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PI0006220 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006220
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr11:7585858..7586721
RNA-Seq ExpressionPI0006220
SyntenyPI0006220
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046468.1 hypothetical protein E6C27_scaffold543G00470 [Cucumis melo var. makuwa]4.5e-1445.19Show/hide
Query:  KRLIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQEEWEDDDYGSHY---GRRQRNDEGMDRNGVVALPNQMTAM
        KRL+KAC H+ I KC+L+E FY  L+++ + + +  F  G+L+ SYNQ K  LD++  N +E  DD   S       R R DEGMDRN +V L  Q+T M
Subjt:  KRLIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQEEWEDDDYGSHY---GRRQRNDEGMDRNGVVALPNQMTAM

Query:  NNLL
        N LL
Subjt:  NNLL

KAA0048713.1 hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa]1.0e-1847.41Show/hide
Query:  RYKRLIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQEEWEDDDYGSH------YGRRQRNDEGMDRNGVVALPN
        R+KR+IK CPH+ IP+C+L+E FY GL+K    SAN  F  GML+ SYNQIK  LD+++ N +EW D+ +GS        G R R ++G+D + +VAL  
Subjt:  RYKRLIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQEEWEDDDYGSH------YGRRQRNDEGMDRNGVVALPN

Query:  QMTAMNNLLQSMVHTQ
        Q+  M N+LQSM   Q
Subjt:  QMTAMNNLLQSMVHTQ

KAA0061983.1 uncharacterized protein E6C27_scaffold89G002850 [Cucumis melo var. makuwa]1.1e-1231.25Show/hide
Query:  IAHDVTKPIREYASASLYDFNIGITYSEFRDNTECQMK--------------------------------------------------------LGRYKR
        +AH++ +PIR YA  SLY+FN GI Y EF +N   + K                                                           +KR
Subjt:  IAHDVTKPIREYASASLYDFNIGITYSEFRDNTECQMK--------------------------------------------------------LGRYKR

Query:  LIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQEE
        ++KAC H+ I K +L+E FY GL+K+ + SA++ F  G+L+ SYNQIKA LDS++ N ++
Subjt:  LIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQEE

KGN44484.1 hypothetical protein Csa_015918 [Cucumis sativus]4.1e-2351.24Show/hide
Query:  RDNTECQMKLGRYKRLIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQEEWEDDDYGSHYGRRQRNDEGMDRNGV
        RD         R+KRL+KACP + IP+C+ +E FY GL+K+     N  F  GML+ SYNQIKATLDS+S N +EW+D  +GS +  R R  EG+D++ V
Subjt:  RDNTECQMKLGRYKRLIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQEEWEDDDYGSHYGRRQRNDEGMDRNGV

Query:  VALPNQMTAMNNLLQSMVHTQ
        V L  QM AMNNLLQSM  +Q
Subjt:  VALPNQMTAMNNLLQSMVHTQ

KGN53801.1 hypothetical protein Csa_014772 [Cucumis sativus]5.9e-1441.07Show/hide
Query:  LIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQEEWEDDDYGSHY----GRRQ--RNDEGMDRNGVVALPNQMTA
        ++K C H++I  C++IE FY GL+++ +   +A F  GML+ S N IK TLD++  N +EW D+++GSH      RR+  R ++G + N ++ L +Q+T 
Subjt:  LIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQEEWEDDDYGSHY----GRRQ--RNDEGMDRNGVVALPNQMTA

Query:  MNNLLQSMVHTQ
        MN LLQSM  +Q
Subjt:  MNNLLQSMVHTQ

TrEMBL top hitse value%identityAlignment
A0A0A0K6F9 Uncharacterized protein2.0e-2351.24Show/hide
Query:  RDNTECQMKLGRYKRLIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQEEWEDDDYGSHYGRRQRNDEGMDRNGV
        RD         R+KRL+KACP + IP+C+ +E FY GL+K+     N  F  GML+ SYNQIKATLDS+S N +EW+D  +GS +  R R  EG+D++ V
Subjt:  RDNTECQMKLGRYKRLIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQEEWEDDDYGSHYGRRQRNDEGMDRNGV

Query:  VALPNQMTAMNNLLQSMVHTQ
        V L  QM AMNNLLQSM  +Q
Subjt:  VALPNQMTAMNNLLQSMVHTQ

A0A0A0L0Y4 Uncharacterized protein2.9e-1441.07Show/hide
Query:  LIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQEEWEDDDYGSHY----GRRQ--RNDEGMDRNGVVALPNQMTA
        ++K C H++I  C++IE FY GL+++ +   +A F  GML+ S N IK TLD++  N +EW D+++GSH      RR+  R ++G + N ++ L +Q+T 
Subjt:  LIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQEEWEDDDYGSHY----GRRQ--RNDEGMDRNGVVALPNQMTA

Query:  MNNLLQSMVHTQ
        MN LLQSM  +Q
Subjt:  MNNLLQSMVHTQ

A0A5A7TUE1 Uncharacterized protein2.2e-1445.19Show/hide
Query:  KRLIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQEEWEDDDYGSHY---GRRQRNDEGMDRNGVVALPNQMTAM
        KRL+KAC H+ I KC+L+E FY  L+++ + + +  F  G+L+ SYNQ K  LD++  N +E  DD   S       R R DEGMDRN +V L  Q+T M
Subjt:  KRLIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQEEWEDDDYGSHY---GRRQRNDEGMDRNGVVALPNQMTAM

Query:  NNLL
        N LL
Subjt:  NNLL

A0A5A7V1F3 Retrotrans_gag domain-containing protein5.4e-1331.25Show/hide
Query:  IAHDVTKPIREYASASLYDFNIGITYSEFRDNTECQMK--------------------------------------------------------LGRYKR
        +AH++ +PIR YA  SLY+FN GI Y EF +N   + K                                                           +KR
Subjt:  IAHDVTKPIREYASASLYDFNIGITYSEFRDNTECQMK--------------------------------------------------------LGRYKR

Query:  LIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQEE
        ++KAC H+ I K +L+E FY GL+K+ + SA++ F  G+L+ SYNQIKA LDS++ N ++
Subjt:  LIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQEE

A0A5D3CC26 Uncharacterized protein5.0e-1947.41Show/hide
Query:  RYKRLIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQEEWEDDDYGSH------YGRRQRNDEGMDRNGVVALPN
        R+KR+IK CPH+ IP+C+L+E FY GL+K    SAN  F  GML+ SYNQIK  LD+++ N +EW D+ +GS        G R R ++G+D + +VAL  
Subjt:  RYKRLIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQEEWEDDDYGSH------YGRRQRNDEGMDRNGVVALPN

Query:  QMTAMNNLLQSMVHTQ
        Q+  M N+LQSM   Q
Subjt:  QMTAMNNLLQSMVHTQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGCTCAACAATAACAACCAAGTTGTCCCTTTGAACGACACTACACAACAAGAGCATCCCATAATTATAGCCCATGACGTAACTAAGCCAATTCGAGAATACGCATC
GGCTAGTCTGTACGATTTCAATATTGGTATCACCTACTCTGAGTTTAGAGACAACACCGAATGTCAAATGAAGCTGGGGCGTTATAAAAGATTGATAAAGGCTTGCCCGC
ATAACAGCATACCAAAATGTATTTTGATTGAAGATTTCTATGGCGGGCTGAACAAAGAAATGAAACATAGTGCGAATGCTGCGTTTCAAAGAGGGATGCTTAAGCAATCT
TATAACCAGATTAAAGCTACCTTGGATTCATTATCCAAGAATCAAGAAGAATGGGAAGATGACGATTATGGTTCTCATTACGGAAGAAGACAGAGGAATGATGAGGGAAT
GGATAGAAATGGAGTAGTGGCCTTACCAAACCAAATGACTGCGATGAACAATCTCTTGCAATCAATGGTTCATACACAAAGCAGAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGACGCTCAACAATAACAACCAAGTTGTCCCTTTGAACGACACTACACAACAAGAGCATCCCATAATTATAGCCCATGACGTAACTAAGCCAATTCGAGAATACGCATC
GGCTAGTCTGTACGATTTCAATATTGGTATCACCTACTCTGAGTTTAGAGACAACACCGAATGTCAAATGAAGCTGGGGCGTTATAAAAGATTGATAAAGGCTTGCCCGC
ATAACAGCATACCAAAATGTATTTTGATTGAAGATTTCTATGGCGGGCTGAACAAAGAAATGAAACATAGTGCGAATGCTGCGTTTCAAAGAGGGATGCTTAAGCAATCT
TATAACCAGATTAAAGCTACCTTGGATTCATTATCCAAGAATCAAGAAGAATGGGAAGATGACGATTATGGTTCTCATTACGGAAGAAGACAGAGGAATGATGAGGGAAT
GGATAGAAATGGAGTAGTGGCCTTACCAAACCAAATGACTGCGATGAACAATCTCTTGCAATCAATGGTTCATACACAAAGCAGAAATTGA
Protein sequenceShow/hide protein sequence
MTLNNNNQVVPLNDTTQQEHPIIIAHDVTKPIREYASASLYDFNIGITYSEFRDNTECQMKLGRYKRLIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQS
YNQIKATLDSLSKNQEEWEDDDYGSHYGRRQRNDEGMDRNGVVALPNQMTAMNNLLQSMVHTQSRN