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PI0006063 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006063
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description60S ribosomal protein L39
Genome locationchr01:6274950..6276501
RNA-Seq ExpressionPI0006063
SyntenyPI0006063
Gene Ontology termsGO:0022625 - cytosolic large ribosomal subunit (cellular component)
InterPro domainsIPR023626 - Ribosomal protein L39e domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG1358934.1 putative homogentisate phytyltransferase 1, chloroplastic [Cocos nucifera]1.1e-0751.35Show/hide
Query:  LTDYLWIRSLS-SLISKTIYVSFFLL---PSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
        L   LW R+ S  L +K    SF++    PSHKTFRIKK LAKKMRQ++ I HWI +RTDN IR +    +WR+
Subjt:  LTDYLWIRSLS-SLISKTIYVSFFLL---PSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
KAG7024013.1 60S ribosomal protein L39-1, partial [Cucurbita argyrosperma subsp. argyrosperma]9.0e-0765.31Show/hide
Query:  FFLLPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
        FFL PSHKTF IKK LAKKMRQ++ I HWI LRTDN IR +    +WR+
Subjt:  FFLLPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
PKI64675.1 hypothetical protein CRG98_014891 [Punica granatum]9.0e-0762Show/hide
Query:  SFFLLPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
        S F+ PSHKTFRIKK LAKKMRQ++ I HWI +RTDN IR +    +WR+
Subjt:  SFFLLPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
XP_011033476.1 PREDICTED: 60S ribosomal protein L39-like [Populus euphratica]5.3e-0765.22Show/hide
Query:  LPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
        +PSHKTFRIKK LAKKMRQ++SI HWI +RTDN IR +    +WR+
Subjt:  LPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
XP_022962571.1 uncharacterized protein LOC111462968 [Cucurbita moschata]1.2e-0663.27Show/hide
Query:  FFLLPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
        F  +PSHKTFRIKK LAKKMRQ++ I HWI LRTDN IR +    +WR+
Subjt:  FFLLPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
TrEMBL top hitse value%identityAlignment
A0A0A0LYE1 Uncharacterized protein5.7e-0765.22Show/hide
Query:  LPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
        +PSHKTFRIKK LAKKMRQ++ I HWI LRTDN IR +    +WR+
Subjt:  LPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
A0A1S3BCZ7 60S ribosomal protein L395.7e-0765.22Show/hide
Query:  LPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
        +PSHKTFRIKK LAKKMRQ++ I HWI LRTDN IR +    +WR+
Subjt:  LPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
A0A2I0K803 Uncharacterized protein4.4e-0762Show/hide
Query:  SFFLLPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
        S F+ PSHKTFRIKK LAKKMRQ++ I HWI +RTDN IR +    +WR+
Subjt:  SFFLLPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
A0A6J1C1Z7 60S ribosomal protein L395.7e-0765.22Show/hide
Query:  LPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
        +PSHKTFRIKK LAKKMRQ++ I HWI LRTDN IR +    +WR+
Subjt:  LPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
A0A6J1HZ80 60S ribosomal protein L395.7e-0765.22Show/hide
Query:  LPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
        +PSHKTFRIKK LAKKMRQ++ I HWI LRTDN IR +    +WR+
Subjt:  LPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
SwissProt top hitse value%identityAlignment
P51424 60S ribosomal protein L39-16.5e-0858.7Show/hide
Query:  LPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
        +PSHK+F IKK L KKMRQ++ I HWI LRTDN IR +    +WR+
Subjt:  LPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
P51425 60S ribosomal protein L391.3e-0860.87Show/hide
Query:  LPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
        +PSHKTFRIKK LAKKMRQ++ I +WI +RTDN IR +    +WR+
Subjt:  LPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
P51426 60S ribosomal protein L39-21.3e-0860.87Show/hide
Query:  LPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
        +PSHKTFRIKK LAKKMRQ++ I +WI +RTDN IR +    +WR+
Subjt:  LPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
Q5SMI4 60S ribosomal protein L39-33.8e-0858.7Show/hide
Query:  LPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
        +PSHKTF+IKK LAKKMRQ++ I +WI +RTDN IR +    +WR+
Subjt:  LPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
Q6KAJ8 60S ribosomal protein L39-11.3e-0860.87Show/hide
Query:  LPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
        +PSHKTFRIKK LAKKMRQ++ I +WI +RTDN IR +    +WR+
Subjt:  LPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
Arabidopsis top hitse value%identityAlignment
AT2G25210.1 Ribosomal protein L39 family protein1.8e-0557.89Show/hide
Query:  IKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
        IKK L KKMRQ++ I HWI LRTDN IR +    +WR+
Subjt:  IKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
AT3G02190.1 Ribosomal protein L39 family protein5.1e-0856.52Show/hide
Query:  LPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
        +PSHK+F IKK L KKMRQ++ I +WI LRTDN IR +    +WR+
Subjt:  LPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
AT4G31985.1 Ribosomal protein L39 family protein4.6e-0958.7Show/hide
Query:  LPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK
        +PSHK+F IKK L KKMRQ++ I HWI LRTDN IR +    +WR+
Subjt:  LPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLD--YWRK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTTCTCCTTCAACGACGAAGACCCACAATCCACGACCCTAAAATTCCTTGTAGCTCGAAGTTTCATCTGCACCGTCCAACCTCATGTTGTTCGAAGTCATCTCC
ATCACGATCAGTTGCCATTAACCCCTTCGAATCTTCCTGGGCATGGAGATCTCTAGATCGAACGAACATAAGCTACCATTTGACTGATTATTTATGGATTAGGTCTCTTT
CATCTCTCATCTCCAAAACAATATATGTTTCTTTTTTTCTACTGCCGTCTCACAAGACCTTCAGAATCAAAAAGAGCTTGGCGAAAAAGATGAGACAGGATAAGTCTATT
CTTCACTGGATCCATCTTAGGACCGATAATGTCATTAGAATATCATTGGACTATTGGAGGAAAGTGCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAATTTCTCCTTCAACGACGAAGACCCACAATCCACGACCCTAAAATTCCTTGTAGCTCGAAGTTTCATCTGCACCGTCCAACCTCATGTTGTTCGAAGTCATCTCC
ATCACGATCAGTTGCCATTAACCCCTTCGAATCTTCCTGGGCATGGAGATCTCTAGATCGAACGAACATAAGCTACCATTTGACTGATTATTTATGGATTAGGTCTCTTT
CATCTCTCATCTCCAAAACAATATATGTTTCTTTTTTTCTACTGCCGTCTCACAAGACCTTCAGAATCAAAAAGAGCTTGGCGAAAAAGATGAGACAGGATAAGTCTATT
CTTCACTGGATCCATCTTAGGACCGATAATGTCATTAGAATATCATTGGACTATTGGAGGAAAGTGCTCTAA
Protein sequenceShow/hide protein sequence
MKFLLQRRRPTIHDPKIPCSSKFHLHRPTSCCSKSSPSRSVAINPFESSWAWRSLDRTNISYHLTDYLWIRSLSSLISKTIYVSFFLLPSHKTFRIKKSLAKKMRQDKSI
LHWIHLRTDNVIRISLDYWRKVL