CuGenDBv2

Gene ID	PI0005886
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr11:26567056..26568385
RNA-Seq Expression	PI0005886
Synteny	PI0005886
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0036563.1 retrotransposon protein [Cucumis melo var. makuwa]

4.5e-64

43.84

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Query:  MNREAIPNILTVFTVSQRELLMALEILINDHKRLTQTPYDIRHRIRQLAYFRLIHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMF
        M+++ +  I TVFT++QR++L+ LE+L+ND+KR+T TP D RHRIRQLAYFR+IHESDLVCRQSTRM RRTFAILCHLLRTV+ L+STE+VDVEEMVAMF
Subjt:  MNREAIPNILTVFTVSQRELLMALEILINDHKRLTQTPYDIRHRIRQLAYFRLIHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMF

Query:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQPIPNNCTDPYWRC----------------------------------------
        LHVLAHDVKNRV+QREFVRSGET+S HFN+VL+AVVRL+++LIK+P P+ NNC D  W+C                                        
Subjt:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQPIPNNCTDPYWRC----------------------------------------

Query:  ----------------------------------------------------------------------------SRKMTSLEVIDDVDEVDSTCA-TT
                                                                                    +R+MT  + +DD DE DS  A TT
Subjt:  ----------------------------------------------------------------------------SRKMTSLEVIDDVDEVDSTCA-TT

Query:  GGDDIQYVESSDKWSKWRDEKAKEMFNEWQLWN
          +DIQY+E++++WS+WRDE  + MF +WQL N
Subjt:  GGDDIQYVESSDKWSKWRDEKAKEMFNEWQLWN

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]

8.5e-63

39.18

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Query:  MNREAIPNILTVFTVSQRELLMALEILINDHKRLTQTPYDIRHRIRQLAYFRLIHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMF
        M+   + +I+  F  SQR+LL+ LE+L ND KR+T  PY+ RHRIRQLAYFR+IH SDLVCRQSTRM RR FAILCHLLRT+AGL STEVVDVEEMVAMF
Subjt:  MNREAIPNILTVFTVSQRELLMALEILINDHKRLTQTPYDIRHRIRQLAYFRLIHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMF

Query:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQPIPNNCTDPYWR-----------------------------------------
        LH+LAHDVKNRV+QREF+RSGETISRHFN+VL+AV+RLHDEL+KKPQP+PN CTD  WR                                         
Subjt:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQPIPNNCTDPYWR-----------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------------------------CSRKMTSLEVIDDVDEVDSTCATTGGDDIQYVESSDKWSKWRDEKAKEMFNEWQLWNQ
                                       +R+MT+ ++ D++DEVDST ATT  DDI Y+E+S++WS+WRD  A+EMF EW+L NQ
Subjt:  ------------------------------CSRKMTSLEVIDDVDEVDSTCATTGGDDIQYVESSDKWSKWRDEKAKEMFNEWQLWNQ

KAA0047074.1 retrotransposon protein [Cucumis melo var. makuwa]

1.4e-70

51.93

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Query:  MNREAIPNILTVFTVSQRELLMALEILINDHKRLTQTPYDIRHRIRQLAYFRLIHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMF
        M+   + +I+  F  SQ++LL+ LE+L ND KR+T  PY+ RHRIRQLAYFR+IH SDLVCRQSTRM RR F ILCHLLRT+AGL STEVVDVEEMVAMF
Subjt:  MNREAIPNILTVFTVSQRELLMALEILINDHKRLTQTPYDIRHRIRQLAYFRLIHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMF

Query:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQPIPNNCTDPYWR----------------------------------------C
        LH+LAHDVKNRV+QREF+RS ETISRHFN+VL+AV+RLH+EL+KKPQP+PN+CTD  WR                                        C
Subjt:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQPIPNNCTDPYWR----------------------------------------C

Query:  SRKMTSLEVI----------------------------DDVDEVDSTCATTGGDDIQYVESSDKWSKWRDEKAKEMFNEWQLWNQ
          K   + V+                            D++DEVDST ATT  DDI Y+E+S++WS+WRD+ A+EMF EW+L NQ
Subjt:  SRKMTSLEVI----------------------------DDVDEVDSTCATTGGDDIQYVESSDKWSKWRDEKAKEMFNEWQLWNQ

KAA0048364.1 retrotransposon protein [Cucumis melo var. makuwa]

4.5e-64

39.9

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Query:  MNREAIPNILTVFTVSQRELLMALEILINDHKRLTQTPYDIRHRIRQLAYFRLIHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMF
        M+   + +I+  F  SQR+LL+ LE+L ND KR+T  PY+ RHRIRQLAYFR+IH SDLVCRQSTRM RR FAILCHLLRT+AGL STEVVDVEEMVAMF
Subjt:  MNREAIPNILTVFTVSQRELLMALEILINDHKRLTQTPYDIRHRIRQLAYFRLIHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMF

Query:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQPIPNNCTDPYWRC----------------------------------------
        LH+LAHDVKNRV+QREF+RSGETISRHFN+VL+AV+RLH+EL+KKPQP+PN CTD  WRC                                        
Subjt:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQPIPNNCTDPYWRC----------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------------------SRKMTSLEVIDDVDEVDSTCATTGGDDIQYVESSDKWSKWRDEKAKEMFNEWQLWNQ
                                +R MT+ ++ D++DEVDST ATT  DDI Y+E+S++WS+WRD  A+EMF EW+L NQ
Subjt:  ------------------------SRKMTSLEVIDDVDEVDSTCATTGGDDIQYVESSDKWSKWRDEKAKEMFNEWQLWNQ

KAA0065286.1 retrotransposon protein [Cucumis melo var. makuwa]

1.0e-63

39.18

Show/hide

Query:  MNREAIPNILTVFTVSQRELLMALEILINDHKRLTQTPYDIRHRIRQLAYFRLIHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMF
        M+   + +I+  F  SQR+LL+ LE+L ND KR+T  PY+ RHRIRQLAYFR+IH SDLVCRQSTRM RR FAILCHLLRT+AGL STEVVDVEEMVAMF
Subjt:  MNREAIPNILTVFTVSQRELLMALEILINDHKRLTQTPYDIRHRIRQLAYFRLIHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMF

Query:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQPIPNNCTDPYWRC----------------------------------------
        LH+LAHDVKNRV+QREF+RSGETISRHFN+VL+AV+RLH+EL+KKPQP+PN CTD  WRC                                        
Subjt:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQPIPNNCTDPYWRC----------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------------------SRKMTSLEVIDDVDEVDSTCATTGGDDIQYVESSDKWSKWRDEKAKEMFNEWQLWNQ
                                       +R+MT+ ++ D++DEVDST ATT  DDI Y+E+S++WS+WRD+ A+EMF EW+L NQ
Subjt:  -------------------------------SRKMTSLEVIDDVDEVDSTCATTGGDDIQYVESSDKWSKWRDEKAKEMFNEWQLWNQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T0Z8 Retrotransposon protein

2.2e-64

43.84

Show/hide

Query:  MNREAIPNILTVFTVSQRELLMALEILINDHKRLTQTPYDIRHRIRQLAYFRLIHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMF
        M+++ +  I TVFT++QR++L+ LE+L+ND+KR+T TP D RHRIRQLAYFR+IHESDLVCRQSTRM RRTFAILCHLLRTV+ L+STE+VDVEEMVAMF
Subjt:  MNREAIPNILTVFTVSQRELLMALEILINDHKRLTQTPYDIRHRIRQLAYFRLIHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMF

Query:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQPIPNNCTDPYWRC----------------------------------------
        LHVLAHDVKNRV+QREFVRSGET+S HFN+VL+AVVRL+++LIK+P P+ NNC D  W+C                                        
Subjt:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQPIPNNCTDPYWRC----------------------------------------

Query:  ----------------------------------------------------------------------------SRKMTSLEVIDDVDEVDSTCA-TT
                                                                                    +R+MT  + +DD DE DS  A TT
Subjt:  ----------------------------------------------------------------------------SRKMTSLEVIDDVDEVDSTCA-TT

Query:  GGDDIQYVESSDKWSKWRDEKAKEMFNEWQLWN
          +DIQY+E++++WS+WRDE  + MF +WQL N
Subjt:  GGDDIQYVESSDKWSKWRDEKAKEMFNEWQLWN

A0A5A7TXW1 Retrotransposon protein

4.1e-63

39.18

Show/hide

Query:  MNREAIPNILTVFTVSQRELLMALEILINDHKRLTQTPYDIRHRIRQLAYFRLIHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMF
        M+   + +I+  F  SQR+LL+ LE+L ND KR+T  PY+ RHRIRQLAYFR+IH SDLVCRQSTRM RR FAILCHLLRT+AGL STEVVDVEEMVAMF
Subjt:  MNREAIPNILTVFTVSQRELLMALEILINDHKRLTQTPYDIRHRIRQLAYFRLIHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMF

Query:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQPIPNNCTDPYWR-----------------------------------------
        LH+LAHDVKNRV+QREF+RSGETISRHFN+VL+AV+RLHDEL+KKPQP+PN CTD  WR                                         
Subjt:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQPIPNNCTDPYWR-----------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------------------------CSRKMTSLEVIDDVDEVDSTCATTGGDDIQYVESSDKWSKWRDEKAKEMFNEWQLWNQ
                                       +R+MT+ ++ D++DEVDST ATT  DDI Y+E+S++WS+WRD  A+EMF EW+L NQ
Subjt:  ------------------------------CSRKMTSLEVIDDVDEVDSTCATTGGDDIQYVESSDKWSKWRDEKAKEMFNEWQLWNQ

A0A5A7TZ93 Retrotransposon protein

2.2e-64

39.9

Show/hide

Query:  MNREAIPNILTVFTVSQRELLMALEILINDHKRLTQTPYDIRHRIRQLAYFRLIHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMF
        M+   + +I+  F  SQR+LL+ LE+L ND KR+T  PY+ RHRIRQLAYFR+IH SDLVCRQSTRM RR FAILCHLLRT+AGL STEVVDVEEMVAMF
Subjt:  MNREAIPNILTVFTVSQRELLMALEILINDHKRLTQTPYDIRHRIRQLAYFRLIHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMF

Query:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQPIPNNCTDPYWRC----------------------------------------
        LH+LAHDVKNRV+QREF+RSGETISRHFN+VL+AV+RLH+EL+KKPQP+PN CTD  WRC                                        
Subjt:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQPIPNNCTDPYWRC----------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------------------SRKMTSLEVIDDVDEVDSTCATTGGDDIQYVESSDKWSKWRDEKAKEMFNEWQLWNQ
                                +R MT+ ++ D++DEVDST ATT  DDI Y+E+S++WS+WRD  A+EMF EW+L NQ
Subjt:  ------------------------SRKMTSLEVIDDVDEVDSTCATTGGDDIQYVESSDKWSKWRDEKAKEMFNEWQLWNQ

A0A5A7VG29 Retrotransposon protein

4.9e-64

39.18

Show/hide

Query:  MNREAIPNILTVFTVSQRELLMALEILINDHKRLTQTPYDIRHRIRQLAYFRLIHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMF
        M+   + +I+  F  SQR+LL+ LE+L ND KR+T  PY+ RHRIRQLAYFR+IH SDLVCRQSTRM RR FAILCHLLRT+AGL STEVVDVEEMVAMF
Subjt:  MNREAIPNILTVFTVSQRELLMALEILINDHKRLTQTPYDIRHRIRQLAYFRLIHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMF

Query:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQPIPNNCTDPYWRC----------------------------------------
        LH+LAHDVKNRV+QREF+RSGETISRHFN+VL+AV+RLH+EL+KKPQP+PN CTD  WRC                                        
Subjt:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQPIPNNCTDPYWRC----------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------------------SRKMTSLEVIDDVDEVDSTCATTGGDDIQYVESSDKWSKWRDEKAKEMFNEWQLWNQ
                                       +R+MT+ ++ D++DEVDST ATT  DDI Y+E+S++WS+WRD+ A+EMF EW+L NQ
Subjt:  -------------------------------SRKMTSLEVIDDVDEVDSTCATTGGDDIQYVESSDKWSKWRDEKAKEMFNEWQLWNQ

A0A5D3BZB1 Retrotransposon protein

7.0e-71

51.93

Show/hide

Query:  MNREAIPNILTVFTVSQRELLMALEILINDHKRLTQTPYDIRHRIRQLAYFRLIHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMF
        M+   + +I+  F  SQ++LL+ LE+L ND KR+T  PY+ RHRIRQLAYFR+IH SDLVCRQSTRM RR F ILCHLLRT+AGL STEVVDVEEMVAMF
Subjt:  MNREAIPNILTVFTVSQRELLMALEILINDHKRLTQTPYDIRHRIRQLAYFRLIHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMF

Query:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQPIPNNCTDPYWR----------------------------------------C
        LH+LAHDVKNRV+QREF+RS ETISRHFN+VL+AV+RLH+EL+KKPQP+PN+CTD  WR                                        C
Subjt:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQPIPNNCTDPYWR----------------------------------------C

Query:  SRKMTSLEVI----------------------------DDVDEVDSTCATTGGDDIQYVESSDKWSKWRDEKAKEMFNEWQLWNQ
          K   + V+                            D++DEVDST ATT  DDI Y+E+S++WS+WRD+ A+EMF EW+L NQ
Subjt:  SRKMTSLEVI----------------------------DDVDEVDSTCATTGGDDIQYVESSDKWSKWRDEKAKEMFNEWQLWNQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G28730.1 unknown protein

9.2e-07

34.07

Show/hide

Query:  IHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMFLHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIK
        I+ +++ C+   RM    F  LC +L    GL S+  + ++E VA+FL + A +   R +   F  + ETI R F+ VL A+ RL  E I+
Subjt:  IHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMFLHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIK

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

8.6e-13

36.28

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Query:  FRLIHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMFLHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQPIP
        +++++  +  C ++ RM +  F  LC LL+T   L  T  + +E  +A+FL ++ H+++ R VQ  F  SGETISRHFN VL AV+ +  +     QP  
Subjt:  FRLIHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMFLHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQPIP

Query:  NNCT----DPYWR
        N+ T    DPY++
Subjt:  NNCT----DPYWR

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAATCGGGAAGCAATCCCCAACATTCTGACGGTCTTCACTGTGTCCCAACGTGAATTGCTAATGGCGTTGGAGATACTTATAAACGACCACAAGCGGTTAACGCAAAC
TCCGTACGACATTAGACATAGGATTAGACAACTAGCATATTTCCGTTTAATCCATGAATCCGATCTTGTCTGTCGGCAAAGTACCAGAATGGGCAGGCGAACGTTTGCCA
TTCTCTGCCACTTGCTTAGGACGGTCGCTGGGTTAGCCTCGACCGAAGTCGTGGACGTTGAGGAGATGGTGGCGATGTTCCTTCATGTCCTAGCACACGATGTGAAGAAC
CGAGTGGTCCAGCGGGAGTTCGTGCGATCCGGTGAGACAATTTCAAGGCATTTCAACATTGTGTTGATGGCCGTCGTACGTCTTCACGATGAGCTGATAAAAAAGCCACA
ACCGATACCGAACAACTGCACAGATCCCTATTGGCGTTGTTCGAGGAAGATGACGAGTTTAGAGGTAATAGATGACGTCGATGAAGTCGACTCAACATGCGCAACGACGG
GAGGTGACGACATTCAGTACGTTGAGAGTTCGGACAAATGGAGTAAGTGGAGGGACGAAAAAGCGAAGGAGATGTTCAATGAATGGCAACTGTGGAATCAGTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MNREAIPNILTVFTVSQRELLMALEILINDHKRLTQTPYDIRHRIRQLAYFRLIHESDLVCRQSTRMGRRTFAILCHLLRTVAGLASTEVVDVEEMVAMFLHVLAHDVKN
RVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQPIPNNCTDPYWRCSRKMTSLEVIDDVDEVDSTCATTGGDDIQYVESSDKWSKWRDEKAKEMFNEWQLWNQ

PI0005886 (gene) of Melon (PI 482460) v1 genome