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PI0005952 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005952
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr02:16309109..16309610
RNA-Seq ExpressionPI0005952
SyntenyPI0005952
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046551.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]2.3e-1986.67Show/hide
Query:  MERLLLLLRFHANAPPSTAPPPPAPAQLKRIHIGGALSPFIFTYSEAVKDVAVIYWDLLM
        ME+LLLLL FHANAPPSTA PPPAPAQLKRIHIGGALSPFIFTYS AVK VA+I WD LM
Subjt:  MERLLLLLRFHANAPPSTAPPPPAPAQLKRIHIGGALSPFIFTYSEAVKDVAVIYWDLLM

KAE8652979.1 hypothetical protein Csa_021104, partial [Cucumis sativus]1.2e-2091.8Show/hide
Query:  MERLLLLLRFHANAPPSTA-PPPPAPAQLKRIHIGGALSPFIFTYSEAVKDVAVIYWDLLM
        MERLLLLL FHANAPPSTA PPPPAPAQLKRIHIGGALSPF FTYS AVK VAVIYWDLLM
Subjt:  MERLLLLLRFHANAPPSTA-PPPPAPAQLKRIHIGGALSPFIFTYSEAVKDVAVIYWDLLM

KAG6587964.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]3.0e-1168.75Show/hide
Query:  MERLLLLLRF-----HANAPPSTAPPPPAPAQLKRIHIGGALSPFIFTYSEAVKDVAVIYWDLL
        MERLLL+L F     HANAPPS+A PP A A LKR HIG A SP IFTYSEAVKD  VI WDL+
Subjt:  MERLLLLLRF-----HANAPPSTAPPPPAPAQLKRIHIGGALSPFIFTYSEAVKDVAVIYWDLL

KAG7021854.1 Pentatricopeptide repeat-containing protein [Cucurbita argyrosperma subsp. argyrosperma]4.0e-1169.84Show/hide
Query:  MERLLLLLRF-----HANAPPSTAPPPPAPAQLKRIHIGGALSPFIFTYSEAVKDVAVIYWDL
        MERLLL+L F     HANAPPS+A PP A A LKR HIG A SP IFTYSEAVKD  VI WDL
Subjt:  MERLLLLLRF-----HANAPPSTAPPPPAPAQLKRIHIGGALSPFIFTYSEAVKDVAVIYWDL

TrEMBL top hitse value%identityAlignment
A0A5A7TZ04 Pentatricopeptide repeat-containing protein1.1e-1986.67Show/hide
Query:  MERLLLLLRFHANAPPSTAPPPPAPAQLKRIHIGGALSPFIFTYSEAVKDVAVIYWDLLM
        ME+LLLLL FHANAPPSTA PPPAPAQLKRIHIGGALSPFIFTYS AVK VA+I WD LM
Subjt:  MERLLLLLRFHANAPPSTAPPPPAPAQLKRIHIGGALSPFIFTYSEAVKDVAVIYWDLLM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGGCTGCTTCTACTGCTCCGCTTCCATGCAAATGCACCCCCGTCAACCGCTCCTCCTCCTCCTGCACCTGCCCAGCTGAAGAGAATTCATATTGGAGGAGCTTT
ATCTCCATTCATCTTCACTTATTCAGAGGCAGTGAAAGACGTTGCTGTAATATATTGGGATTTGCTGATGGTGAGGCGAAAGTTTGACGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAGGCTGCTTCTACTGCTCCGCTTCCATGCAAATGCACCCCCGTCAACCGCTCCTCCTCCTCCTGCACCTGCCCAGCTGAAGAGAATTCATATTGGAGGAGCTTT
ATCTCCATTCATCTTCACTTATTCAGAGGCAGTGAAAGACGTTGCTGTAATATATTGGGATTTGCTGATGGTGAGGCGAAAGTTTGACGAGTAG
Protein sequenceShow/hide protein sequence
MERLLLLLRFHANAPPSTAPPPPAPAQLKRIHIGGALSPFIFTYSEAVKDVAVIYWDLLMVRRKFDE