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PI0006170 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006170
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr03:9309121..9312147
RNA-Seq ExpressionPI0006170
SyntenyPI0006170
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040414.1 uncharacterized protein E6C27_scaffold35G00340 [Cucumis melo var. makuwa]1.0e-5660.37Show/hide
Query:  HVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPATRKHVDTCPTNLEQDLEDVQLSVGRPSENFDELVQENAEIIIAAKELIEDLGQSFRRELNEIASTVA
        H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA R+HVDT  TNLEQ +EDVQL+VGR SENF+ELVQENAEI   AKE+IED+G++F+ EL E+ASTV 
Subjt:  HVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPATRKHVDTCPTNLEQDLEDVQLSVGRPSENFDELVQENAEIIIAAKELIEDLGQSFRRELNEIASTVA

Query:  --KGF-------------------------CRS-------TSTSGQPTAQSTYAIKVPKLDIYNRTRNATVVENFLFGLECYFDVLGVNDDGARIK-PPT
          K F                         CRS        STS  PT   T  IKVPK D+YN  RNATVV+NFLFGLE YF  LGV DD ARI   PT
Subjt:  --KGF-------------------------CRS-------TSTSGQPTAQSTYAIKVPKLDIYNRTRNATVVENFLFGLECYFDVLGVNDDGARIK-PPT

Query:  YLRDVVQLWWQRKYIER
        +LRD  QLWW+RKY ++
Subjt:  YLRDVVQLWWQRKYIER

KAA0040659.1 uncharacterized protein E6C27_scaffold370G00130 [Cucumis melo var. makuwa]6.6e-5659.91Show/hide
Query:  HVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPATRKHVDTCPTNLEQDLEDVQLSVGRPSENFDELVQENAEIIIAAKELIEDLGQSFRRELNEIASTVA
        H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA R+HVDT  TNLEQ +EDVQL+VGR SE F+ELVQENAEI   AKE+IED+G++F++EL E+ASTV 
Subjt:  HVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPATRKHVDTCPTNLEQDLEDVQLSVGRPSENFDELVQENAEIIIAAKELIEDLGQSFRRELNEIASTVA

Query:  --KGF-------------------------CRS-------TSTSGQPTAQSTYAIKVPKLDIYNRTRNATVVENFLFGLECYFDVLGVNDDGARIK-PPT
          K F                         CRS        STS  PT   T  IKVPK D+YN  RNATVV+NFLFGLE YF  LGV DD ARI   PT
Subjt:  --KGF-------------------------CRS-------TSTSGQPTAQSTYAIKVPKLDIYNRTRNATVVENFLFGLECYFDVLGVNDDGARIK-PPT

Query:  YLRDVVQLWWQRKYIER
        +LRD  QLWW+RKY ++
Subjt:  YLRDVVQLWWQRKYIER

KAA0042140.1 uncharacterized protein E6C27_scaffold67G006290 [Cucumis melo var. makuwa]3.3e-5556.83Show/hide
Query:  LGAFFSQPFRHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPATRKHVDTCPTNLEQDLEDVQLSVGRPSENFDELVQENAEIIIAAKELIEDLGQSFRR
        L +  S    H SP EQVIEGPVTRGRK+QHSPTRRSKSKGP  R+HVDT  TNLE+ +EDVQL+VGR SENF+ELVQENAEI   AKE+IED+G++F++
Subjt:  LGAFFSQPFRHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPATRKHVDTCPTNLEQDLEDVQLSVGRPSENFDELVQENAEIIIAAKELIEDLGQSFRR

Query:  ELNEIASTVA--KGF-------------------------CRS-------TSTSGQPTAQSTYAIKVPKLDIYNRTRNATVVENFLFGLECYFDVLGVND
        EL E+ASTV   K F                         C S        STS  PT   T  IKVPK D+YN  RNATVV+NFLFGLE YF  LGV D
Subjt:  ELNEIASTVA--KGF-------------------------CRS-------TSTSGQPTAQSTYAIKVPKLDIYNRTRNATVVENFLFGLECYFDVLGVND

Query:  DGARIK-PPTYLRDVVQLWWQRKYIER
        D ARI   PT+LRDV QLWW+ KY ++
Subjt:  DGARIK-PPTYLRDVVQLWWQRKYIER

KAA0065760.1 polyprotein [Cucumis melo var. makuwa]3.0e-5659.91Show/hide
Query:  HVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPATRKHVDTCPTNLEQDLEDVQLSVGRPSENFDELVQENAEIIIAAKELIEDLGQSFRRELNEIASTVA
        H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA R+HVDT  TNLEQ +EDVQL+VGR SENF+ELVQENAEI   AKE+IED+G++F+ EL E+ STV 
Subjt:  HVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPATRKHVDTCPTNLEQDLEDVQLSVGRPSENFDELVQENAEIIIAAKELIEDLGQSFRRELNEIASTVA

Query:  --KGF-------------------------CRS-------TSTSGQPTAQSTYAIKVPKLDIYNRTRNATVVENFLFGLECYFDVLGVNDDGARIK-PPT
          K F                         CRS        STS  PT   T  IKVPK D+YN  RNATVV+NFLFGLE YF  LGV DD ARI   PT
Subjt:  --KGF-------------------------CRS-------TSTSGQPTAQSTYAIKVPKLDIYNRTRNATVVENFLFGLECYFDVLGVNDDGARIK-PPT

Query:  YLRDVVQLWWQRKYIER
        +LRD  QLWW+RKY ++
Subjt:  YLRDVVQLWWQRKYIER

TYK18079.1 uncharacterized protein E5676_scaffold306G004150 [Cucumis melo var. makuwa]3.3e-5556.83Show/hide
Query:  LGAFFSQPFRHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPATRKHVDTCPTNLEQDLEDVQLSVGRPSENFDELVQENAEIIIAAKELIEDLGQSFRR
        L +  S    H SP EQVIEGPVTRGRK+QHSPTRRSKSKGP  R+HVDT  TNLE+ +EDVQL+VGR SENF+ELVQENAEI   AKE+IED+G++F++
Subjt:  LGAFFSQPFRHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPATRKHVDTCPTNLEQDLEDVQLSVGRPSENFDELVQENAEIIIAAKELIEDLGQSFRR

Query:  ELNEIASTVA--KGF-------------------------CRS-------TSTSGQPTAQSTYAIKVPKLDIYNRTRNATVVENFLFGLECYFDVLGVND
        EL E+ASTV   K F                         C S        STS  PT   T  IKVPK D+YN  RNATVV+NFLFGLE YF  LGV D
Subjt:  ELNEIASTVA--KGF-------------------------CRS-------TSTSGQPTAQSTYAIKVPKLDIYNRTRNATVVENFLFGLECYFDVLGVND

Query:  DGARIK-PPTYLRDVVQLWWQRKYIER
        D ARI   PT+LRDV QLWW+ KY ++
Subjt:  DGARIK-PPTYLRDVVQLWWQRKYIER

TrEMBL top hitse value%identityAlignment
A0A5A7TAA5 Uncharacterized protein4.9e-5760.37Show/hide
Query:  HVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPATRKHVDTCPTNLEQDLEDVQLSVGRPSENFDELVQENAEIIIAAKELIEDLGQSFRRELNEIASTVA
        H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA R+HVDT  TNLEQ +EDVQL+VGR SENF+ELVQENAEI   AKE+IED+G++F+ EL E+ASTV 
Subjt:  HVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPATRKHVDTCPTNLEQDLEDVQLSVGRPSENFDELVQENAEIIIAAKELIEDLGQSFRRELNEIASTVA

Query:  --KGF-------------------------CRS-------TSTSGQPTAQSTYAIKVPKLDIYNRTRNATVVENFLFGLECYFDVLGVNDDGARIK-PPT
          K F                         CRS        STS  PT   T  IKVPK D+YN  RNATVV+NFLFGLE YF  LGV DD ARI   PT
Subjt:  --KGF-------------------------CRS-------TSTSGQPTAQSTYAIKVPKLDIYNRTRNATVVENFLFGLECYFDVLGVNDDGARIK-PPT

Query:  YLRDVVQLWWQRKYIER
        +LRD  QLWW+RKY ++
Subjt:  YLRDVVQLWWQRKYIER

A0A5A7TFP3 Retrotrans_gag domain-containing protein1.6e-5556.83Show/hide
Query:  LGAFFSQPFRHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPATRKHVDTCPTNLEQDLEDVQLSVGRPSENFDELVQENAEIIIAAKELIEDLGQSFRR
        L +  S    H SP EQVIEGPVTRGRK+QHSPTRRSKSKGP  R+HVDT  TNLE+ +EDVQL+VGR SENF+ELVQENAEI   AKE+IED+G++F++
Subjt:  LGAFFSQPFRHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPATRKHVDTCPTNLEQDLEDVQLSVGRPSENFDELVQENAEIIIAAKELIEDLGQSFRR

Query:  ELNEIASTVA--KGF-------------------------CRS-------TSTSGQPTAQSTYAIKVPKLDIYNRTRNATVVENFLFGLECYFDVLGVND
        EL E+ASTV   K F                         C S        STS  PT   T  IKVPK D+YN  RNATVV+NFLFGLE YF  LGV D
Subjt:  ELNEIASTVA--KGF-------------------------CRS-------TSTSGQPTAQSTYAIKVPKLDIYNRTRNATVVENFLFGLECYFDVLGVND

Query:  DGARIK-PPTYLRDVVQLWWQRKYIER
        D ARI   PT+LRDV QLWW+ KY ++
Subjt:  DGARIK-PPTYLRDVVQLWWQRKYIER

A0A5A7THC0 Reverse transcriptase domain-containing protein3.2e-5659.91Show/hide
Query:  HVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPATRKHVDTCPTNLEQDLEDVQLSVGRPSENFDELVQENAEIIIAAKELIEDLGQSFRRELNEIASTVA
        H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA R+HVDT  TNLEQ +EDVQL+VGR SE F+ELVQENAEI   AKE+IED+G++F++EL E+ASTV 
Subjt:  HVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPATRKHVDTCPTNLEQDLEDVQLSVGRPSENFDELVQENAEIIIAAKELIEDLGQSFRRELNEIASTVA

Query:  --KGF-------------------------CRS-------TSTSGQPTAQSTYAIKVPKLDIYNRTRNATVVENFLFGLECYFDVLGVNDDGARIK-PPT
          K F                         CRS        STS  PT   T  IKVPK D+YN  RNATVV+NFLFGLE YF  LGV DD ARI   PT
Subjt:  --KGF-------------------------CRS-------TSTSGQPTAQSTYAIKVPKLDIYNRTRNATVVENFLFGLECYFDVLGVNDDGARIK-PPT

Query:  YLRDVVQLWWQRKYIER
        +LRD  QLWW+RKY ++
Subjt:  YLRDVVQLWWQRKYIER

A0A5A7VEX8 Polyprotein1.4e-5659.91Show/hide
Query:  HVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPATRKHVDTCPTNLEQDLEDVQLSVGRPSENFDELVQENAEIIIAAKELIEDLGQSFRRELNEIASTVA
        H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA R+HVDT  TNLEQ +EDVQL+VGR SENF+ELVQENAEI   AKE+IED+G++F+ EL E+ STV 
Subjt:  HVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPATRKHVDTCPTNLEQDLEDVQLSVGRPSENFDELVQENAEIIIAAKELIEDLGQSFRRELNEIASTVA

Query:  --KGF-------------------------CRS-------TSTSGQPTAQSTYAIKVPKLDIYNRTRNATVVENFLFGLECYFDVLGVNDDGARIK-PPT
          K F                         CRS        STS  PT   T  IKVPK D+YN  RNATVV+NFLFGLE YF  LGV DD ARI   PT
Subjt:  --KGF-------------------------CRS-------TSTSGQPTAQSTYAIKVPKLDIYNRTRNATVVENFLFGLECYFDVLGVNDDGARIK-PPT

Query:  YLRDVVQLWWQRKYIER
        +LRD  QLWW+RKY ++
Subjt:  YLRDVVQLWWQRKYIER

A0A5D3D3V4 Retrotrans_gag domain-containing protein1.6e-5556.83Show/hide
Query:  LGAFFSQPFRHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPATRKHVDTCPTNLEQDLEDVQLSVGRPSENFDELVQENAEIIIAAKELIEDLGQSFRR
        L +  S    H SP EQVIEGPVTRGRK+QHSPTRRSKSKGP  R+HVDT  TNLE+ +EDVQL+VGR SENF+ELVQENAEI   AKE+IED+G++F++
Subjt:  LGAFFSQPFRHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPATRKHVDTCPTNLEQDLEDVQLSVGRPSENFDELVQENAEIIIAAKELIEDLGQSFRR

Query:  ELNEIASTVA--KGF-------------------------CRS-------TSTSGQPTAQSTYAIKVPKLDIYNRTRNATVVENFLFGLECYFDVLGVND
        EL E+ASTV   K F                         C S        STS  PT   T  IKVPK D+YN  RNATVV+NFLFGLE YF  LGV D
Subjt:  ELNEIASTVA--KGF-------------------------CRS-------TSTSGQPTAQSTYAIKVPKLDIYNRTRNATVVENFLFGLECYFDVLGVND

Query:  DGARIK-PPTYLRDVVQLWWQRKYIER
        D ARI   PT+LRDV QLWW+ KY ++
Subjt:  DGARIK-PPTYLRDVVQLWWQRKYIER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCCTTTTATTTGAAGCATGTAAGGCCCCAAGGTTTCAGACCCTTGTTCAGCGTGCCTTCACCATCTTCCCCTTCCTCTTCCACACCCTCACCAAACCCTAGTAG
CAACAGCCATCGCCGCCGCCCGCCTCAACCCCACCGCTCGCCGCTTCCAGATCTGCGCCGCAGCCGCCGCGCCGCTACCAATCGCGTCGCGCTGCGCCGCTACCAGTCAC
GAACCAGCCGCGCCTGCCGCTACCGGATCCGTCGCGTCGTTTCCAGTCTGCGAACCACCGTGCTGCCGAGTCGCCCATCCTCCGTTCTCCTAGCCAAGCCAAGTGCCTTA
CTTCCTCCTCCTTGTGAGCCATTTAAGCCATTTGGGGCTACCTTGGGAGCGTTTTTCAGCCAGCCTTTCAGGCATGTATCACCCGAGGAGCAGGTCATTGAAGGGCCTGT
TACCCGAGGAAGGAAGGAGCAACATTCTCCAACCCGACGCTCTAAGTCCAAAGGACCAGCGACAAGGAAGCATGTCGACACTTGCCCTACCAACCTAGAGCAAGACTTGG
AGGATGTTCAACTCTCGGTTGGTAGGCCGAGTGAGAACTTCGATGAATTAGTCCAGGAGAATGCAGAGATCATTATTGCTGCCAAGGAACTCATCGAGGATCTTGGACAG
TCATTCAGAAGAGAACTGAATGAGATAGCATCAACCGTAGCTAAAGGCTTTTGTCGAAGCACTTCGACTAGTGGCCAACCCACTGCGCAGAGCACCTATGCCATCAAGGT
GCCTAAACTTGATATCTATAACAGAACAAGAAATGCTACAGTTGTAGAGAACTTTCTCTTCGGCCTAGAATGTTATTTTGATGTCTTAGGTGTGAACGATGATGGAGCCC
GAATTAAGCCCCCAACATACCTAAGGGACGTTGTTCAGTTATGGTGGCAACGCAAGTACATTGAAAGAGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTCCTTTTATTTGAAGCATGTAAGGCCCCAAGGTTTCAGACCCTTGTTCAGCGTGCCTTCACCATCTTCCCCTTCCTCTTCCACACCCTCACCAAACCCTAGTAG
CAACAGCCATCGCCGCCGCCCGCCTCAACCCCACCGCTCGCCGCTTCCAGATCTGCGCCGCAGCCGCCGCGCCGCTACCAATCGCGTCGCGCTGCGCCGCTACCAGTCAC
GAACCAGCCGCGCCTGCCGCTACCGGATCCGTCGCGTCGTTTCCAGTCTGCGAACCACCGTGCTGCCGAGTCGCCCATCCTCCGTTCTCCTAGCCAAGCCAAGTGCCTTA
CTTCCTCCTCCTTGTGAGCCATTTAAGCCATTTGGGGCTACCTTGGGAGCGTTTTTCAGCCAGCCTTTCAGGCATGTATCACCCGAGGAGCAGGTCATTGAAGGGCCTGT
TACCCGAGGAAGGAAGGAGCAACATTCTCCAACCCGACGCTCTAAGTCCAAAGGACCAGCGACAAGGAAGCATGTCGACACTTGCCCTACCAACCTAGAGCAAGACTTGG
AGGATGTTCAACTCTCGGTTGGTAGGCCGAGTGAGAACTTCGATGAATTAGTCCAGGAGAATGCAGAGATCATTATTGCTGCCAAGGAACTCATCGAGGATCTTGGACAG
TCATTCAGAAGAGAACTGAATGAGATAGCATCAACCGTAGCTAAAGGCTTTTGTCGAAGCACTTCGACTAGTGGCCAACCCACTGCGCAGAGCACCTATGCCATCAAGGT
GCCTAAACTTGATATCTATAACAGAACAAGAAATGCTACAGTTGTAGAGAACTTTCTCTTCGGCCTAGAATGTTATTTTGATGTCTTAGGTGTGAACGATGATGGAGCCC
GAATTAAGCCCCCAACATACCTAAGGGACGTTGTTCAGTTATGGTGGCAACGCAAGTACATTGAAAGAGAGTAG
Protein sequenceShow/hide protein sequence
MDSFYLKHVRPQGFRPLFSVPSPSSPSSSTPSPNPSSNSHRRRPPQPHRSPLPDLRRSRRAATNRVALRRYQSRTSRACRYRIRRVVSSLRTTVLPSRPSSVLLAKPSAL
LPPPCEPFKPFGATLGAFFSQPFRHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPATRKHVDTCPTNLEQDLEDVQLSVGRPSENFDELVQENAEIIIAAKELIEDLGQ
SFRRELNEIASTVAKGFCRSTSTSGQPTAQSTYAIKVPKLDIYNRTRNATVVENFLFGLECYFDVLGVNDDGARIKPPTYLRDVVQLWWQRKYIERE