CuGenDBv2

Gene ID	PI0006017
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Succinate dehydrogenase assembly factor 4, mitochondrial
Genome location	chr09:318534..318868
RNA-Seq Expression	PI0006017
Synteny	PI0006017
Gene Ontology terms	GO:0034553 - mitochondrial respiratory chain complex II assembly (biological process) GO:0005739 - mitochondrion (cellular component)
InterPro domains	IPR012875 - Succinate dehydrogenase assembly factor 4

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0042555.1 succinate dehydrogenase assembly factor 4 [Cucumis melo var. makuwa]

1.8e-30

73.87

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Query:  MSSNLSRLFSSPPTLSALPAVSRLTSNSLCRFVSSSSNQQPSRSVQGVSSEEQREAGKESSPNQH---------------------EIGGPKGPEPTRYG
        MSS+LSRLFSSPPTLSALP V RLTSNSL RFVSSSSNQQPSRS QGVSSEEQREA K SSPNQH                     EIGGPKG EPTRYG
Subjt:  MSSNLSRLFSSPPTLSALPAVSRLTSNSLCRFVSSSSNQQPSRSVQGVSSEEQREAGKESSPNQH---------------------EIGGPKGPEPTRYG

Query:  DWERNGRCYDF
        DWERNGRCYDF
Subjt:  DWERNGRCYDF

KGN49871.1 hypothetical protein Csa_000062 [Cucumis sativus]

6.7e-30

72.97

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Query:  MSSNLSRLFSSPPTLSALPAVSRLTSNSLCRFVSSSSNQQPSRSVQGVSSEEQREAGKESSPNQH---------------------EIGGPKGPEPTRYG
        MSSNLSRLFSSPPTLSALPAVSRLT NSL RFVSSSSNQQPSR  +GVSSEEQREAGK SSPN+H                     EIGGPKGPEPTRYG
Subjt:  MSSNLSRLFSSPPTLSALPAVSRLTSNSLCRFVSSSSNQQPSRSVQGVSSEEQREAGKESSPNQH---------------------EIGGPKGPEPTRYG

Query:  DWERNGRCYDF
        DWER GRC DF
Subjt:  DWERNGRCYDF

XP_022957978.1 succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita moschata]

1.2e-23

63.06

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Query:  MSSNLSRLFSSPPTLSALPAVSRLTSNSLCRFVSSSSNQQPSRSVQGVSSEEQREAGKESSPNQH---------------------EIGGPKGPEPTRYG
        MSSNL+RLF SPP+L+AL AV+R TS S+ R VSSS+NQQPSR  QGV  EEQREAGK S P+QH                     E+GGPKGPEPTRYG
Subjt:  MSSNLSRLFSSPPTLSALPAVSRLTSNSLCRFVSSSSNQQPSRSVQGVSSEEQREAGKESSPNQH---------------------EIGGPKGPEPTRYG

Query:  DWERNGRCYDF
        DWERNGRCYDF
Subjt:  DWERNGRCYDF

XP_022995844.1 succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita maxima]

3.2e-24

63.06

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Query:  MSSNLSRLFSSPPTLSALPAVSRLTSNSLCRFVSSSSNQQPSRSVQGVSSEEQREAGKESSPNQH---------------------EIGGPKGPEPTRYG
        MSSNL+RLF SPP+L+AL AV+R+TS S+ R VSSS+NQQPSR  QGV  EEQREAGK S P+QH                     E+GGPKGPEPTRYG
Subjt:  MSSNLSRLFSSPPTLSALPAVSRLTSNSLCRFVSSSSNQQPSRSVQGVSSEEQREAGKESSPNQH---------------------EIGGPKGPEPTRYG

Query:  DWERNGRCYDF
        DWERNGRCYDF
Subjt:  DWERNGRCYDF

XP_023532848.1 succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita pepo subsp. pepo]

2.7e-23

62.16

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Query:  MSSNLSRLFSSPPTLSALPAVSRLTSNSLCRFVSSSSNQQPSRSVQGVSSEEQREAGKESSPNQH---------------------EIGGPKGPEPTRYG
        MSSNL+RLF SPP+L++L AV+R TS S+ R VSSS+NQQPSR  QGV  EEQREAGK S P+QH                     E+GGPKGPEPTRYG
Subjt:  MSSNLSRLFSSPPTLSALPAVSRLTSNSLCRFVSSSSNQQPSRSVQGVSSEEQREAGKESSPNQH---------------------EIGGPKGPEPTRYG

Query:  DWERNGRCYDF
        DWERNGRCYDF
Subjt:  DWERNGRCYDF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQ66 Succinate dehydrogenase assembly factor 4, mitochondrial

3.2e-30

72.97

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Query:  MSSNLSRLFSSPPTLSALPAVSRLTSNSLCRFVSSSSNQQPSRSVQGVSSEEQREAGKESSPNQH---------------------EIGGPKGPEPTRYG
        MSSNLSRLFSSPPTLSALPAVSRLT NSL RFVSSSSNQQPSR  +GVSSEEQREAGK SSPN+H                     EIGGPKGPEPTRYG
Subjt:  MSSNLSRLFSSPPTLSALPAVSRLTSNSLCRFVSSSSNQQPSRSVQGVSSEEQREAGKESSPNQH---------------------EIGGPKGPEPTRYG

Query:  DWERNGRCYDF
        DWER GRC DF
Subjt:  DWERNGRCYDF

A0A5A7TMD3 Succinate dehydrogenase assembly factor 4, mitochondrial

8.5e-31

73.87

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Query:  MSSNLSRLFSSPPTLSALPAVSRLTSNSLCRFVSSSSNQQPSRSVQGVSSEEQREAGKESSPNQH---------------------EIGGPKGPEPTRYG
        MSS+LSRLFSSPPTLSALP V RLTSNSL RFVSSSSNQQPSRS QGVSSEEQREA K SSPNQH                     EIGGPKG EPTRYG
Subjt:  MSSNLSRLFSSPPTLSALPAVSRLTSNSLCRFVSSSSNQQPSRSVQGVSSEEQREAGKESSPNQH---------------------EIGGPKGPEPTRYG

Query:  DWERNGRCYDF
        DWERNGRCYDF
Subjt:  DWERNGRCYDF

A0A6J0ZHD5 Succinate dehydrogenase assembly factor 4, mitochondrial

1.1e-09

45.22

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Query:  SNLSRLFSSPPTLS-ALPAVSRLTSNSLCRFVSSS-------SNQQPSRSVQGVSSEEQREAGKESSPNQH-------------------EIGGPKGPEP
        + LSRLFSS   LS   P++S +TS  +  F S+S       S QQP  + Q  S+EE+REA KE    ++                   E+GGP+GPEP
Subjt:  SNLSRLFSSPPTLS-ALPAVSRLTSNSLCRFVSSS-------SNQQPSRSVQGVSSEEQREAGKESSPNQH-------------------EIGGPKGPEP

Query:  TRYGDWERNGRCYDF
        TRYGDWERNGRCYDF
Subjt:  TRYGDWERNGRCYDF

A0A6J1H1T7 Succinate dehydrogenase assembly factor 4, mitochondrial

5.9e-24

63.06

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Query:  MSSNLSRLFSSPPTLSALPAVSRLTSNSLCRFVSSSSNQQPSRSVQGVSSEEQREAGKESSPNQH---------------------EIGGPKGPEPTRYG
        MSSNL+RLF SPP+L+AL AV+R TS S+ R VSSS+NQQPSR  QGV  EEQREAGK S P+QH                     E+GGPKGPEPTRYG
Subjt:  MSSNLSRLFSSPPTLSALPAVSRLTSNSLCRFVSSSSNQQPSRSVQGVSSEEQREAGKESSPNQH---------------------EIGGPKGPEPTRYG

Query:  DWERNGRCYDF
        DWERNGRCYDF
Subjt:  DWERNGRCYDF

A0A6J1K722 Succinate dehydrogenase assembly factor 4, mitochondrial

1.6e-24

63.06

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Query:  MSSNLSRLFSSPPTLSALPAVSRLTSNSLCRFVSSSSNQQPSRSVQGVSSEEQREAGKESSPNQH---------------------EIGGPKGPEPTRYG
        MSSNL+RLF SPP+L+AL AV+R+TS S+ R VSSS+NQQPSR  QGV  EEQREAGK S P+QH                     E+GGPKGPEPTRYG
Subjt:  MSSNLSRLFSSPPTLSALPAVSRLTSNSLCRFVSSSSNQQPSRSVQGVSSEEQREAGKESSPNQH---------------------EIGGPKGPEPTRYG

Query:  DWERNGRCYDF
        DWERNGRCYDF
Subjt:  DWERNGRCYDF

SwissProt top hits

e value

%identity

Alignment

Q54Y25 Succinate dehydrogenase assembly factor 4, mitochondrial

2.0e-05

51.79

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Query:  SSSNQQPSRSVQGVSSEEQREAGKESSPNQHEIGGPKGPEPTRYGDWERNGRCYDF
        S  NQQ  + ++    E+  E     +P   EIGGPKGPEPTRY DWERNGR  DF
Subjt:  SSSNQQPSRSVQGVSSEEQREAGKESSPNQHEIGGPKGPEPTRYGDWERNGRCYDF

Q5VUM1 Succinate dehydrogenase assembly factor 4, mitochondrial

1.1e-06

73.33

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Query:  SPNQHEIGGPKGPEPTRYGDWERNGRCYDF
        +P   E GGP+GPEPTRYGDWER GRC DF
Subjt:  SPNQHEIGGPKGPEPTRYGDWERNGRCYDF

Q8BTE0 Succinate dehydrogenase assembly factor 4, mitochondrial

2.4e-06

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Query:  SEEQREA----GKESSPNQHEIGGPKGPEPTRYGDWERNGRCYDF
        S E+RE       + +P   E GGPKGPEPTRYGDWER GRC DF
Subjt:  SEEQREA----GKESSPNQHEIGGPKGPEPTRYGDWERNGRCYDF

Q92J60 UPF0369 protein RC0209

1.7e-04

60.61

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Query:  KESSPNQHEIGGPKGPEPTRYGDWERNGRCYDF
        KE+ P + EIGG KG EPTRYGDW+  G+  DF
Subjt:  KESSPNQHEIGGPKGPEPTRYGDWERNGRCYDF

Q9VLU6 Succinate dehydrogenase assembly factor 4, mitochondrial

4.1e-06

68.75

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Query:  ESSPNQHEIGGPKGPEPTRYGDWERNGRCYDF
        +++P   EIGGP GPEPTRYGDWER GR  DF
Subjt:  ESSPNQHEIGGPKGPEPTRYGDWERNGRCYDF

Arabidopsis top hits

e value

%identity

Alignment

AT5G67490.1 unknown protein

2.9e-07

42.22

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Query:  LSRLFSS--PPTLSALPAVSRLTSNSLCRFVSSSSNQQPSRSVQGVSSEEQREAGKESSPNQH--EIGGPKGPEPTRYGDWERNGRCYDF
        +SR  SS  PP     P  +   +  L R V    N Q +  +Q    EE    G     N+   EIGGP+GPEPTRYGDWE+ GRC DF
Subjt:  LSRLFSS--PPTLSALPAVSRLTSNSLCRFVSSSSNQQPSRSVQGVSSEEQREAGKESSPNQH--EIGGPKGPEPTRYGDWERNGRCYDF

Sequences

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CDS sequence

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ATGTCGAGCAATCTCAGCCGCCTGTTCTCGTCGCCGCCGACCCTCTCAGCCCTACCGGCGGTGAGTCGCCTAACTTCCAACTCGTTGTGCCGATTCGTTAGCTCCTCGTC
CAATCAACAGCCTTCTCGATCGGTGCAAGGTGTGTCTAGCGAGGAACAACGAGAGGCTGGGAAAGAAAGTTCGCCTAATCAACACGAGATCGGTGGACCAAAAGGCCCCG
AGCCCACCCGCTACGGCGATTGGGAACGAAATGGTCGGTGCTACGATTTTTGA

mRNA sequence

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Protein sequence

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MSSNLSRLFSSPPTLSALPAVSRLTSNSLCRFVSSSSNQQPSRSVQGVSSEEQREAGKESSPNQHEIGGPKGPEPTRYGDWERNGRCYDF

PI0006017 (gene) of Melon (PI 482460) v1 genome