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PI0006047 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006047
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr03:15221877..15222687
RNA-Seq ExpressionPI0006047
SyntenyPI0006047
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032344.1 uncharacterized protein E6C27_scaffold219G002060 [Cucumis melo var. makuwa]1.1e-7074.07Show/hide
Query:  GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDASVQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNC
        GQSVNEYLAVLQPIWTQL+QAKIS DHLRLIKVLMGL PEYES++AALLH +PLPSLDA++QEILFEEKRLGI  +K S+V LAST+ P GA   FCKNC
Subjt:  GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDASVQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNC

Query:  KLSGHKYIECPKIECRYCHKHGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLASSSSALVVT
        KL+GHK+I+CPKIECRYCHK GHIL+NCP +PPRP SY+T+++NFTK   SSV AAT  +   L  QISDLQSLLNQL++SSSSAL V+
Subjt:  KLSGHKYIECPKIECRYCHKHGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLASSSSALVVT

KAA0046400.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.5e-6972.63Show/hide
Query:  GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDASVQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNC
        GQSVNEYLAVLQPIWTQL+QA IS DHLRLIKVLMGL PEYES++AALLH +PLPSLDA+++EILFEE+RLGI  +K S+V LAST+ P GA I FCKNC
Subjt:  GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDASVQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNC

Query:  KLSGHKYIECPKIECRYCHKHGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLASSSSALVVTP
        KL+GHK+I CPKIECRYCHK GHILDNCP +PPRP +Y+TK++NFTK + SS A A  + T P   QISDLQSLLN L++SSSSAL V+P
Subjt:  KLSGHKYIECPKIECRYCHKHGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLASSSSALVVTP

KAA0063009.1 Integrase, catalytic core [Cucumis melo var. makuwa]9.1e-7073.54Show/hide
Query:  GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDASVQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNC
        GQSVNEYLAVLQPIWTQL+QAKIS DHLRLIKVLMGL PEYES++AALLH +PLPSLDA++QEILFEEKRLGI  +K S+V LAST+ P GA   FCKNC
Subjt:  GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDASVQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNC

Query:  KLSGHKYIECPKIECRYCHKHGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLASSSSALVVT
        KL+GHK+I+CPKIECRYCHK GHILDNCP +PPRP SY+T+++NFTK    SV AAT  +      QISDLQSLLNQL++SSSSAL V+
Subjt:  KLSGHKYIECPKIECRYCHKHGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLASSSSALVVT

TYK21374.1 Zinc finger, CCHC-type [Cucumis melo var. makuwa]1.9e-7272.06Show/hide
Query:  GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDASVQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNC
        GQSVNEYLAVLQPIWTQL+QA IS DHLRLIKVLMGL PEYES++AALLH +PLPSLDA++QEILFEEKRLGI  +K S+V LAST+ P GA   FCKNC
Subjt:  GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDASVQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNC

Query:  KLSGHKYIECPKIECRYCHKHGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLASSSSALVVTPVLQNPYPQFT
        KL+GHK+I+CPKIECRYCHK GHILDNCP +PPRP SY+T ++NFTK   SSV AAT  +       ISDLQSLLNQL++SSSSAL V+ VL N Y  F 
Subjt:  KLSGHKYIECPKIECRYCHKHGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLASSSSALVVTPVLQNPYPQFT

Query:  LLMA
        LLMA
Subjt:  LLMA

XP_008441928.1 PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]1.1e-7074.07Show/hide
Query:  GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDASVQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNC
        GQSVNEYLAVLQPIWTQL+QAKIS DHLRLIKVLMGL PEYES++AALLH +PLPSLDA++QEILFEEKRLGI  +K S+V LAST+ P GA   FCKNC
Subjt:  GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDASVQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNC

Query:  KLSGHKYIECPKIECRYCHKHGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLASSSSALVVT
        KL+GHK+I+CPKIECRYCHK GHIL+NCP +PPRP SY+T+++NFTK   SSV AAT  +   L  QISDLQSLLNQL++SSSSAL V+
Subjt:  KLSGHKYIECPKIECRYCHKHGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLASSSSALVVT

TrEMBL top hitse value%identityAlignment
A0A1S3B566 uncharacterized protein LOC1034859235.2e-7174.07Show/hide
Query:  GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDASVQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNC
        GQSVNEYLAVLQPIWTQL+QAKIS DHLRLIKVLMGL PEYES++AALLH +PLPSLDA++QEILFEEKRLGI  +K S+V LAST+ P GA   FCKNC
Subjt:  GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDASVQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNC

Query:  KLSGHKYIECPKIECRYCHKHGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLASSSSALVVT
        KL+GHK+I+CPKIECRYCHK GHIL+NCP +PPRP SY+T+++NFTK   SSV AAT  +   L  QISDLQSLLNQL++SSSSAL V+
Subjt:  KLSGHKYIECPKIECRYCHKHGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLASSSSALVVT

A0A5A7SMD6 Uncharacterized protein5.2e-7174.07Show/hide
Query:  GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDASVQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNC
        GQSVNEYLAVLQPIWTQL+QAKIS DHLRLIKVLMGL PEYES++AALLH +PLPSLDA++QEILFEEKRLGI  +K S+V LAST+ P GA   FCKNC
Subjt:  GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDASVQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNC

Query:  KLSGHKYIECPKIECRYCHKHGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLASSSSALVVT
        KL+GHK+I+CPKIECRYCHK GHIL+NCP +PPRP SY+T+++NFTK   SSV AAT  +   L  QISDLQSLLNQL++SSSSAL V+
Subjt:  KLSGHKYIECPKIECRYCHKHGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLASSSSALVVT

A0A5A7VBM6 Integrase, catalytic core4.4e-7073.54Show/hide
Query:  GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDASVQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNC
        GQSVNEYLAVLQPIWTQL+QAKIS DHLRLIKVLMGL PEYES++AALLH +PLPSLDA++QEILFEEKRLGI  +K S+V LAST+ P GA   FCKNC
Subjt:  GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDASVQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNC

Query:  KLSGHKYIECPKIECRYCHKHGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLASSSSALVVT
        KL+GHK+I+CPKIECRYCHK GHILDNCP +PPRP SY+T+++NFTK    SV AAT  +      QISDLQSLLNQL++SSSSAL V+
Subjt:  KLSGHKYIECPKIECRYCHKHGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLASSSSALVVT

A0A5D3CS71 Retrovirus-related Pol polyprotein from transposon TNT 1-947.5e-7072.63Show/hide
Query:  GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDASVQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNC
        GQSVNEYLAVLQPIWTQL+QA IS DHLRLIKVLMGL PEYES++AALLH +PLPSLDA+++EILFEE+RLGI  +K S+V LAST+ P GA I FCKNC
Subjt:  GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDASVQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNC

Query:  KLSGHKYIECPKIECRYCHKHGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLASSSSALVVTP
        KL+GHK+I CPKIECRYCHK GHILDNCP +PPRP +Y+TK++NFTK + SS A A  + T P   QISDLQSLLN L++SSSSAL V+P
Subjt:  KLSGHKYIECPKIECRYCHKHGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLASSSSALVVTP

A0A5D3DCR3 Zinc finger, CCHC-type9.4e-7372.06Show/hide
Query:  GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDASVQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNC
        GQSVNEYLAVLQPIWTQL+QA IS DHLRLIKVLMGL PEYES++AALLH +PLPSLDA++QEILFEEKRLGI  +K S+V LAST+ P GA   FCKNC
Subjt:  GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDASVQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNC

Query:  KLSGHKYIECPKIECRYCHKHGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLASSSSALVVTPVLQNPYPQFT
        KL+GHK+I+CPKIECRYCHK GHILDNCP +PPRP SY+T ++NFTK   SSV AAT  +       ISDLQSLLNQL++SSSSAL V+ VL N Y  F 
Subjt:  KLSGHKYIECPKIECRYCHKHGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLASSSSALVVTPVLQNPYPQFT

Query:  LLMA
        LLMA
Subjt:  LLMA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCAGTCTGTCAATGAATATTTAGCAGTTCTTCAGCCCATCTGGACCCAGCTTAATCAAGCTAAAATCAGTGCAGATCATCTGCGTCTTATTAAGGTACTCATGGG
GTTATGCCCAGAATATGAATCTATTCAGGCTGCTCTCCTTCACTGCAACCCCCTGCCTTCATTGGATGCATCTGTTCAGGAAATTCTCTTTGAGGAAAAACGACTTGGCA
TCATTCCTACCAAACAATCTGAAGTAGCCCTCGCCAGCACTCATCCACCTCATGGAGCAATACCGTTTTGTAAAAATTGTAAGCTCTCCGGCCATAAATACATAGAGTGT
CCTAAAATAGAGTGCAGGTATTGTCACAAACATGGCCACATTCTGGATAATTGTCCCACTCGTCCACCTCGACCACCGAGTTACACTACAAAATCAAGAAACTTTACCAA
GTTTGATACTTCCTCAGTTGCTGCCGCTACCTCCTCAGATACTCCTCCTCTCAATCTCCAGATAAGTGATCTTCAGAGCTTATTAAATCAGTTACTTGCATCCTCTTCCT
CTGCCCTTGTCGTAACACCAGTACTGCAAAATCCCTACCCTCAATTTACACTGTTGATGGCCAATTGTGTGACCTTGGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCAGTCTGTCAATGAATATTTAGCAGTTCTTCAGCCCATCTGGACCCAGCTTAATCAAGCTAAAATCAGTGCAGATCATCTGCGTCTTATTAAGGTACTCATGGG
GTTATGCCCAGAATATGAATCTATTCAGGCTGCTCTCCTTCACTGCAACCCCCTGCCTTCATTGGATGCATCTGTTCAGGAAATTCTCTTTGAGGAAAAACGACTTGGCA
TCATTCCTACCAAACAATCTGAAGTAGCCCTCGCCAGCACTCATCCACCTCATGGAGCAATACCGTTTTGTAAAAATTGTAAGCTCTCCGGCCATAAATACATAGAGTGT
CCTAAAATAGAGTGCAGGTATTGTCACAAACATGGCCACATTCTGGATAATTGTCCCACTCGTCCACCTCGACCACCGAGTTACACTACAAAATCAAGAAACTTTACCAA
GTTTGATACTTCCTCAGTTGCTGCCGCTACCTCCTCAGATACTCCTCCTCTCAATCTCCAGATAAGTGATCTTCAGAGCTTATTAAATCAGTTACTTGCATCCTCTTCCT
CTGCCCTTGTCGTAACACCAGTACTGCAAAATCCCTACCCTCAATTTACACTGTTGATGGCCAATTGTGTGACCTTGGCTTAA
Protein sequenceShow/hide protein sequence
MGQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDASVQEILFEEKRLGIIPTKQSEVALASTHPPHGAIPFCKNCKLSGHKYIEC
PKIECRYCHKHGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLASSSSALVVTPVLQNPYPQFTLLMANCVTLA