CuGenDBv2

Gene ID	PI0006190
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr12:15533912..15534388
RNA-Seq Expression	PI0006190
Synteny	PI0006190
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

3.8e-52

76.58

Show/hide

Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMMVQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMN
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E  SVREHVL MMV FNVAE NG VIDE SQVSF LESL +SFLQFRSN VMN
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMMVQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

3.8e-52

76.58

Show/hide

Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMMVQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMN
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E  SVREHVL MMV FNVAE NG VIDE SQVSF LESL +SFLQFRSN VMN
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMMVQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]

3.8e-52

76.58

Show/hide

Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMMVQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMN
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E  SVREHVL MMV FNVAE NG VIDE SQVSF LESL +SFLQFRSN VMN
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMMVQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

3.8e-52

76.58

Show/hide

Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMMVQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMN
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E  SVREHVL MMV FNVAE NG VIDE SQVSF LESL +SFLQFRSN VMN
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMMVQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

3.8e-52

76.58

Show/hide

Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMMVQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMN
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E  SVREHVL MMV FNVAE NG VIDE SQVSF LESL +SFLQFRSN VMN
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMMVQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

1.8e-52

76.58

Show/hide

Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMMVQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMN
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E  SVREHVL MMV FNVAE NG VIDE SQVSF LESL +SFLQFRSN VMN
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMMVQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

A0A5A7TU93 Gag/pol protein

1.8e-52

76.58

Show/hide

Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMMVQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMN
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E  SVREHVL MMV FNVAE NG VIDE SQVSF LESL +SFLQFRSN VMN
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMMVQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

A0A5A7TWB9 Gag/pol protein

1.8e-52

76.58

Show/hide

Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMMVQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMN
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E  SVREHVL MMV FNVAE NG VIDE SQVSF LESL +SFLQFRSN VMN
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMMVQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

A0A5A7V4M1 Gag/pol protein

1.8e-52

76.58

Show/hide

Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMMVQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMN
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E  SVREHVL MMV FNVAE NG VIDE SQVSF LESL +SFLQFRSN VMN
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMMVQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

A0A5D3CPJ6 Gag/pol protein

1.8e-52

76.58

Show/hide

Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMMVQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMN
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E  SVREHVL MMV FNVAE NG VIDE SQVSF LESL +SFLQFRSN VMN
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMMVQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACTGTCCATTCAAATCCGACACGAGGC
TATTAAATACGTTTATAATGCCCGTATGAAGGAACACCAATCTGTTAGAGAACATGTTCTAGGCATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGTGGTCATTG
ACGAGCAAAGTCAGGTATCCTTTACCTTAGAATCTCTTTTGAAGAGCTTCCTTCAATTCCGTAGCAATGTGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTT
AACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAA
GTCTGCACCTTCATCTTCTGGGACTAAGAAAATCTAG

mRNA sequence

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Protein sequence

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MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMMVQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMNKIEYTMTTLL
NELQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGTKKI

PI0006190 (gene) of Melon (PI 482460) v1 genome