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PI0005987 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005987
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr12:21797091..21797333
RNA-Seq ExpressionPI0005987
SyntenyPI0005987
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]5.4e-2385.07Show/hide
Query:  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTNIQESEGI
        M SSSRA KH WTKEEEAKLVECL+ELVS+GGWRSDNGTFR GY TQLQRMMAEKLPDTNIQ S  I
Subjt:  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTNIQESEGI

KAA0043564.1 retrotransposon protein [Cucumis melo var. makuwa]6.6e-2182.81Show/hide
Query:  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTNIQES
        MTSSSRA KHTWTKEEEAKLVECL+ELVS+GGWRS+NGTFR GY  QLQRMM +KL DTNIQ S
Subjt:  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTNIQES

KAA0066605.1 retrotransposon protein [Cucumis melo var. makuwa]2.2e-2486.57Show/hide
Query:  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTNIQESEGI
        M SSSRAPKHTWTKEEEAKLVECL+ELVS+GGWRS+NGTFRPGY  QLQRMMAEKLPDTNIQ S  I
Subjt:  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTNIQESEGI

KAA0067707.1 retrotransposon protein [Cucumis melo var. makuwa]8.6e-2181.25Show/hide
Query:  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTNIQES
        M SSSRA KHTWTKEEEA+L ECL+ELVS+GGWRS+NGTFRPGY  QLQRMMA+KLPDT IQ S
Subjt:  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTNIQES

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]3.2e-2383.58Show/hide
Query:  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTNIQESEGI
        M S SRAPKHTWTKEEE K VECL+ELVSSGGWRSDNGTF+PGY  QLQRMMAEKLP TNIQES  I
Subjt:  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTNIQESEGI

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859531.5e-2383.58Show/hide
Query:  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTNIQESEGI
        M S SRAPKHTWTKEEE K VECL+ELVSSGGWRSDNGTF+PGY  QLQRMMAEKLP TNIQES  I
Subjt:  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTNIQESEGI

A0A5A7TJS2 Retrotransposon protein3.2e-2182.81Show/hide
Query:  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTNIQES
        MTSSSRA KHTWTKEEEAKLVECL+ELVS+GGWRS+NGTFR GY  QLQRMM +KL DTNIQ S
Subjt:  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTNIQES

A0A5A7U0H7 Retrotransposon protein1.5e-2383.58Show/hide
Query:  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTNIQESEGI
        M S SRAPKHTWTKEEE K VECL+ELVSSGGWRSDNGTF+PGY  QLQRMMAEKLP TNIQES  I
Subjt:  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTNIQESEGI

A0A5D3BZU3 Retrotransposon protein2.6e-2385.07Show/hide
Query:  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTNIQESEGI
        M SSSRA KH WTKEEEAKLVECL+ELVS+GGWRSDNGTFR GY TQLQRMMAEKLPDTNIQ S  I
Subjt:  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTNIQESEGI

A0A5D3CQS4 Retrotransposon protein1.1e-2486.57Show/hide
Query:  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTNIQESEGI
        M SSSRAPKHTWTKEEEAKLVECL+ELVS+GGWRS+NGTFRPGY  QLQRMMAEKLPDTNIQ S  I
Subjt:  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTNIQESEGI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAGTTCTTCAAGAGCACCGAAACACACATGGACTAAAGAGGAAGAAGCAAAGTTGGTTGAGTGCTTGATGGAATTGGTTTCATCTGGTGGGTGGAGGTCAGATAA
TGGGACATTTCGACCTGGATACTCGACACAATTACAACGGATGATGGCAGAGAAGTTGCCCGACACTAACATCCAAGAATCTGAAGGGATTAAAACCCTTACACAGCGGA
ATAAATTCACAGAACCTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAAGTTCTTCAAGAGCACCGAAACACACATGGACTAAAGAGGAAGAAGCAAAGTTGGTTGAGTGCTTGATGGAATTGGTTTCATCTGGTGGGTGGAGGTCAGATAA
TGGGACATTTCGACCTGGATACTCGACACAATTACAACGGATGATGGCAGAGAAGTTGCCCGACACTAACATCCAAGAATCTGAAGGGATTAAAACCCTTACACAGCGGA
ATAAATTCACAGAACCTTTTTAA
Protein sequenceShow/hide protein sequence
MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTNIQESEGIKTLTQRNKFTEPF