:  SKPYDRKRKGERKANNTQNHRYRNFRCRECEGFGHYQVECPNFLRRQNKEFVATLFDGESVTSSDSNDEIRALICCNSTKDNEELDNKVLKVNGSYNEVH
        S  Y +K++G+RK           FRCREC G GHYQ +CP FLR+Q K F  TL D ES+ S D +  I A      T +N + D++ L          
Subjt:  SKPYDRKRKGERKANNTQNHRYRNFRCRECEGFGHYQVECPNFLRRQNKEFVATLFDGESVTSSDSNDEIRALICCNSTKDNEELDNKVLKVNGSYNEVH

Query:  PITHQFENLSVEEIYKKWKEDLCVLDQQMDKILKLFEDNHRLLTIIFYLKKDLKSSRLELKSMSKSVKILNSGTNDLNKILNTWKQVADRNDIGFKKYKY
         +  + + LS+E++   WKED      Q ++I  L E+N RL+++I  LK  LK  + +   + KSVK+LNSGT +L+ IL      + R  +GF     
Subjt:  PITHQFENLSVEEIYKKWKEDLCVLDQQMDKILKLFEDNHRLLTIIFYLKKDLKSSRLELKSMSKSVKILNSGTNDLNKILNTWKQVADRNDIGFKKYKY

Query:  ARDGNTSNNYTLNRNTYPPRGRREND---RQNDVVQIRKNRDLMCRECGGCGHL
             +S+  T          R E D    + D+  + K+    C  CG  GH+
Subjt:  ARDGNTSNNYTLNRNTYPPRGRREND---RQNDVVQIRKNRDLMCRECGGCGHL

A0A5A7TPF7 Gag-proteinase polyprotein1.9e-2033.57Show/hide
Query:  MKFLNKCSGNYISNTNKSSMLKNSKPYDRKRKGERKANNTQNHRYRNFRCRECEGFGHYQVECPNFLRRQNKEFVATLFDGESVTSSDSNDEIRALICCN
        + +  K   N     N++S  +NS  Y RK++GE           R FRCRECEG GHYQ ECP FLRRQ K F ATL D ++    + N      +C +
Subjt:  MKFLNKCSGNYISNTNKSSMLKNSKPYDRKRKGERKANNTQNHRYRNFRCRECEGFGHYQVECPNFLRRQNKEFVATLFDGESVTSSDSNDEIRALICCN

Query:  STKDNEELDNKVLKVNGSYNEVHPITHQFENLSVEEIYKKWKEDLCVLDQQMDKILKLFEDNHRLLTIIFYLKKDLKSSRLELKSMSKSVKILNSGTNDL
         T   +E +      +G   +        +N + EE+   WKED      Q ++I  L E+N RL+ +I  LK  LK  + E     KSVK+LNSGT +L
Subjt:  STKDNEELDNKVLKVNGSYNEVHPITHQFENLSVEEIYKKWKEDLCVLDQQMDKILKLFEDNHRLLTIIFYLKKDLKSSRLELKSMSKSVKILNSGTNDL

Query:  NKILNTWKQVADRNDIGFKKYKYARDGNTSNNYTLNRNTYPPRGRRENDRQNDVVQIR------KNRDLMCRECGGCGHL
        + ILN+ +   +R+ +GF     AR  NT    T   N  P      ND+ + V+  +      K    +C  CG   H+
Subjt:  NKILNTWKQVADRNDIGFKKYKYARDGNTSNNYTLNRNTYPPRGRRENDRQNDVVQIR------KNRDLMCRECGGCGHL

A0A5D3DD57 Gag-pol polyprotein5.5e-2036.41Show/hide
Query:  KRKGERKANNTQNHRYRNFRCRECEGFGHYQVECPNFLRRQNKEFVATLFDGESVTSSDSNDEIRALICCNSTKDNE------ELDNKVLKVNGSYNEVH
        K+K   K+++      R+F+C ECEGF HYQ EC  FL+R+NK    TL D ES + SD  +    LI C    ++E       L  K  K N S     
Subjt:  KRKGERKANNTQNHRYRNFRCRECEGFGHYQVECPNFLRRQNKEFVATLFDGESVTSSDSNDEIRALICCNSTKDNE------ELDNKVLKVNGSYNEVH

Query:  PITHQFENLSVEEIYKKWKEDLCVLDQQMDKILKLFEDNHRLLTIIFYLKKDLKSSRLELKSMSKSVKILNSGTNDLNKILNTWKQVADRNDIGF
                L  +E+  KW+ED  V   Q ++I  L EDNH L+++I+ LK DLK  + E  S+SKSV++L   T  L+ +L+  K  +++ D+G+
Subjt:  PITHQFENLSVEEIYKKWKEDLCVLDQQMDKILKLFEDNHRLLTIIFYLKKDLKSSRLELKSMSKSVKILNSGTNDLNKILNTWKQVADRNDIGF

A0A5D3DMG4 Uncharacterized protein7.2e-2036.99Show/hide
Query:  RNFRCRECEGFGHYQVECPNFLRRQNKEFVATLFDGESVTSSDSNDEIRALICCNSTKDNEELDNKVLKVNGSYNEVHPITHQFENLSVEEIYKKWKEDL
        R+ +CRECEG+GHYQVECPNF RRQ K F  TL +G++  S +  +  +A I   S  + E+ + +                  +  S +++  KWKED 
Subjt:  RNFRCRECEGFGHYQVECPNFLRRQNKEFVATLFDGESVTSSDSNDEIRALICCNSTKDNEELDNKVLKVNGSYNEVHPITHQFENLSVEEIYKKWKEDL

Query:  CVLDQQMDKILKLFEDNHRLLTIIFYLKKDLKSSRLELKSMSKSVKILNSGTNDLNKILNTWKQVADRNDIGF
         V   Q +KI  L E+N RLL++I  LK+ L+  + E     KS+K LNS T +L++ILN+ +  ++   +GF
Subjt:  CVLDQQMDKILKLFEDNHRLLTIIFYLKKDLKSSRLELKSMSKSVKILNSGTNDLNKILNTWKQVADRNDIGF

A0A5D3DZD2 Gag-pol polyprotein2.1e-1933.71Show/hide
Query:  NKSSMLKNSKPYDRKRKGERKANNTQNHRYRNFRCRECEGFGHYQVECPNFLRRQNKEFVATLFDGESVTSSDSNDEIRALICCNSTKDNEELDNKVLKV
        N  +  + S  Y +K++G+RK           FRCREC G GHYQVECP FLR+Q K F  TL D ESV S D +  I A      T D+ E        
Subjt:  NKSSMLKNSKPYDRKRKGERKANNTQNHRYRNFRCRECEGFGHYQVECPNFLRRQNKEFVATLFDGESVTSSDSNDEIRALICCNSTKDNEELDNKVLKV

Query:  NGSYNEVHPITHQFENLSVEEIYKKWKEDLCVLDQQMDKILKLFEDNHRLLTIIFYLKKDLKSSRLELKSMSKSVKILNSGTNDLNKILNTWKQVADRND
                 +  + + LS+E++   WKED      Q ++I  L E+N RL+++I  LK  L+  + E   + K VK+LNSGT +L  IL      + R  
Subjt:  NGSYNEVHPITHQFENLSVEEIYKKWKEDLCVLDQQMDKILKLFEDNHRLLTIIFYLKKDLKSSRLELKSMSKSVKILNSGTNDLNKILNTWKQVADRND

Query:  IGFKKYKYARDGNTSNNYTLNRNTYPPRGRRENDRQNDVVQIR---KNRDLMCRECGGCGHLNV
        +GF          +S+  T      P   R E D  +    IR   K+    C  CG  GH+ V
Subjt:  IGFKKYKYARDGNTSNNYTLNRNTYPPRGRRENDRQNDVVQIR---KNRDLMCRECGGCGHLNV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G05360.1 Zinc knuckle (CCHC-type) family protein7.2e-0425.26Show/hide
Query:  RCRECEGFGHYQVECPNFLRRQNKEFVATLFDGESVTSSDSNDEIRALICCNSTKDN------EELDNKVLKVNGSYNEVHPITHQFE--------NLSV
        RC EC+GF H   EC N ++ + K+F+ +    +S   SD  +E++ L+   + + +          +     + S +   P T            ++S 
Subjt:  RCRECEGFGHYQVECPNFLRRQNKEFVATLFDGESVTSSDSNDEIRALICCNSTKDN------EELDNKVLKVNGSYNEVHPITHQFE--------NLSV

Query:  EEIYKKWKE--DLCVLDQQMDKIL---KLFEDNHRLLTIIFYLKKDLKSSRLELKSMSKSVKILNSGTNDLNKILNTWKQVADRNDIGFK
        EE  + +K   + CV   + + +L   KL  +   + T+ F  +K+ ++S+LE     K++++LN+GT  L  IL+  K   D+  +GFK
Subjt:  EEIYKKWKE--DLCVLDQQMDKIL---KLFEDNHRLLTIIFYLKKDLKSSRLELKSMSKSVKILNSGTNDLNKILNTWKQVADRNDIGFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTTTTGAACAAGTGTTCTGGTAATTACATTAGTAACACCAACAAGTCCAGTATGTTGAAGAACTCCAAACCTTATGATAGAAAAAGAAAAGGCGAACGGAAAGC
AAACAATACTCAAAATCATCGATATAGAAACTTTAGATGTAGAGAATGTGAAGGCTTTGGTCACTATCAAGTTGAATGCCCAAATTTCTTGAGAAGACAAAACAAGGAAT
TTGTTGCTACCCTATTTGATGGTGAATCGGTTACAAGCAGTGACTCAAATGATGAGATTCGTGCCTTGATTTGTTGCAACTCTACAAAAGATAATGAGGAACTTGACAAC
AAAGTTTTGAAAGTGAATGGATCATATAATGAAGTTCATCCTATTACACATCAGTTTGAGAACCTAAGTGTTGAAGAAATCTATAAGAAATGGAAAGAAGATCTTTGTGT
TTTAGATCAACAAATGGATAAAATTCTAAAACTATTTGAAGATAATCATCGTCTTCTTACCATCATTTTTTACTTGAAGAAAGACTTAAAATCCTCACGATTAGAACTCA
AGTCAATGTCCAAATCAGTTAAAATACTCAACTCAGGGACAAATGATCTTAACAAGATTCTCAACACTTGGAAGCAAGTTGCTGATAGAAATGATATCGGATTCAAGAAG
TATAAGTATGCTCGTGATGGAAATACATCAAATAATTATACTTTGAACAGAAATACCTATCCACCCAGAGGAAGACGTGAAAATGATAGACAAAATGATGTTGTTCAGAT
CAGAAAGAACAGAGATCTAATGTGTAGAGAATGTGGTGGTTGTGGACATTTGAATGTCCTAACTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAATTTTTGAACAAGTGTTCTGGTAATTACATTAGTAACACCAACAAGTCCAGTATGTTGAAGAACTCCAAACCTTATGATAGAAAAAGAAAAGGCGAACGGAAAGC
AAACAATACTCAAAATCATCGATATAGAAACTTTAGATGTAGAGAATGTGAAGGCTTTGGTCACTATCAAGTTGAATGCCCAAATTTCTTGAGAAGACAAAACAAGGAAT
TTGTTGCTACCCTATTTGATGGTGAATCGGTTACAAGCAGTGACTCAAATGATGAGATTCGTGCCTTGATTTGTTGCAACTCTACAAAAGATAATGAGGAACTTGACAAC
AAAGTTTTGAAAGTGAATGGATCATATAATGAAGTTCATCCTATTACACATCAGTTTGAGAACCTAAGTGTTGAAGAAATCTATAAGAAATGGAAAGAAGATCTTTGTGT
TTTAGATCAACAAATGGATAAAATTCTAAAACTATTTGAAGATAATCATCGTCTTCTTACCATCATTTTTTACTTGAAGAAAGACTTAAAATCCTCACGATTAGAACTCA
AGTCAATGTCCAAATCAGTTAAAATACTCAACTCAGGGACAAATGATCTTAACAAGATTCTCAACACTTGGAAGCAAGTTGCTGATAGAAATGATATCGGATTCAAGAAG
TATAAGTATGCTCGTGATGGAAATACATCAAATAATTATACTTTGAACAGAAATACCTATCCACCCAGAGGAAGACGTGAAAATGATAGACAAAATGATGTTGTTCAGAT
CAGAAAGAACAGAGATCTAATGTGTAGAGAATGTGGTGGTTGTGGACATTTGAATGTCCTAACTTTCTAA
Protein sequenceShow/hide protein sequence
MKFLNKCSGNYISNTNKSSMLKNSKPYDRKRKGERKANNTQNHRYRNFRCRECEGFGHYQVECPNFLRRQNKEFVATLFDGESVTSSDSNDEIRALICCNSTKDNEELDN
KVLKVNGSYNEVHPITHQFENLSVEEIYKKWKEDLCVLDQQMDKILKLFEDNHRLLTIIFYLKKDLKSSRLELKSMSKSVKILNSGTNDLNKILNTWKQVADRNDIGFKK
YKYARDGNTSNNYTLNRNTYPPRGRRENDRQNDVVQIRKNRDLMCRECGGCGHLNVLTF