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PI0005911 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005911
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description50S ribosomal protein L30
Genome locationchr11:21642534..21652555
RNA-Seq ExpressionPI0005911
SyntenyPI0005911
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005996 - Ribosomal protein L30, bacterial-type
IPR016082 - Ribosomal protein L30, ferredoxin-like fold domain
IPR036919 - Ribosomal protein L30, ferredoxin-like fold domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604875.1 hypothetical protein SDJN03_02192, partial [Cucurbita argyrosperma subsp. sororia]7.3e-4786.73Show/hide
Query:  ILQILDMNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVETEEMYKARKQKMEQHRALRLPL
        IL++LDMNAFKAFKA+VPIAWSPNLYITLVRGIPGTRRLHRRTLE LRLRKCNRTVM  NTPTVRGM+QQVKRLVVVETEEM+KARKQK+EQH++LR PL
Subjt:  ILQILDMNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVETEEMYKARKQKMEQHRALRLPL

Query:  VINHLPAPSSASA
        V+NHLPAPSS S+
Subjt:  VINHLPAPSSASA

XP_004151902.1 uncharacterized protein LOC101219925 [Cucumis sativus]2.8e-4693.52Show/hide
Query:  MNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVETEEMYKARKQKMEQHRALRLPLVINHLP
        MNAFKAFKASVPIAWS NLYITLVRG+PGTRRLHRRTLE LRLRKCNRTVM  NTPTVRGM+QQVKRLVVVETEEMYKARKQKMEQHRALR PLVINHLP
Subjt:  MNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVETEEMYKARKQKMEQHRALRLPLVINHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

XP_008455933.1 PREDICTED: 50S ribosomal protein L30 [Cucumis melo]7.3e-4793.52Show/hide
Query:  MNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVETEEMYKARKQKMEQHRALRLPLVINHLP
        MNAFKAFKASVPIAWSPNLYITLVRG+PGTRRLHRRTLE LRLRKCNRTVM  NTPTVRGM+QQVKRLVVVETEEMYKARKQKME+HRALR PLVINHLP
Subjt:  MNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVETEEMYKARKQKMEQHRALRLPLVINHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

XP_022944386.1 uncharacterized protein LOC111448848 [Cucurbita moschata]1.5e-4488.89Show/hide
Query:  MNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVETEEMYKARKQKMEQHRALRLPLVINHLP
        MNAFKAFKA+VPI WSPNLYITLVRG+PGTRRLHRRTLE LRLRKCNRTVM  NTPTVRGM+QQVKRLVVVETEEMYKARKQK+EQH ALR PLV+NHLP
Subjt:  MNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVETEEMYKARKQKMEQHRALRLPLVINHLP

Query:  APSSASAS
        +PSSASAS
Subjt:  APSSASAS

XP_023512952.1 uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo]4.0e-4590.74Show/hide
Query:  MNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVETEEMYKARKQKMEQHRALRLPLVINHLP
        MNAFKAFKA+VPIAWSPNLYITLVRG+PGTRRLHRRTLE LRLRKCNRTVM  NTPTVRGM+QQVKRLVVVETEEMYKARKQK+EQH ALR PLV+NHLP
Subjt:  MNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVETEEMYKARKQKMEQHRALRLPLVINHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

TrEMBL top hitse value%identityAlignment
A0A0A0LN29 Ribosomal_L30 domain-containing protein1.3e-4693.52Show/hide
Query:  MNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVETEEMYKARKQKMEQHRALRLPLVINHLP
        MNAFKAFKASVPIAWS NLYITLVRG+PGTRRLHRRTLE LRLRKCNRTVM  NTPTVRGM+QQVKRLVVVETEEMYKARKQKMEQHRALR PLVINHLP
Subjt:  MNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVETEEMYKARKQKMEQHRALRLPLVINHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

A0A1S3C214 50S ribosomal protein L303.5e-4793.52Show/hide
Query:  MNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVETEEMYKARKQKMEQHRALRLPLVINHLP
        MNAFKAFKASVPIAWSPNLYITLVRG+PGTRRLHRRTLE LRLRKCNRTVM  NTPTVRGM+QQVKRLVVVETEEMYKARKQKME+HRALR PLVINHLP
Subjt:  MNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVETEEMYKARKQKMEQHRALRLPLVINHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

A0A5A7VAZ6 50S ribosomal protein L303.5e-4793.52Show/hide
Query:  MNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVETEEMYKARKQKMEQHRALRLPLVINHLP
        MNAFKAFKASVPIAWSPNLYITLVRG+PGTRRLHRRTLE LRLRKCNRTVM  NTPTVRGM+QQVKRLVVVETEEMYKARKQKME+HRALR PLVINHLP
Subjt:  MNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVETEEMYKARKQKMEQHRALRLPLVINHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

A0A6J1FUA4 uncharacterized protein LOC1114488487.4e-4588.89Show/hide
Query:  MNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVETEEMYKARKQKMEQHRALRLPLVINHLP
        MNAFKAFKA+VPI WSPNLYITLVRG+PGTRRLHRRTLE LRLRKCNRTVM  NTPTVRGM+QQVKRLVVVETEEMYKARKQK+EQH ALR PLV+NHLP
Subjt:  MNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVETEEMYKARKQKMEQHRALRLPLVINHLP

Query:  APSSASAS
        +PSSASAS
Subjt:  APSSASAS

A0A6J1G641 uncharacterized protein LOC1114511211.3e-4487.85Show/hide
Query:  MNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVETEEMYKARKQKMEQHRALRLPLVINHLP
        MNAFKAFKA+VPIAWSPNLYITLVRGIPGTRRLHRRTLE LRLRKCNRTVM  NTPTVRGM+QQVKRLVVVETEEM+KARKQK+EQH++LR PLV+NHLP
Subjt:  MNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVETEEMYKARKQKMEQHRALRLPLVINHLP

Query:  APSSASA
        APSS S+
Subjt:  APSSASA

SwissProt top hitse value%identityAlignment
A1KB09 50S ribosomal protein L303.6e-0450Show/hide
Query:  ITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVE
        +TLV+ + GT++ HR T+  L LR+ N TV   +TP VRGMV +V  LV VE
Subjt:  ITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVE

A4QBL5 50S ribosomal protein L307.9e-0444.44Show/hide
Query:  LYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVE
        L IT ++G  GT+  HR  L  L L++   TV+  +TP VRGM+  V+ L+VVE
Subjt:  LYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVE

C3PL27 50S ribosomal protein L303.6e-0444.44Show/hide
Query:  LYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVE
        L IT V+G+ GT+  HR  +E L L++   +V+  +TP +RGMV +V+ LV VE
Subjt:  LYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVE

Q8FS51 50S ribosomal protein L302.7e-0448.15Show/hide
Query:  LYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVE
        L IT V+G  GT+  HR  L  L L++   +V+  +TP VRGMVQ V+ L+VVE
Subjt:  LYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVE

Q8NSX3 50S ribosomal protein L304.7e-0444.44Show/hide
Query:  LYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVE
        L IT ++G  GT+  HR  L  L L++   TV+  +TP VRGM+  V+ L+VVE
Subjt:  LYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVE

Arabidopsis top hitse value%identityAlignment
AT5G55140.1 ribosomal protein L30 family protein1.7e-3363.3Show/hide
Query:  MNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVETEEMYKARKQKMEQHRALRLPLVINH-L
        M+ F+AFKA VPI WS +LYITLVRG+PGTR+LHRRTLE + LR+C+RTV+H N  ++RGM+ QVKR+VVVETEEMY ARK+    H+ALR PLV++H  
Subjt:  MNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVETEEMYKARKQKMEQHRALRLPLVINH-L

Query:  PAPSSASAS
        PA  S++ S
Subjt:  PAPSSASAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACCGTTAAAGTTTTCCATCCTCCCTTCCCCGATCACCGTCAGTCCGACACCGCCAATCCATCACAGCTACGTCACGATTCCAGCTTCAAAGTAGCCGCACCTTC
CCTCCCTTTCCCCTTATGTCCTGAAATCCTCATAGTCTATCACCGGCTCACGGTCACTCCACAATTCGGCAATCTCATTTCCCAGTTCCACACGACCACGATTCCAATTT
TGCAGATCTTGGACATGAATGCCTTTAAGGCTTTCAAAGCCAGTGTCCCAATTGCATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATACCGGGAACAAGGAGA
CTTCACAGACGTACATTGGAGGTATTGCGGCTCCGAAAATGTAACCGAACTGTCATGCACGGGAACACGCCTACTGTTAGAGGAATGGTTCAACAGGTAAAGCGATTAGT
AGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGATGGAACAGCACAGGGCCCTACGACTGCCGTTAGTAATAAATCACCTTCCGGCACCAAGTTCTGCTT
CTGCCTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAACCGTTAAAGTTTTCCATCCTCCCTTCCCCGATCACCGTCAGTCCGACACCGCCAATCCATCACAGCTACGTCACGATTCCAGCTTCAAAGTAGCCGCACCTTC
CCTCCCTTTCCCCTTATGTCCTGAAATCCTCATAGTCTATCACCGGCTCACGGTCACTCCACAATTCGGCAATCTCATTTCCCAGTTCCACACGACCACGATTCCAATTT
TGCAGATCTTGGACATGAATGCCTTTAAGGCTTTCAAAGCCAGTGTCCCAATTGCATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATACCGGGAACAAGGAGA
CTTCACAGACGTACATTGGAGGTATTGCGGCTCCGAAAATGTAACCGAACTGTCATGCACGGGAACACGCCTACTGTTAGAGGAATGGTTCAACAGGTAAAGCGATTAGT
AGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGATGGAACAGCACAGGGCCCTACGACTGCCGTTAGTAATAAATCACCTTCCGGCACCAAGTTCTGCTT
CTGCCTCTTGA
Protein sequenceShow/hide protein sequence
METVKVFHPPFPDHRQSDTANPSQLRHDSSFKVAAPSLPFPLCPEILIVYHRLTVTPQFGNLISQFHTTTIPILQILDMNAFKAFKASVPIAWSPNLYITLVRGIPGTRR
LHRRTLEVLRLRKCNRTVMHGNTPTVRGMVQQVKRLVVVETEEMYKARKQKMEQHRALRLPLVINHLPAPSSASAS