CuGenDBv2

Gene ID	PI0006181
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Genome location	chr12:8111812..8116542
RNA-Seq Expression	PI0006181
Synteny	PI0006181
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]

1.1e-75

78.14

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Query:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN
        M ENSQNFGNRA ELDN LTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+N
Subjt:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN

Query:  QQPTQATSASNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPTQPDHANVSAISLRSGKILQTPPSEEK
        Q+ TQA   S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKLP QPD+ANVSAISLRSGKIL TP ++EK
Subjt:  QQPTQATSASNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPTQPDHANVSAISLRSGKILQTPPSEEK

KAA0032798.1 retrotransposon gag protein [Cucumis melo var. makuwa]

1.3e-74

77.6

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Query:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN
        MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDP GNTYN GWRDNPNLRWGN+N
Subjt:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN

Query:  QQPTQATSASNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPTQPDHANVSAISLRSGKILQTPPSEEK
        Q+ TQA   S+NQG+NLED++ ALATNT+SFQ EMKQQM+QLT  +SK++GKGKLP QPDH NVSAISLRSGKIL TP ++EK
Subjt:  QQPTQATSASNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPTQPDHANVSAISLRSGKILQTPPSEEK

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]

4.3e-75

77.6

Show/hide

Query:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN
        MAENSQ+F NRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+N
Subjt:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN

Query:  QQPTQATSASNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPTQPDHANVSAISLRSGKILQTPPSEEK
        Q+ TQA S S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKL  Q ++ANVSA+SLRSGKIL TP ++EK
Subjt:  QQPTQATSASNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPTQPDHANVSAISLRSGKILQTPPSEEK

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]

2.5e-75

71.71

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Query:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN
        M ENSQ+FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGL+GHPNDKC  ++E+ N++R+YDP  NTYN+GWRDNPNLRWGN+N
Subjt:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN

Query:  QQPTQATSASNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPTQPDHANVSAISLRSGKILQTPPSEEKAERELKATRLHAALGLF
        Q+ TQA S S+NQG+NLED++KAL TNT+SFQ EMKQQM+QLT AISK++GKGKLP QPD+ANVSAISLRSGKIL TP ++EK +   K   L   L +F
Subjt:  QQPTQATSASNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPTQPDHANVSAISLRSGKILQTPPSEEKAERELKATRLHAALGLF

Query:  GRERL
         +E++
Subjt:  GRERL

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]

1.9e-75

78.14

Show/hide

Query:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN
        MAENS++FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGL+GHPNDKCP ++E+ N++R+YDP  NTYN+GWRDN NLRWGN+N
Subjt:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN

Query:  QQPTQATSASNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPTQPDHANVSAISLRSGKILQTPPSEEK
        Q+ TQA S S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT AISK++GKGKLP QPDHANVSAISLRSGKIL TP ++EK
Subjt:  QQPTQATSASNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPTQPDHANVSAISLRSGKILQTPPSEEK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SQH8 Retrotransposon gag protein

6.1e-75

77.6

Show/hide

Query:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN
        MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDP GNTYN GWRDNPNLRWGN+N
Subjt:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN

Query:  QQPTQATSASNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPTQPDHANVSAISLRSGKILQTPPSEEK
        Q+ TQA   S+NQG+NLED++ ALATNT+SFQ EMKQQM+QLT  +SK++GKGKLP QPDH NVSAISLRSGKIL TP ++EK
Subjt:  QQPTQATSASNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPTQPDHANVSAISLRSGKILQTPPSEEK

A0A5A7V0Q7 Retrotransposon gag protein

1.2e-75

71.71

Show/hide

Query:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN
        M ENSQ+FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGL+GHPNDKC  ++E+ N++R+YDP  NTYN+GWRDNPNLRWGN+N
Subjt:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN

Query:  QQPTQATSASNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPTQPDHANVSAISLRSGKILQTPPSEEKAERELKATRLHAALGLF
        Q+ TQA S S+NQG+NLED++KAL TNT+SFQ EMKQQM+QLT AISK++GKGKLP QPD+ANVSAISLRSGKIL TP ++EK +   K   L   L +F
Subjt:  QQPTQATSASNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPTQPDHANVSAISLRSGKILQTPPSEEKAERELKATRLHAALGLF

Query:  GRERL
         +E++
Subjt:  GRERL

A0A5D3CB46 Retrotransposon gag protein

9.4e-76

78.14

Show/hide

Query:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN
        MAENS++FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGL+GHPNDKCP ++E+ N++R+YDP  NTYN+GWRDN NLRWGN+N
Subjt:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN

Query:  QQPTQATSASNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPTQPDHANVSAISLRSGKILQTPPSEEK
        Q+ TQA S S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT AISK++GKGKLP QPDHANVSAISLRSGKIL TP ++EK
Subjt:  QQPTQATSASNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPTQPDHANVSAISLRSGKILQTPPSEEK

A0A5D3CRR8 Retrotransposon gag protein

2.1e-75

77.6

Show/hide

Query:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN
        MAENSQ+F NRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+N
Subjt:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN

Query:  QQPTQATSASNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPTQPDHANVSAISLRSGKILQTPPSEEK
        Q+ TQA S S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKL  Q ++ANVSA+SLRSGKIL TP ++EK
Subjt:  QQPTQATSASNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPTQPDHANVSAISLRSGKILQTPPSEEK

E5GBZ4 Retrotransposon gag protein

5.5e-76

78.14

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Query:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN
        M ENSQNFGNRA ELDN LTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+N
Subjt:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN

Query:  QQPTQATSASNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPTQPDHANVSAISLRSGKILQTPPSEEK
        Q+ TQA   S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKLP QPD+ANVSAISLRSGKIL TP ++EK
Subjt:  QQPTQATSASNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPTQPDHANVSAISLRSGKILQTPPSEEK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCTGAAAATTCACAAAATTTTGGCAACAGAGCATCCGAGCTCGACAATTCATTGACAAAGGAGGTAAGTGAACTTAAATCACAAATGCTTAATATGACTACTCTACT
AACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCCAATGATAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCA
TTAGGAAGTACGATCCCCAAGGAAATACTTACAATGCCGGTTGGAGAGACAATCCAAACCTTAGATGGGGAAATAATAATCAACAACCCACACAAGCAACTTCTGCTTCA
AATAATCAAGGTAGTAATTTGGAGGATTTGGTAAAAGCTCTTGCTACTAATACAATTTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCAATTAACAAATGCAATAAG
CAAGTTAGAAGGCAAAGGTAAGTTGCCAACTCAGCCTGATCATGCAAATGTAAGTGCCATCTCACTTAGAAGTGGTAAAATTCTGCAAACCCCTCCAAGTGAAGAAAAGG
CGGAGAGGGAGCTCAAGGCGACGAGGCTACACGCGGCGCTAGGGCTTTTCGGGAGAGAGAGGCTGCTCGGTGAGAATACACGCAAAGAGGGAATTACCTTGATGCTTAGC
CAAACTTGCGATCGTTACATGCGTTGTTTCGACTTCTATGATCAGACCCTCCAAAGGGATGGTCGCTCTAGGACGACACGTAGGCAGATCATAGAAATCTCACGGTACAA
CCTAATAAAGGAGACCGTAGGATACGTTGACACGCGTCCTTCTCCCACTCACTATGAACACCCCTATTCACCTTGTTATTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

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MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATSAS
NNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPTQPDHANVSAISLRSGKILQTPPSEEKAERELKATRLHAALGLFGRERLLGENTRKEGITLMLS
QTCDRYMRCFDFYDQTLQRDGRSRTTRRQIIEISRYNLIKETVGYVDTRPSPTHYEHPYSPCY

PI0006181 (gene) of Melon (PI 482460) v1 genome