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PI0005963 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005963
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionprotein POOR HOMOLOGOUS SYNAPSIS 1
Genome locationchr03:202897..204204
RNA-Seq ExpressionPI0005963
SyntenyPI0005963
Gene Ontology termsGO:0030261 - chromosome condensation (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061066.1 condensin-2 complex subunit H2 [Cucumis melo var. makuwa]3.0e-1483.64Show/hide
Query:  SHEGTVFFLADPKFALRFSTSKEIEPLVSIHKQMSKKASDIQPISCDFKSLISAR
        SHEGTV FLADPKFA R STSKEIEPLVSI KQMS+KASDIQPISC FKS IS +
Subjt:  SHEGTVFFLADPKFALRFSTSKEIEPLVSIHKQMSKKASDIQPISCDFKSLISAR

XP_022951934.1 protein POOR HOMOLOGOUS SYNAPSIS 1 [Cucurbita moschata]5.6e-0573.81Show/hide
Query:  KFALRFSTSKEIEPLVSIHKQMSKKASDIQPISCDFKSLISA
        KFALRFSTS EI+  VSI K+MSK A DIQPISCDF S IS+
Subjt:  KFALRFSTSKEIEPLVSIHKQMSKKASDIQPISCDFKSLISA

XP_023002655.1 protein POOR HOMOLOGOUS SYNAPSIS 1 [Cucurbita maxima]5.6e-0573.81Show/hide
Query:  KFALRFSTSKEIEPLVSIHKQMSKKASDIQPISCDFKSLISA
        KFALRFSTS EI+  VSI K+MSK A DIQPISCDF S IS+
Subjt:  KFALRFSTSKEIEPLVSIHKQMSKKASDIQPISCDFKSLISA

XP_023538055.1 protein POOR HOMOLOGOUS SYNAPSIS 1 [Cucurbita pepo subsp. pepo]5.6e-0573.81Show/hide
Query:  KFALRFSTSKEIEPLVSIHKQMSKKASDIQPISCDFKSLISA
        KFALRFSTS EI+  VSI K+MSK A DIQPISCDF S IS+
Subjt:  KFALRFSTSKEIEPLVSIHKQMSKKASDIQPISCDFKSLISA

TrEMBL top hitse value%identityAlignment
A0A5A7V3H6 Condensin-2 complex subunit H21.4e-1483.64Show/hide
Query:  SHEGTVFFLADPKFALRFSTSKEIEPLVSIHKQMSKKASDIQPISCDFKSLISAR
        SHEGTV FLADPKFA R STSKEIEPLVSI KQMS+KASDIQPISC FKS IS +
Subjt:  SHEGTVFFLADPKFALRFSTSKEIEPLVSIHKQMSKKASDIQPISCDFKSLISAR

A0A6J1GK72 protein POOR HOMOLOGOUS SYNAPSIS 12.7e-0573.81Show/hide
Query:  KFALRFSTSKEIEPLVSIHKQMSKKASDIQPISCDFKSLISA
        KFALRFSTS EI+  VSI K+MSK A DIQPISCDF S IS+
Subjt:  KFALRFSTSKEIEPLVSIHKQMSKKASDIQPISCDFKSLISA

A0A6J1KPK1 protein POOR HOMOLOGOUS SYNAPSIS 12.7e-0573.81Show/hide
Query:  KFALRFSTSKEIEPLVSIHKQMSKKASDIQPISCDFKSLISA
        KFALRFSTS EI+  VSI K+MSK A DIQPISCDF S IS+
Subjt:  KFALRFSTSKEIEPLVSIHKQMSKKASDIQPISCDFKSLISA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTATTGAAAGGAAAAGTATATCTTAACCATATGACAGCAGGGCTTGCTCGTTCACAAATCTTTGCCTTATTTTCCAGGTTATTGTATAAAGCAGGAGAAGGGTT
GTTGGAAGAGGGAAGAATGGCGGAATTTGAAAGCTTGTTTTCTGAGGATGAGTTTGAATTGTTGAACCTCACAAGTCACGAGGGCACTGTTTTTTTCTTGGCAGATCCAA
AATTTGCCCTAAGATTTTCAACGTCCAAGGAAATCGAACCGCTTGTGAGCATTCACAAGCAAATGTCAAAGAAAGCAAGTGATATACAGCCAATAAGCTGCGACTTCAAG
TCTCTGATTTCAGCACGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGTATTGAAAGGAAAAGTATATCTTAACCATATGACAGCAGGGCTTGCTCGTTCACAAATCTTTGCCTTATTTTCCAGGTTATTGTATAAAGCAGGAGAAGGGTT
GTTGGAAGAGGGAAGAATGGCGGAATTTGAAAGCTTGTTTTCTGAGGATGAGTTTGAATTGTTGAACCTCACAAGTCACGAGGGCACTGTTTTTTTCTTGGCAGATCCAA
AATTTGCCCTAAGATTTTCAACGTCCAAGGAAATCGAACCGCTTGTGAGCATTCACAAGCAAATGTCAAAGAAAGCAAGTGATATACAGCCAATAAGCTGCGACTTCAAG
TCTCTGATTTCAGCACGCTAA
Protein sequenceShow/hide protein sequence
MDVLKGKVYLNHMTAGLARSQIFALFSRLLYKAGEGLLEEGRMAEFESLFSEDEFELLNLTSHEGTVFFLADPKFALRFSTSKEIEPLVSIHKQMSKKASDIQPISCDFK
SLISAR