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PI0005954 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005954
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionsister chromatid cohesion 1 protein 1
Genome locationchr10:14266169..14267003
RNA-Seq ExpressionPI0005954
SyntenyPI0005954
Gene Ontology termsGO:0000038 - very long-chain fatty acid metabolic process (biological process)
GO:0001676 - long-chain fatty acid metabolic process (biological process)
GO:0010032 - meiotic chromosome condensation (biological process)
GO:0033540 - fatty acid beta-oxidation using acyl-CoA oxidase (biological process)
GO:0051455 - attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation (biological process)
GO:0051754 - meiotic sister chromatid cohesion, centromeric (biological process)
GO:0055088 - lipid homeostasis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005777 - peroxisome (cellular component)
GO:0008278 - cohesin complex (cellular component)
GO:0005504 - fatty acid binding (molecular function)
GO:0016401 - palmitoyl-CoA oxidase activity (molecular function)
GO:0071949 - FAD binding (molecular function)
InterPro domainsIPR039781 - Rad21/Rec8-like protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035874.1 sister chromatid cohesion 1 protein 1 [Cucumis melo var. makuwa]4.3e-8398.16Show/hide
Query:  PFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRS
        PFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRS
Subjt:  PFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRS

Query:  SGGLEPVAEENPWPHHSDPNFKLARLSENDPDLLEETALTQTQVTQAAIKHPPADKITDSIRM
        SGGLEPVAEENPW HHSDPNFKLARLSENDPDLLEETALTQTQV+QAA KHPPADKITDSIRM
Subjt:  SGGLEPVAEENPWPHHSDPNFKLARLSENDPDLLEETALTQTQVTQAAIKHPPADKITDSIRM

KGN50276.2 hypothetical protein Csa_005815 [Cucumis sativus]3.4e-8095.71Show/hide
Query:  PFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRS
        PFEDHYSGVGSQSFG SMEKLMTGQVN GAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDS+RFNKKR YSSSKRS
Subjt:  PFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRS

Query:  SGGLEPVAEENPWPHHSDPNFKLARLSENDPDLLEETALTQTQVTQAAIKHPPADKITDSIRM
        SGGLEPVAEENPW HHSDPNFKLARLSENDPDLLEETALTQTQ+TQAAIK+PPADKITDSIRM
Subjt:  SGGLEPVAEENPWPHHSDPNFKLARLSENDPDLLEETALTQTQVTQAAIKHPPADKITDSIRM

TYK30322.1 sister chromatid cohesion 1 protein 1 [Cucumis melo var. makuwa]4.3e-8398.16Show/hide
Query:  PFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRS
        PFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRS
Subjt:  PFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRS

Query:  SGGLEPVAEENPWPHHSDPNFKLARLSENDPDLLEETALTQTQVTQAAIKHPPADKITDSIRM
        SGGLEPVAEENPW HHSDPNFKLARLSENDPDLLEETALTQTQV+QAA KHPPADKITDSIRM
Subjt:  SGGLEPVAEENPWPHHSDPNFKLARLSENDPDLLEETALTQTQVTQAAIKHPPADKITDSIRM

XP_008454870.1 PREDICTED: sister chromatid cohesion 1 protein 1 [Cucumis melo]4.3e-8398.16Show/hide
Query:  PFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRS
        PFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRS
Subjt:  PFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRS

Query:  SGGLEPVAEENPWPHHSDPNFKLARLSENDPDLLEETALTQTQVTQAAIKHPPADKITDSIRM
        SGGLEPVAEENPW HHSDPNFKLARLSENDPDLLEETALTQTQV+QAA KHPPADKITDSIRM
Subjt:  SGGLEPVAEENPWPHHSDPNFKLARLSENDPDLLEETALTQTQVTQAAIKHPPADKITDSIRM

XP_031742082.1 sister chromatid cohesion 1 protein 1 [Cucumis sativus]3.4e-8095.71Show/hide
Query:  PFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRS
        PFEDHYSGVGSQSFG SMEKLMTGQVN GAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDS+RFNKKR YSSSKRS
Subjt:  PFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRS

Query:  SGGLEPVAEENPWPHHSDPNFKLARLSENDPDLLEETALTQTQVTQAAIKHPPADKITDSIRM
        SGGLEPVAEENPW HHSDPNFKLARLSENDPDLLEETALTQTQ+TQAAIK+PPADKITDSIRM
Subjt:  SGGLEPVAEENPWPHHSDPNFKLARLSENDPDLLEETALTQTQVTQAAIKHPPADKITDSIRM

TrEMBL top hitse value%identityAlignment
A0A0A0KQK0 Uncharacterized protein1.1e-8195.76Show/hide
Query:  MKPFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSK
        MKPFEDHYSGVGSQSFG SMEKLMTGQVN GAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDS+RFNKKR YSSSK
Subjt:  MKPFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSK

Query:  RSSGGLEPVAEENPWPHHSDPNFKLARLSENDPDLLEETALTQTQVTQAAIKHPPADKITDSIRM
        RSSGGLEPVAEENPW HHSDPNFKLARLSENDPDLLEETALTQTQ+TQAAIK+PPADKITDSIRM
Subjt:  RSSGGLEPVAEENPWPHHSDPNFKLARLSENDPDLLEETALTQTQVTQAAIKHPPADKITDSIRM

A0A1S3BZ41 sister chromatid cohesion 1 protein 12.1e-8398.16Show/hide
Query:  PFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRS
        PFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRS
Subjt:  PFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRS

Query:  SGGLEPVAEENPWPHHSDPNFKLARLSENDPDLLEETALTQTQVTQAAIKHPPADKITDSIRM
        SGGLEPVAEENPW HHSDPNFKLARLSENDPDLLEETALTQTQV+QAA KHPPADKITDSIRM
Subjt:  SGGLEPVAEENPWPHHSDPNFKLARLSENDPDLLEETALTQTQVTQAAIKHPPADKITDSIRM

A0A5A7SX09 Sister chromatid cohesion 1 protein 12.1e-8398.16Show/hide
Query:  PFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRS
        PFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRS
Subjt:  PFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRS

Query:  SGGLEPVAEENPWPHHSDPNFKLARLSENDPDLLEETALTQTQVTQAAIKHPPADKITDSIRM
        SGGLEPVAEENPW HHSDPNFKLARLSENDPDLLEETALTQTQV+QAA KHPPADKITDSIRM
Subjt:  SGGLEPVAEENPWPHHSDPNFKLARLSENDPDLLEETALTQTQVTQAAIKHPPADKITDSIRM

A0A5D3E364 Sister chromatid cohesion 1 protein 12.1e-8398.16Show/hide
Query:  PFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRS
        PFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRS
Subjt:  PFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRS

Query:  SGGLEPVAEENPWPHHSDPNFKLARLSENDPDLLEETALTQTQVTQAAIKHPPADKITDSIRM
        SGGLEPVAEENPW HHSDPNFKLARLSENDPDLLEETALTQTQV+QAA KHPPADKITDSIRM
Subjt:  SGGLEPVAEENPWPHHSDPNFKLARLSENDPDLLEETALTQTQVTQAAIKHPPADKITDSIRM

A0A6J1GXZ1 sister chromatid cohesion 1 protein 1-like isoform X11.1e-5777.44Show/hide
Query:  FEDHYSGVGSQSFGGSMEKLMTGQVNDG--AEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKR
        +E+ YSGVGSQSFG S+EKL T  VND   AEI LEEL P+  +N+M MAERNQ+ TPGNSG GVRSVSSSASEH V   N  T+SVR NKKRPYSSS++
Subjt:  FEDHYSGVGSQSFGGSMEKLMTGQVNDG--AEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKR

Query:  SSGGLEPVAEENPWPHHSDPNFKLARLSENDPDLLEETALTQTQVTQAAIKHPPADKITDSIRM
        SSGGLEPVAEENPW HHSDPNFKLARLSENDPDLL ETA TQTQVTQ AIKHPPADKIT+SIRM
Subjt:  SSGGLEPVAEENPWPHHSDPNFKLARLSENDPDLLEETALTQTQVTQAAIKHPPADKITDSIRM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCCTTTTGAAGATCATTACAGTGGAGTTGGTTCTCAGTCGTTTGGAGGTTCCATGGAGAAGCTAATGACCGGACAAGTCAATGATGGTGCCGAGATCCCTCTGGA
AGAACTTGGACCCAACATCATGGATAATGTTATGGAGATGGCTGAAAGAAATCAAATGGGTACACCTGGAAATTCCGGATTTGGAGTGAGGTCAGTTTCAAGCTCAGCAT
CTGAACATGATGTGCTATCAAAAAATTCAGGGACTGATTCTGTGCGGTTCAACAAGAAAAGACCTTATTCTTCATCGAAACGAAGTAGCGGAGGCCTCGAACCTGTAGCT
GAGGAGAATCCATGGCCTCATCACTCTGATCCAAATTTCAAGTTAGCGAGGTTGTCTGAAAATGATCCAGATTTATTGGAAGAAACTGCATTGACACAAACTCAAGTTAC
TCAAGCTGCTATCAAGCATCCTCCTGCTGACAAGATAACTGATTCCATTCGAATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCCTTTTGAAGATCATTACAGTGGAGTTGGTTCTCAGTCGTTTGGAGGTTCCATGGAGAAGCTAATGACCGGACAAGTCAATGATGGTGCCGAGATCCCTCTGGA
AGAACTTGGACCCAACATCATGGATAATGTTATGGAGATGGCTGAAAGAAATCAAATGGGTACACCTGGAAATTCCGGATTTGGAGTGAGGTCAGTTTCAAGCTCAGCAT
CTGAACATGATGTGCTATCAAAAAATTCAGGGACTGATTCTGTGCGGTTCAACAAGAAAAGACCTTATTCTTCATCGAAACGAAGTAGCGGAGGCCTCGAACCTGTAGCT
GAGGAGAATCCATGGCCTCATCACTCTGATCCAAATTTCAAGTTAGCGAGGTTGTCTGAAAATGATCCAGATTTATTGGAAGAAACTGCATTGACACAAACTCAAGTTAC
TCAAGCTGCTATCAAGCATCCTCCTGCTGACAAGATAACTGATTCCATTCGAATGTAA
Protein sequenceShow/hide protein sequence
MKPFEDHYSGVGSQSFGGSMEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVA
EENPWPHHSDPNFKLARLSENDPDLLEETALTQTQVTQAAIKHPPADKITDSIRM