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PI0005960 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005960
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr07:8628190..8629661
RNA-Seq ExpressionPI0005960
SyntenyPI0005960
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041264.1 hypothetical protein E6C27_scaffold128G002490 [Cucumis melo var. makuwa]1.2e-2138.69Show/hide
Query:  FDVEAINNLFELPNDVETLGQKYVVSPTKRMAREALEVITWSGAAWEITRTEKYQLYPHQLTTEASAWLFFIKKKIFPTHHDNTINLESAILLYSILTKK
        F  +AIN L+ L N+   +G     +P  R  ++ALE I W G  W+   TEKYQL+P+ L TE S WL FIKK I PT HD+TI++E  +LLY      
Subjt:  FDVEAINNLFELPNDVETLGQKYVVSPTKRMAREALEVITWSGAAWEITRTEKYQLYPHQLTTEASAWLFFIKKKIFPTHHDNTINLESAILLYSILTKK

Query:  RINLGDLIATSILSWMQAPKGAMPFLFTVKALCVKVMPFLCAMNIVSIPGGLCNQISFNCMITFHAYK
        + N  ++    +++W++ P GA PFL   K L +K  P L     V +  G+C   + +  IT H  K
Subjt:  RINLGDLIATSILSWMQAPKGAMPFLFTVKALCVKVMPFLCAMNIVSIPGGLCNQISFNCMITFHAYK

KAA0049609.1 transposase [Cucumis melo var. makuwa]6.3e-2850Show/hide
Query:  FDVEAINNLFELPNDVETL-GQKYVVSPTKRMAREALEVITWSGAAWEITRTEKYQLYPHQLTTEASAWLFFIKKKIFPTHHDNTINLESAILLYSILTK
        F  E IN L++LPND+    GQ+ +V   +  A++ +++I W  A    T T + QL+PHQLT EA+ WLFFIKKKIFPTHHD+TI  E A++LY I  K
Subjt:  FDVEAINNLFELPNDVETL-GQKYVVSPTKRMAREALEVITWSGAAWEITRTEKYQLYPHQLTTEASAWLFFIKKKIFPTHHDNTINLESAILLYSILTK

Query:  KRINLGDLIATSILSWMQAPKGAMPFLFTVKALCVKVM
        K  NLG ++  + LSWM+ PK A PF  TVK LC+K +
Subjt:  KRINLGDLIATSILSWMQAPKGAMPFLFTVKALCVKVM

KAA0062748.1 hypothetical protein E6C27_scaffold382G00810 [Cucumis melo var. makuwa]3.0e-2239.77Show/hide
Query:  SFDVEAINNLFELPNDVETLG-QKYVVSPTKRMAREALEVITWSGAAWEITRTEKYQLYPHQLTTEASAWLFFIKKKIFPTHHDNTINLESAILLYSILT
        SF+++AIN L+ELP+D +    Q + + P + + +  L+VI W GA WE   T + QLYPHQLT EA+ WLFFIKKKIFPT HD+T  L  +I   SI  
Subjt:  SFDVEAINNLFELPNDVETLG-QKYVVSPTKRMAREALEVITWSGAAWEITRTEKYQLYPHQLTTEASAWLFFIKKKIFPTHHDNTINLESAILLYSILT

Query:  KKRINLGDLIATSILSWMQAPKGAMPFLFTVKALCVKVMPFLCAMNIVSIPGGLCNQISFNCMITFHAYKE
         +   LG   A        AP+       T+  LC+K +  L  +   ++ GG CN    N +I  H  +E
Subjt:  KKRINLGDLIATSILSWMQAPKGAMPFLFTVKALCVKVMPFLCAMNIVSIPGGLCNQISFNCMITFHAYKE

KAA0062900.1 gag/pol protein [Cucumis melo var. makuwa]1.8e-3048Show/hide
Query:  FDVEAINNLFELPNDVETLGQKYVVSPTKRMAREALEVITWSGAAWEITRTE-KYQLYPHQLTTEASAWLFFIKKKIFPTHHDNTINLESAILLYSILTK
        F+VE IN L+  PND E LGQ+ V   TK +A+EAL+V+ W G   E+   + +YQLYPH LTT+A+ W+FF K KIFPT +D+TI+++  ++LY I+ K
Subjt:  FDVEAINNLFELPNDVETLGQKYVVSPTKRMAREALEVITWSGAAWEITRTE-KYQLYPHQLTTEASAWLFFIKKKIFPTHHDNTINLESAILLYSILTK

Query:  KRINLGDLIATSILSWMQAPKGAMPFLFTVKALCVKVMPFLCAMNIVSIP
        K INL ++I  +IL+WM+ PK AMPF   ++ LC+K +P L      +IP
Subjt:  KRINLGDLIATSILSWMQAPKGAMPFLFTVKALCVKVMPFLCAMNIVSIP

TYK15967.1 hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa]6.3e-2850Show/hide
Query:  FDVEAINNLFELPNDVETL-GQKYVVSPTKRMAREALEVITWSGAAWEITRTEKYQLYPHQLTTEASAWLFFIKKKIFPTHHDNTINLESAILLYSILTK
        F  E IN L++LPND+    GQ+ +V   +  A++ +++I W  A    T T + QL+PHQLT EA+ WLFFIKKKIFPTHHD+TI  E A++LY I  K
Subjt:  FDVEAINNLFELPNDVETL-GQKYVVSPTKRMAREALEVITWSGAAWEITRTEKYQLYPHQLTTEASAWLFFIKKKIFPTHHDNTINLESAILLYSILTK

Query:  KRINLGDLIATSILSWMQAPKGAMPFLFTVKALCVKVM
        K  NLG ++  + LSWM+ PK A PF  TVK LC+K +
Subjt:  KRINLGDLIATSILSWMQAPKGAMPFLFTVKALCVKVM

TrEMBL top hitse value%identityAlignment
A0A5A7U806 Transposase3.1e-2850Show/hide
Query:  FDVEAINNLFELPNDVETL-GQKYVVSPTKRMAREALEVITWSGAAWEITRTEKYQLYPHQLTTEASAWLFFIKKKIFPTHHDNTINLESAILLYSILTK
        F  E IN L++LPND+    GQ+ +V   +  A++ +++I W  A    T T + QL+PHQLT EA+ WLFFIKKKIFPTHHD+TI  E A++LY I  K
Subjt:  FDVEAINNLFELPNDVETL-GQKYVVSPTKRMAREALEVITWSGAAWEITRTEKYQLYPHQLTTEASAWLFFIKKKIFPTHHDNTINLESAILLYSILTK

Query:  KRINLGDLIATSILSWMQAPKGAMPFLFTVKALCVKVM
        K  NLG ++  + LSWM+ PK A PF  TVK LC+K +
Subjt:  KRINLGDLIATSILSWMQAPKGAMPFLFTVKALCVKVM

A0A5A7V6M5 Gag/pol protein8.6e-3148Show/hide
Query:  FDVEAINNLFELPNDVETLGQKYVVSPTKRMAREALEVITWSGAAWEITRTE-KYQLYPHQLTTEASAWLFFIKKKIFPTHHDNTINLESAILLYSILTK
        F+VE IN L+  PND E LGQ+ V   TK +A+EAL+V+ W G   E+   + +YQLYPH LTT+A+ W+FF K KIFPT +D+TI+++  ++LY I+ K
Subjt:  FDVEAINNLFELPNDVETLGQKYVVSPTKRMAREALEVITWSGAAWEITRTE-KYQLYPHQLTTEASAWLFFIKKKIFPTHHDNTINLESAILLYSILTK

Query:  KRINLGDLIATSILSWMQAPKGAMPFLFTVKALCVKVMPFLCAMNIVSIP
        K INL ++I  +IL+WM+ PK AMPF   ++ LC+K +P L      +IP
Subjt:  KRINLGDLIATSILSWMQAPKGAMPFLFTVKALCVKVMPFLCAMNIVSIP

A0A5D3CBF2 Uncharacterized protein1.5e-2239.77Show/hide
Query:  SFDVEAINNLFELPNDVETLG-QKYVVSPTKRMAREALEVITWSGAAWEITRTEKYQLYPHQLTTEASAWLFFIKKKIFPTHHDNTINLESAILLYSILT
        SF+++AIN L+ELP+D +    Q + + P + + +  L+VI W GA WE   T + QLYPHQLT EA+ WLFFIKKKIFPT HD+T  L  +I   SI  
Subjt:  SFDVEAINNLFELPNDVETLG-QKYVVSPTKRMAREALEVITWSGAAWEITRTEKYQLYPHQLTTEASAWLFFIKKKIFPTHHDNTINLESAILLYSILT

Query:  KKRINLGDLIATSILSWMQAPKGAMPFLFTVKALCVKVMPFLCAMNIVSIPGGLCNQISFNCMITFHAYKE
         +   LG   A        AP+       T+  LC+K +  L  +   ++ GG CN    N +I  H  +E
Subjt:  KKRINLGDLIATSILSWMQAPKGAMPFLFTVKALCVKVMPFLCAMNIVSIPGGLCNQISFNCMITFHAYKE

A0A5D3CVL7 Uncharacterized protein3.1e-2850Show/hide
Query:  FDVEAINNLFELPNDVETL-GQKYVVSPTKRMAREALEVITWSGAAWEITRTEKYQLYPHQLTTEASAWLFFIKKKIFPTHHDNTINLESAILLYSILTK
        F  E IN L++LPND+    GQ+ +V   +  A++ +++I W  A    T T + QL+PHQLT EA+ WLFFIKKKIFPTHHD+TI  E A++LY I  K
Subjt:  FDVEAINNLFELPNDVETL-GQKYVVSPTKRMAREALEVITWSGAAWEITRTEKYQLYPHQLTTEASAWLFFIKKKIFPTHHDNTINLESAILLYSILTK

Query:  KRINLGDLIATSILSWMQAPKGAMPFLFTVKALCVKVM
        K  NLG ++  + LSWM+ PK A PF  TVK LC+K +
Subjt:  KRINLGDLIATSILSWMQAPKGAMPFLFTVKALCVKVM

A0A5D3CW17 Uncharacterized protein5.6e-2238.69Show/hide
Query:  FDVEAINNLFELPNDVETLGQKYVVSPTKRMAREALEVITWSGAAWEITRTEKYQLYPHQLTTEASAWLFFIKKKIFPTHHDNTINLESAILLYSILTKK
        F  +AIN L+ L N+   +G     +P  R  ++ALE I W G  W+   TEKYQL+P+ L TE S WL FIKK I PT HD+TI++E  +LLY      
Subjt:  FDVEAINNLFELPNDVETLGQKYVVSPTKRMAREALEVITWSGAAWEITRTEKYQLYPHQLTTEASAWLFFIKKKIFPTHHDNTINLESAILLYSILTKK

Query:  RINLGDLIATSILSWMQAPKGAMPFLFTVKALCVKVMPFLCAMNIVSIPGGLCNQISFNCMITFHAYK
        + N  ++    +++W++ P GA PFL   K L +K  P L     V +  G+C   + +  IT H  K
Subjt:  RINLGDLIATSILSWMQAPKGAMPFLFTVKALCVKVMPFLCAMNIVSIPGGLCNQISFNCMITFHAYK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTTTGAGAACAAACTTCATTCTGGCGTTTTAACTCCGTCATTTACATTCCGAAAGGAAGAAACCTCTTGTTCCGCTTATACTTGGACGAATAAGAGGAAAACTTG
TACGATAAACGATTCACGATTGCTTGGACATGTTAGTCACCATCGCGTACTTCTAGTTCGCGTAACCACTCTGCGATCCACATTCCACAATCCATCACCATTCCATATCT
CCATTTCATTTCATCACATACCATCCATCATCCATCCATCTTTCATCCCATCAATCATCCAACAATCATTTATCATACAACCAAGTTTCGACGTAGAGGCCATCAACAAT
CTATTTGAATTGCCCAACGATGTTGAAACGCTTGGGCAGAAATATGTGGTTAGTCCAACGAAGAGAATGGCCCGTGAAGCATTGGAAGTCATCACCTGGTCTGGAGCCGC
ATGGGAAATCACACGGACAGAGAAGTATCAACTTTATCCACACCAGCTAACCACAGAGGCAAGTGCGTGGCTCTTCTTCATCAAAAAGAAGATATTCCCTACGCACCATG
ACAACACCATTAACTTAGAGTCAGCGATACTTCTCTATAGCATACTAACAAAGAAGCGCATTAATCTCGGTGATCTGATAGCTACATCCATTCTATCTTGGATGCAAGCT
CCCAAGGGCGCCATGCCCTTCCTATTTACAGTCAAAGCCCTCTGCGTGAAGGTCATGCCATTTCTATGCGCCATGAACATAGTCTCAATTCCAGGCGGCCTGTGTAATCA
AATTTCTTTTAATTGCATGATCACCTTCCATGCCTACAAGGAAATGGAAAGGCAGTCAAAGACATTAGGTGACACAGCAACTGAAGGCGTGGCCCAGGCAGATCGCAAGC
AAAAAGCCCCAGCTGTCGCATCAACCCCTCAACCGAAAGTAAAAAAACCAAAGGTTGATGCGGCAAGACAACTCCAGCCACTCAAAATCATCCACCCCTCTTCCCGCCCA
ACCAAAAGAACTCCCGCCAAAATCCAAAGAGATTCCAACCTCTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGTTTGAGAACAAACTTCATTCTGGCGTTTTAACTCCGTCATTTACATTCCGAAAGGAAGAAACCTCTTGTTCCGCTTATACTTGGACGAATAAGAGGAAAACTTG
TACGATAAACGATTCACGATTGCTTGGACATGTTAGTCACCATCGCGTACTTCTAGTTCGCGTAACCACTCTGCGATCCACATTCCACAATCCATCACCATTCCATATCT
CCATTTCATTTCATCACATACCATCCATCATCCATCCATCTTTCATCCCATCAATCATCCAACAATCATTTATCATACAACCAAGTTTCGACGTAGAGGCCATCAACAAT
CTATTTGAATTGCCCAACGATGTTGAAACGCTTGGGCAGAAATATGTGGTTAGTCCAACGAAGAGAATGGCCCGTGAAGCATTGGAAGTCATCACCTGGTCTGGAGCCGC
ATGGGAAATCACACGGACAGAGAAGTATCAACTTTATCCACACCAGCTAACCACAGAGGCAAGTGCGTGGCTCTTCTTCATCAAAAAGAAGATATTCCCTACGCACCATG
ACAACACCATTAACTTAGAGTCAGCGATACTTCTCTATAGCATACTAACAAAGAAGCGCATTAATCTCGGTGATCTGATAGCTACATCCATTCTATCTTGGATGCAAGCT
CCCAAGGGCGCCATGCCCTTCCTATTTACAGTCAAAGCCCTCTGCGTGAAGGTCATGCCATTTCTATGCGCCATGAACATAGTCTCAATTCCAGGCGGCCTGTGTAATCA
AATTTCTTTTAATTGCATGATCACCTTCCATGCCTACAAGGAAATGGAAAGGCAGTCAAAGACATTAGGTGACACAGCAACTGAAGGCGTGGCCCAGGCAGATCGCAAGC
AAAAAGCCCCAGCTGTCGCATCAACCCCTCAACCGAAAGTAAAAAAACCAAAGGTTGATGCGGCAAGACAACTCCAGCCACTCAAAATCATCCACCCCTCTTCCCGCCCA
ACCAAAAGAACTCCCGCCAAAATCCAAAGAGATTCCAACCTCTCTTAA
Protein sequenceShow/hide protein sequence
MKFENKLHSGVLTPSFTFRKEETSCSAYTWTNKRKTCTINDSRLLGHVSHHRVLLVRVTTLRSTFHNPSPFHISISFHHIPSIIHPSFIPSIIQQSFIIQPSFDVEAINN
LFELPNDVETLGQKYVVSPTKRMAREALEVITWSGAAWEITRTEKYQLYPHQLTTEASAWLFFIKKKIFPTHHDNTINLESAILLYSILTKKRINLGDLIATSILSWMQA
PKGAMPFLFTVKALCVKVMPFLCAMNIVSIPGGLCNQISFNCMITFHAYKEMERQSKTLGDTATEGVAQADRKQKAPAVASTPQPKVKKPKVDAARQLQPLKIIHPSSRP
TKRTPAKIQRDSNLS