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PI0005981 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005981
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr03:11582354..11584603
RNA-Seq ExpressionPI0005981
SyntenyPI0005981
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]2.8e-6379.74Show/hide
Query:  MTTLLTYFVQGGPLKVTKCGVCGLVGHPNDKCPELIEDVNVIQKYDSHGNTYNSGWRGNPNLRWGNDNQRPTQATSSFSNQGMTLENIVKALATNTLSFQ
        MTTLLT FVQG PLKVTKCGVC LVGHPNDKCPE+IEDVN+++KYD +GNTYNSGWR NPNLRWGNDNQ+ TQA  + SNQG  LE+I+KALATNTLSFQ
Subjt:  MTTLLTYFVQGGPLKVTKCGVCGLVGHPNDKCPELIEDVNVIQKYDSHGNTYNSGWRGNPNLRWGNDNQRPTQATSSFSNQGMTLENIVKALATNTLSFQ

Query:  QEMKQHMTQLTTATSKLEGKGKLPAQPDHANLSAISLRSDKILDTPSIEDKKV
        QEMKQ MTQLTTA SK++GKGKLPAQPD+AN+SAISLRS KILDTP+ ++KKV
Subjt:  QEMKQHMTQLTTATSKLEGKGKLPAQPDHANLSAISLRSDKILDTPSIEDKKV

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.3e-6278.95Show/hide
Query:  MTTLLTYFVQGGPLKVTKCGVCGLVGHPNDKCPELIEDVNVIQKYDSHGNTYNSGWRGNPNLRWGNDNQRPTQATSSFSNQGMTLENIVKALATNTLSFQ
        MTTLLT FVQG PLKVTKCGVCGLVGHPNDKCPE+IEDVN+++KYD HGNTYNSGWR NPNLRWGNDNQ+ TQA S+ SNQG  LE+I+KALATNTLSFQ
Subjt:  MTTLLTYFVQGGPLKVTKCGVCGLVGHPNDKCPELIEDVNVIQKYDSHGNTYNSGWRGNPNLRWGNDNQRPTQATSSFSNQGMTLENIVKALATNTLSFQ

Query:  QEMKQHMTQLTTATSKLEGKGKLPAQPDHANLSAISLRSDKILDTPSIEDKK
        QEMKQ MTQLTTA SK++GKGKL AQ ++AN+SA+SLRS KILDTP+ ++KK
Subjt:  QEMKQHMTQLTTATSKLEGKGKLPAQPDHANLSAISLRSDKILDTPSIEDKK

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.3e-6480.39Show/hide
Query:  MTTLLTYFVQGGPLKVTKCGVCGLVGHPNDKCPELIEDVNVIQKYDSHGNTYNSGWRGNPNLRWGNDNQRPTQATSSFSNQGMTLENIVKALATNTLSFQ
        MT LLT FVQG PLKVTKCGVCGLVGHPNDKCPE+IEDVN++QKYD HGNTYNSGWR NPNLRWGNDNQ+ TQA  + SNQG  LE+I+KALATNTLSFQ
Subjt:  MTTLLTYFVQGGPLKVTKCGVCGLVGHPNDKCPELIEDVNVIQKYDSHGNTYNSGWRGNPNLRWGNDNQRPTQATSSFSNQGMTLENIVKALATNTLSFQ

Query:  QEMKQHMTQLTTATSKLEGKGKLPAQPDHANLSAISLRSDKILDTPSIEDKKV
        QEMKQ MTQLTT  SK++GKGKL AQPDHAN+S ISLRSDKILDTP+ ++KKV
Subjt:  QEMKQHMTQLTTATSKLEGKGKLPAQPDHANLSAISLRSDKILDTPSIEDKKV

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-6277.78Show/hide
Query:  MTTLLTYFVQGGPLKVTKCGVCGLVGHPNDKCPELIEDVNVIQKYDSHGNTYNSGWRGNPNLRWGNDNQRPTQATSSFSNQGMTLENIVKALATNTLSFQ
        MTTLLT FVQG P KVTKCGVCGLVGHPNDKCPE+IED+N++++YD HGNTYN GWR  PNLRWGND Q  TQA S+ SNQG  LE+I+KAL TNTLSFQ
Subjt:  MTTLLTYFVQGGPLKVTKCGVCGLVGHPNDKCPELIEDVNVIQKYDSHGNTYNSGWRGNPNLRWGNDNQRPTQATSSFSNQGMTLENIVKALATNTLSFQ

Query:  QEMKQHMTQLTTATSKLEGKGKLPAQPDHANLSAISLRSDKILDTPSIEDKKV
        QEMKQ MTQLTTA SK++GKGKLPAQPDHAN+SAISLRS KILDTP+ ++KKV
Subjt:  QEMKQHMTQLTTATSKLEGKGKLPAQPDHANLSAISLRSDKILDTPSIEDKKV

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]4.3e-6480.39Show/hide
Query:  MTTLLTYFVQGGPLKVTKCGVCGLVGHPNDKCPELIEDVNVIQKYDSHGNTYNSGWRGNPNLRWGNDNQRPTQATSSFSNQGMTLENIVKALATNTLSFQ
        MT LLT FVQG PLKVTKCGVCGLVGHPNDKCPE+IEDVN++QKYD HGNTYNSGWR NPNLRWGNDNQ+ TQA  + SNQG  LE+I+KALATNTLSFQ
Subjt:  MTTLLTYFVQGGPLKVTKCGVCGLVGHPNDKCPELIEDVNVIQKYDSHGNTYNSGWRGNPNLRWGNDNQRPTQATSSFSNQGMTLENIVKALATNTLSFQ

Query:  QEMKQHMTQLTTATSKLEGKGKLPAQPDHANLSAISLRSDKILDTPSIEDKKV
        QEMKQ MTQLTT  SK++GKGKL AQPDHAN+S ISLRSDKILDTP+ ++KKV
Subjt:  QEMKQHMTQLTTATSKLEGKGKLPAQPDHANLSAISLRSDKILDTPSIEDKKV

TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919102.1e-6480.39Show/hide
Query:  MTTLLTYFVQGGPLKVTKCGVCGLVGHPNDKCPELIEDVNVIQKYDSHGNTYNSGWRGNPNLRWGNDNQRPTQATSSFSNQGMTLENIVKALATNTLSFQ
        MT LLT FVQG PLKVTKCGVCGLVGHPNDKCPE+IEDVN++QKYD HGNTYNSGWR NPNLRWGNDNQ+ TQA  + SNQG  LE+I+KALATNTLSFQ
Subjt:  MTTLLTYFVQGGPLKVTKCGVCGLVGHPNDKCPELIEDVNVIQKYDSHGNTYNSGWRGNPNLRWGNDNQRPTQATSSFSNQGMTLENIVKALATNTLSFQ

Query:  QEMKQHMTQLTTATSKLEGKGKLPAQPDHANLSAISLRSDKILDTPSIEDKKV
        QEMKQ MTQLTT  SK++GKGKL AQPDHAN+S ISLRSDKILDTP+ ++KKV
Subjt:  QEMKQHMTQLTTATSKLEGKGKLPAQPDHANLSAISLRSDKILDTPSIEDKKV

A0A5D3CFE7 Retrotransposon gag protein8.7e-6377.78Show/hide
Query:  MTTLLTYFVQGGPLKVTKCGVCGLVGHPNDKCPELIEDVNVIQKYDSHGNTYNSGWRGNPNLRWGNDNQRPTQATSSFSNQGMTLENIVKALATNTLSFQ
        MTTLLT FVQG P KVTKCGVCGLVGHPNDKCPE+IED+N++++YD HGNTYN GWR  PNLRWGND Q  TQA S+ SNQG  LE+I+KAL TNTLSFQ
Subjt:  MTTLLTYFVQGGPLKVTKCGVCGLVGHPNDKCPELIEDVNVIQKYDSHGNTYNSGWRGNPNLRWGNDNQRPTQATSSFSNQGMTLENIVKALATNTLSFQ

Query:  QEMKQHMTQLTTATSKLEGKGKLPAQPDHANLSAISLRSDKILDTPSIEDKKV
        QEMKQ MTQLTTA SK++GKGKLPAQPDHAN+SAISLRS KILDTP+ ++KKV
Subjt:  QEMKQHMTQLTTATSKLEGKGKLPAQPDHANLSAISLRSDKILDTPSIEDKKV

A0A5D3CRR8 Retrotransposon gag protein1.1e-6278.95Show/hide
Query:  MTTLLTYFVQGGPLKVTKCGVCGLVGHPNDKCPELIEDVNVIQKYDSHGNTYNSGWRGNPNLRWGNDNQRPTQATSSFSNQGMTLENIVKALATNTLSFQ
        MTTLLT FVQG PLKVTKCGVCGLVGHPNDKCPE+IEDVN+++KYD HGNTYNSGWR NPNLRWGNDNQ+ TQA S+ SNQG  LE+I+KALATNTLSFQ
Subjt:  MTTLLTYFVQGGPLKVTKCGVCGLVGHPNDKCPELIEDVNVIQKYDSHGNTYNSGWRGNPNLRWGNDNQRPTQATSSFSNQGMTLENIVKALATNTLSFQ

Query:  QEMKQHMTQLTTATSKLEGKGKLPAQPDHANLSAISLRSDKILDTPSIEDKK
        QEMKQ MTQLTTA SK++GKGKL AQ ++AN+SA+SLRS KILDTP+ ++KK
Subjt:  QEMKQHMTQLTTATSKLEGKGKLPAQPDHANLSAISLRSDKILDTPSIEDKK

A0A5D3DCG3 Retrotransposon gag protein2.1e-6480.39Show/hide
Query:  MTTLLTYFVQGGPLKVTKCGVCGLVGHPNDKCPELIEDVNVIQKYDSHGNTYNSGWRGNPNLRWGNDNQRPTQATSSFSNQGMTLENIVKALATNTLSFQ
        MT LLT FVQG PLKVTKCGVCGLVGHPNDKCPE+IEDVN++QKYD HGNTYNSGWR NPNLRWGNDNQ+ TQA  + SNQG  LE+I+KALATNTLSFQ
Subjt:  MTTLLTYFVQGGPLKVTKCGVCGLVGHPNDKCPELIEDVNVIQKYDSHGNTYNSGWRGNPNLRWGNDNQRPTQATSSFSNQGMTLENIVKALATNTLSFQ

Query:  QEMKQHMTQLTTATSKLEGKGKLPAQPDHANLSAISLRSDKILDTPSIEDKKV
        QEMKQ MTQLTT  SK++GKGKL AQPDHAN+S ISLRSDKILDTP+ ++KKV
Subjt:  QEMKQHMTQLTTATSKLEGKGKLPAQPDHANLSAISLRSDKILDTPSIEDKKV

E5GBZ4 Retrotransposon gag protein1.3e-6379.74Show/hide
Query:  MTTLLTYFVQGGPLKVTKCGVCGLVGHPNDKCPELIEDVNVIQKYDSHGNTYNSGWRGNPNLRWGNDNQRPTQATSSFSNQGMTLENIVKALATNTLSFQ
        MTTLLT FVQG PLKVTKCGVC LVGHPNDKCPE+IEDVN+++KYD +GNTYNSGWR NPNLRWGNDNQ+ TQA  + SNQG  LE+I+KALATNTLSFQ
Subjt:  MTTLLTYFVQGGPLKVTKCGVCGLVGHPNDKCPELIEDVNVIQKYDSHGNTYNSGWRGNPNLRWGNDNQRPTQATSSFSNQGMTLENIVKALATNTLSFQ

Query:  QEMKQHMTQLTTATSKLEGKGKLPAQPDHANLSAISLRSDKILDTPSIEDKKV
        QEMKQ MTQLTTA SK++GKGKLPAQPD+AN+SAISLRS KILDTP+ ++KKV
Subjt:  QEMKQHMTQLTTATSKLEGKGKLPAQPDHANLSAISLRSDKILDTPSIEDKKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAACTCTTCTTACTTATTTTGTGCAAGGAGGTCCTCTCAAAGTAACCAAGTGTGGAGTTTGTGGCTTGGTTGGACATCCCAATGACAAATGTCCCGAGTTGATCGA
GGATGTGAATGTCATTCAAAAGTATGACTCCCATGGTAATACATACAATTCGGGATGGAGAGGCAACCCAAACTTGAGATGGGGGAATGACAACCAAAGGCCCACTCAAG
CAACATCCTCCTTTTCAAACCAAGGTATGACCCTTGAAAACATAGTCAAAGCTTTAGCTACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACACATGACTCAACTT
ACTACTGCCACAAGCAAGTTGGAAGGAAAAGGCAAGCTTCCAGCCCAACCAGACCATGCCAACCTGAGTGCCATCTCACTAAGAAGTGATAAGATTCTCGACACCCCTTC
TATTGAAGACAAAAAGGTACAATGGGAAAGGCACTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAACTCTTCTTACTTATTTTGTGCAAGGAGGTCCTCTCAAAGTAACCAAGTGTGGAGTTTGTGGCTTGGTTGGACATCCCAATGACAAATGTCCCGAGTTGATCGA
GGATGTGAATGTCATTCAAAAGTATGACTCCCATGGTAATACATACAATTCGGGATGGAGAGGCAACCCAAACTTGAGATGGGGGAATGACAACCAAAGGCCCACTCAAG
CAACATCCTCCTTTTCAAACCAAGGTATGACCCTTGAAAACATAGTCAAAGCTTTAGCTACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACACATGACTCAACTT
ACTACTGCCACAAGCAAGTTGGAAGGAAAAGGCAAGCTTCCAGCCCAACCAGACCATGCCAACCTGAGTGCCATCTCACTAAGAAGTGATAAGATTCTCGACACCCCTTC
TATTGAAGACAAAAAGGTACAATGGGAAAGGCACTAA
Protein sequenceShow/hide protein sequence
MTTLLTYFVQGGPLKVTKCGVCGLVGHPNDKCPELIEDVNVIQKYDSHGNTYNSGWRGNPNLRWGNDNQRPTQATSSFSNQGMTLENIVKALATNTLSFQQEMKQHMTQL
TTATSKLEGKGKLPAQPDHANLSAISLRSDKILDTPSIEDKKVQWERH