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PI0005910 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005910
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr11:27623694..27624124
RNA-Seq ExpressionPI0005910
SyntenyPI0005910
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN50529.1 hypothetical protein Csa_000167 [Cucumis sativus]6.7e-1361.54Show/hide
Query:  MYAKSRAIHMTRKLFEMINNYHGLEASNGSLRCYG---RIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGES
        MYAK   IHMT    E    + G         CYG   RIKE WDFIENMPIGLGITVYGATLGAC I  KNVE GES
Subjt:  MYAKSRAIHMTRKLFEMINNYHGLEASNGSLRCYG---RIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGES

XP_008445930.1 PREDICTED: pentatricopeptide repeat-containing protein At1g11290, chloroplastic [Cucumis melo]9.1e-1078.26Show/hide
Query:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL
        GRIKEAWDFIENMPI  GITVYGA LGACKI  KNVE GE   N L
Subjt:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL

XP_022139093.1 pentatricopeptide repeat-containing protein At1g11290, chloroplastic isoform X2 [Momordica charantia]1.5e-0976.09Show/hide
Query:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL
        GRI EAWDFIENMP+  GITVYGA LGACKI  KNVELGE   N L
Subjt:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL

XP_023541274.1 pentatricopeptide repeat-containing protein At1g11290, chloroplastic [Cucurbita pepo subsp. pepo]3.1e-1056Show/hide
Query:  KLFEMINNYHGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL
        + FE +   +GLE S          L   GRIKEAWDFIENMP+  GITVYGA LGACKI  KNVE GE   N L
Subjt:  KLFEMINNYHGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL

XP_038891367.1 pentatricopeptide repeat-containing protein At1g11290, chloroplastic [Benincasa hispida]5.3e-1078.26Show/hide
Query:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL
        GRIKEAWDFI+NMPI  GITVYGA LGACKI  KNVELGE + N L
Subjt:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL

TrEMBL top hitse value%identityAlignment
A0A0A0KNU8 Uncharacterized protein3.2e-1361.54Show/hide
Query:  MYAKSRAIHMTRKLFEMINNYHGLEASNGSLRCYG---RIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGES
        MYAK   IHMT    E    + G         CYG   RIKE WDFIENMPIGLGITVYGATLGAC I  KNVE GES
Subjt:  MYAKSRAIHMTRKLFEMINNYHGLEASNGSLRCYG---RIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGES

A0A1S3BEJ2 pentatricopeptide repeat-containing protein At1g11290, chloroplastic4.4e-1078.26Show/hide
Query:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL
        GRIKEAWDFIENMPI  GITVYGA LGACKI  KNVE GE   N L
Subjt:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL

A0A5D3CX30 Pentatricopeptide repeat-containing protein4.4e-1078.26Show/hide
Query:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL
        GRIKEAWDFIENMPI  GITVYGA LGACKI  KNVE GE   N L
Subjt:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL

A0A6J1CD18 pentatricopeptide repeat-containing protein At1g11290, chloroplastic isoform X17.5e-1076.09Show/hide
Query:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL
        GRI EAWDFIENMP+  GITVYGA LGACKI  KNVELGE   N L
Subjt:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL

A0A6J1CEW2 pentatricopeptide repeat-containing protein At1g11290, chloroplastic isoform X27.5e-1076.09Show/hide
Query:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL
        GRI EAWDFIENMP+  GITVYGA LGACKI  KNVELGE   N L
Subjt:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL

SwissProt top hitse value%identityAlignment
Q3E6Q1 Pentatricopeptide repeat-containing protein At1g11290, chloroplastic3.7e-0652.17Show/hide
Query:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL
        GR+ EAWDFI  MP+   + VYGA LGAC+I  KNV   E     L
Subjt:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL

Q9CAY1 Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial2.0e-0455Show/hide
Query:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGE
        GR+ EA +FIE+MP+     V+GA LGACKI  KNV++ E
Subjt:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGE

Q9LNP2 Putative pentatricopeptide repeat-containing protein At1g176307.7e-0431.17Show/hide
Query:  RKLFEMINNYHGLEASNGSLRC-------YGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYLS
        R++F  ++   GLE       C        G +KEA + ++NMP+   + V GA L +C++  KNV++ E + + LS
Subjt:  RKLFEMINNYHGLEASNGSLRC-------YGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYLS

Q9LTV8 Pentatricopeptide repeat-containing protein At3g127704.5e-0450Show/hide
Query:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGE
        G + +A++ I+ MP+  G+TV+GA L ACK K ++VELGE
Subjt:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGE

Arabidopsis top hitse value%identityAlignment
AT1G11290.1 Pentatricopeptide repeat (PPR) superfamily protein2.6e-0752.17Show/hide
Query:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL
        GR+ EAWDFI  MP+   + VYGA LGAC+I  KNV   E     L
Subjt:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL

AT1G17630.1 Pentatricopeptide repeat (PPR-like) superfamily protein5.5e-0531.17Show/hide
Query:  RKLFEMINNYHGLEASNGSLRC-------YGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYLS
        R++F  ++   GLE       C        G +KEA + ++NMP+   + V GA L +C++  KNV++ E + + LS
Subjt:  RKLFEMINNYHGLEASNGSLRC-------YGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYLS

AT3G11460.1 Pentatricopeptide repeat (PPR) superfamily protein1.4e-0555Show/hide
Query:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGE
        GR+ EA +FIE+MP+     V+GA LGACKI  KNV++ E
Subjt:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGE

AT3G12770.1 mitochondrial editing factor 223.2e-0550Show/hide
Query:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGE
        G + +A++ I+ MP+  G+TV+GA L ACK K ++VELGE
Subjt:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGE

AT5G59200.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.2e-0447.83Show/hide
Query:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL
        GR++EA+ FIEN+PI     + G  L ACKI   N+ELGE +   L
Subjt:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGCAAAAAGTAGAGCGATTCATATGACAAGGAAGCTTTTTGAGATGATCAATAACTACCATGGATTGGAGGCTTCAAATGGATCACTACGGTGCTATGGCAGGAT
CAAAGAAGCCTGGGATTTTATAGAGAACATGCCTATTGGTCTAGGGATTACTGTATATGGTGCCACGTTGGGTGCTTGTAAAATTAAAAAAAAAAATGTTGAATTGGGAG
AGAGCCTAACAAACTATTTGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATGCAAAAAGTAGAGCGATTCATATGACAAGGAAGCTTTTTGAGATGATCAATAACTACCATGGATTGGAGGCTTCAAATGGATCACTACGGTGCTATGGCAGGAT
CAAAGAAGCCTGGGATTTTATAGAGAACATGCCTATTGGTCTAGGGATTACTGTATATGGTGCCACGTTGGGTGCTTGTAAAATTAAAAAAAAAAATGTTGAATTGGGAG
AGAGCCTAACAAACTATTTGAGTTGA
Protein sequenceShow/hide protein sequence
MYAKSRAIHMTRKLFEMINNYHGLEASNGSLRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYLS