; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0006148 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006148
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr01:14637089..14637862
RNA-Seq ExpressionPI0006148
SyntenyPI0006148
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060725.1 uncharacterized protein E6C27_scaffold72G00120 [Cucumis melo var. makuwa]1.1e-3855.29Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQEM--------------------------------------------
        ME++RPISCCNV+YKCISKILADR+ VWLP FI  NQSAF+ GRSI+DNILLCQE+                                            
Subjt:  MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQEM--------------------------------------------

Query:  --SGLIANLEKSSMCVAGVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRIQS
          SGL ANL KSS+ VAGV  EA + LA SMGF LG LPVRYLG+PLL+GR+RS+DCAPLIQRITS I+S
Subjt:  --SGLIANLEKSSMCVAGVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRIQS

XP_008452126.1 PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]4.4e-3241.98Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQ----------------------------------------------
        +ED+RPISCCNV+YKCISKILADRL VWLP FI  NQSAF++GRSI++NILLCQ                                              
Subjt:  MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQ----------------------------------------------

Query:  ------------------------------------------EMSGLIANLEKSSMCVAGVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCA
                                                  E+SGL AN  KSS+ +AGV+ E  + LA  MGF  G LPVRYLG+PLL+GR+RS+DC 
Subjt:  ------------------------------------------EMSGLIANLEKSSMCVAGVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCA

Query:  PLIQRITSRIQS
        PLIQRITSRI+S
Subjt:  PLIQRITSRIQS

XP_016902060.1 PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo]2.3e-3655.42Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQEMSG--------------------------------LIA-------
        ME++RPISCCNV+YKCISKILADR+ VWLP FI  NQSAF+ GRSI+DNILLCQE+ G                                LIA       
Subjt:  MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQEMSG--------------------------------LIA-------

Query:  ---NLEKSSMCVAGVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRIQS
              KSS+ VAGV  EA + LA SMGF LG LPVRYLG+PLL+GR+RS+DCAPLIQRITS I+S
Subjt:  ---NLEKSSMCVAGVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRIQS

XP_031740402.1 uncharacterized protein LOC116403409 [Cucumis sativus]1.5e-3244.97Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQ----------------------------------------------
        +ED+ PISCC+V+YKCIS+ILADRL VWLP F+ GNQ AF+ GRSI+DNILLCQ                                              
Subjt:  MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQ----------------------------------------------

Query:  -------------------EMSGLIANLEKSSMCVAGVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRIQS
                           E+SGL ANL KS + + GV+    + LA +MGF++G LPVRYLG+PLLS R+RSSDC PLIQRITSRI+S
Subjt:  -------------------EMSGLIANLEKSSMCVAGVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRIQS

XP_031745634.1 uncharacterized protein LOC116406053 [Cucumis sativus]1.8e-3353.02Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQEMSGLIANLEKSSMCVAGVDIE------------------------
        +ED+ PISCC+V+YKCIS+ILADRL VWLP F+ GNQ AF+ GRSI+DNILLCQE+ G          C   VD++                        
Subjt:  MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQEMSGLIANLEKSSMCVAGVDIE------------------------

Query:  -ATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRIQS
          ++ LA +MGF++G LPVRYLG+PLLS R+RSSDC PLIQRITSRI+S
Subjt:  -ATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRIQS

TrEMBL top hitse value%identityAlignment
A0A1S3BSI8 uncharacterized protein LOC1034932252.1e-3241.98Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQ----------------------------------------------
        +ED+RPISCCNV+YKCISKILADRL VWLP FI  NQSAF++GRSI++NILLCQ                                              
Subjt:  MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQ----------------------------------------------

Query:  ------------------------------------------EMSGLIANLEKSSMCVAGVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCA
                                                  E+SGL AN  KSS+ +AGV+ E  + LA  MGF  G LPVRYLG+PLL+GR+RS+DC 
Subjt:  ------------------------------------------EMSGLIANLEKSSMCVAGVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCA

Query:  PLIQRITSRIQS
        PLIQRITSRI+S
Subjt:  PLIQRITSRIQS

A0A1S4E258 uncharacterized protein LOC1034968801.1e-3655.42Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQEMSG--------------------------------LIA-------
        ME++RPISCCNV+YKCISKILADR+ VWLP FI  NQSAF+ GRSI+DNILLCQE+ G                                LIA       
Subjt:  MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQEMSG--------------------------------LIA-------

Query:  ---NLEKSSMCVAGVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRIQS
              KSS+ VAGV  EA + LA SMGF LG LPVRYLG+PLL+GR+RS+DCAPLIQRITS I+S
Subjt:  ---NLEKSSMCVAGVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRIQS

A0A5A7V4C1 Reverse transcriptase domain-containing protein5.3e-3955.29Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQEM--------------------------------------------
        ME++RPISCCNV+YKCISKILADR+ VWLP FI  NQSAF+ GRSI+DNILLCQE+                                            
Subjt:  MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQEM--------------------------------------------

Query:  --SGLIANLEKSSMCVAGVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRIQS
          SGL ANL KSS+ VAGV  EA + LA SMGF LG LPVRYLG+PLL+GR+RS+DCAPLIQRITS I+S
Subjt:  --SGLIANLEKSSMCVAGVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRIQS

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein1.8e-3145.27Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQEM-------SG-----LIANLEKS----------------------
        ME++RPISCCNV+YKCISKILADRL VWLP FIG NQSAF+ GRSI+DNILLCQE+       SG     L  +L+K+                      
Subjt:  MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQEM-------SG-----LIANLEKS----------------------

Query:  ----------------------------------------SMCVA---GVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRIQ
                                                  C A    +  EA + LA SMGF LG LPVRYLG+PLL+GR+RS+DCAPLIQRITSRI+
Subjt:  ----------------------------------------SMCVA---GVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRIQ

Query:  S
        S
Subjt:  S

A0A5D3DSA8 Putative non-LTR retroelement reverse transcriptase3.4e-3046.37Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQEMSGLIANL-------------------------------------
        MED+RPISCCNV+YKCISKILADRL VWLP FI  NQSAF+ GRSI++NILLCQE+ GL+  +                                     
Subjt:  MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQEMSGLIANL-------------------------------------

Query:  ------EKSSM------------CVAGVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRIQS
              EK  +            C A        ++   +   LG LPVRYLG+PLLSGR+RSSDCAPLIQRITSRI+S
Subjt:  ------EKSSM------------CVAGVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRIQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.6e-0647.17Show/hide
Query:  VAGVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRI
        +AGV       + +S  FA G LPVRYLG+PLL+ +M +SD  PL+++I  RI
Subjt:  VAGVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGATTATAGGCCTATTTCGTGTTGTAATGTGGTTTACAAGTGCATTTCTAAGATTTTGGCGGATAGGCTTCATGTGTGGCTTCCTTTTTTTATCGGTGGTAATCA
GTCGGCCTTTGTAGTTGGGAGGAGTATTGTTGATAACATTCTGCTTTGTCAGGAGATGTCGGGGTTAATTGCTAATTTGGAGAAGAGTTCTATGTGTGTGGCAGGGGTTG
ACATTGAGGCTACTACTGTGTTGGCTAATAGTATGGGGTTTGCGCTGGGTACTTTGCCTGTTCGTTACCTGGGTGTTCCCTTACTCTCTGGTCGTATGCGTTCTTCGGAT
TGTGCTCCGCTCATCCAGCGTATTACTAGTCGGATTCAGTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGATTATAGGCCTATTTCGTGTTGTAATGTGGTTTACAAGTGCATTTCTAAGATTTTGGCGGATAGGCTTCATGTGTGGCTTCCTTTTTTTATCGGTGGTAATCA
GTCGGCCTTTGTAGTTGGGAGGAGTATTGTTGATAACATTCTGCTTTGTCAGGAGATGTCGGGGTTAATTGCTAATTTGGAGAAGAGTTCTATGTGTGTGGCAGGGGTTG
ACATTGAGGCTACTACTGTGTTGGCTAATAGTATGGGGTTTGCGCTGGGTACTTTGCCTGTTCGTTACCTGGGTGTTCCCTTACTCTCTGGTCGTATGCGTTCTTCGGAT
TGTGCTCCGCTCATCCAGCGTATTACTAGTCGGATTCAGTCTTAG
Protein sequenceShow/hide protein sequence
MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQEMSGLIANLEKSSMCVAGVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSD
CAPLIQRITSRIQS