CuGenDBv2

Gene ID	PI0006222
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr09:6035737..6036261
RNA-Seq Expression	PI0006222
Synteny	PI0006222
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040193.1 gag/pol protein [Cucumis melo var. makuwa]

5.0e-58

71.52

Show/hide

Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSSIRNASQTVRDAHDRWTKANEKARVYILACMCDVLSKKHESMVTACQIMDSLQE
        MSSSIIALLK ++LTG NY TWKS LNMILVI DLR +LME+CPP   +NASQ+V+DA+D WTK N+KAR+YIL  M D+LSKKHE MVTA QIMDS++E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSSIRNASQTVRDAHDRWTKANEKARVYILACMCDVLSKKHESMVTACQIMDSLQE

Query:  MFGKSSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGMVIDEQSQVSFILESLPRA
        MFG+ SIQI+ EAIKYVYN  MKEDQSVREHVLDM+V FN+AEMN +V DE+SQVS+IL+SL ++
Subjt:  MFGKSSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGMVIDEQSQVSFILESLPRA

KAA0063887.1 gag/pol protein [Cucumis melo var. makuwa]

5.4e-60

73.94

Show/hide

Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSSIRNASQTVRDAHDRWTKANEKARVYILACMCDVLSKKHESMVTACQIMDSLQE
        MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP   +NASQ+V+DA+D WTKAN+KA +Y+LA + D+LSKKHE MVTA QIMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSSIRNASQTVRDAHDRWTKANEKARVYILACMCDVLSKKHESMVTACQIMDSLQE

Query:  MFGKSSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGMVIDEQSQVSFILESLPRA
        MFG+ SIQI+ EAIKYVYNARMKE QSVREHVL M+V FNVAEMN  + DE+SQVS+IL+SL ++
Subjt:  MFGKSSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGMVIDEQSQVSFILESLPRA

TYK15919.1 gag/pol protein [Cucumis melo var. makuwa]

5.4e-60

73.94

Show/hide

Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSSIRNASQTVRDAHDRWTKANEKARVYILACMCDVLSKKHESMVTACQIMDSLQE
        MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP   +NASQ+V+DA+D WTKAN+KA +Y+LA + D+LSKKHE MVTA QIMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSSIRNASQTVRDAHDRWTKANEKARVYILACMCDVLSKKHESMVTACQIMDSLQE

Query:  MFGKSSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGMVIDEQSQVSFILESLPRA
        MFG+ SIQI+ EAIKYVYNARMKE QSVREHVL M+V FNVAEMN  + DE+SQVS+IL+SL ++
Subjt:  MFGKSSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGMVIDEQSQVSFILESLPRA

XP_022158197.1 uncharacterized protein LOC111024734 [Momordica charantia]

3.6e-56

68.9

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Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSSIRNASQTVRDAHDRWTKANEKARVYILACMCDVLSKKHESMVTACQIMDSLQE
        MS+SIIALL  +KL G+NY  WKSNLN ILVIDDLRFVL E+CP + + NA+  VR+A+DRW K+N+KA+VYILA + DVL+KKHE  VT  +IMDSLQ 
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSSIRNASQTVRDAHDRWTKANEKARVYILACMCDVLSKKHESMVTACQIMDSLQE

Query:  MFGKSSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGMVIDEQSQVSFILESLPR
        MFG+ S+Q RHEA+K+VYN+RMKE  SVREHVL++MV FNVAE NG+VIDEQSQ SFILESLP+
Subjt:  MFGKSSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGMVIDEQSQVSFILESLPR

XP_022158791.1 uncharacterized protein LOC111025258 [Momordica charantia]

1.6e-56

69.46

Show/hide

Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSSIRNASQTVRDAHDRWTKANEKARVYILACMCDVLSKKHESMVTACQIMDSLQE
        MS+S I LL ++KL GDNY  WKSNLN ILVIDDLRFVL EECPP+   N++QTVRDAHDRW KANEKARVYILA + DVLSKKHE + TA +IMDSLQ 
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSSIRNASQTVRDAHDRWTKANEKARVYILACMCDVLSKKHESMVTACQIMDSLQE

Query:  MFGKSSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGMVIDEQSQVSFILESLPRASF
        +FG+ S  I H+AIKYVYN RMKE  SVREHVL+MMV FNVAE+N  V++E SQV FI++SLP++ F
Subjt:  MFGKSSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGMVIDEQSQVSFILESLPRASF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7VA67 Gag/pol protein

2.6e-60

73.94

Show/hide

Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSSIRNASQTVRDAHDRWTKANEKARVYILACMCDVLSKKHESMVTACQIMDSLQE
        MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP   +NASQ+V+DA+D WTKAN+KA +Y+LA + D+LSKKHE MVTA QIMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSSIRNASQTVRDAHDRWTKANEKARVYILACMCDVLSKKHESMVTACQIMDSLQE

Query:  MFGKSSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGMVIDEQSQVSFILESLPRA
        MFG+ SIQI+ EAIKYVYNARMKE QSVREHVL M+V FNVAEMN  + DE+SQVS+IL+SL ++
Subjt:  MFGKSSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGMVIDEQSQVSFILESLPRA

A0A5D3D0D9 Gag/pol protein

2.6e-60

73.94

Show/hide

Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSSIRNASQTVRDAHDRWTKANEKARVYILACMCDVLSKKHESMVTACQIMDSLQE
        MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP   +NASQ+V+DA+D WTKAN+KA +Y+LA + D+LSKKHE MVTA QIMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSSIRNASQTVRDAHDRWTKANEKARVYILACMCDVLSKKHESMVTACQIMDSLQE

Query:  MFGKSSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGMVIDEQSQVSFILESLPRA
        MFG+ SIQI+ EAIKYVYNARMKE QSVREHVL M+V FNVAEMN  + DE+SQVS+IL+SL ++
Subjt:  MFGKSSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGMVIDEQSQVSFILESLPRA

A0A5D3DQJ2 Gag/pol protein

2.4e-58

71.52

Show/hide

Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSSIRNASQTVRDAHDRWTKANEKARVYILACMCDVLSKKHESMVTACQIMDSLQE
        MSSSIIALLK ++LTG NY TWKS LNMILVI DLR +LME+CPP   +NASQ+V+DA+D WTK N+KAR+YIL  M D+LSKKHE MVTA QIMDS++E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSSIRNASQTVRDAHDRWTKANEKARVYILACMCDVLSKKHESMVTACQIMDSLQE

Query:  MFGKSSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGMVIDEQSQVSFILESLPRA
        MFG+ SIQI+ EAIKYVYN  MKEDQSVREHVLDM+V FN+AEMN +V DE+SQVS+IL+SL ++
Subjt:  MFGKSSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGMVIDEQSQVSFILESLPRA

A0A6J1DWL0 uncharacterized protein LOC111024734

1.8e-56

68.9

Show/hide

Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSSIRNASQTVRDAHDRWTKANEKARVYILACMCDVLSKKHESMVTACQIMDSLQE
        MS+SIIALL  +KL G+NY  WKSNLN ILVIDDLRFVL E+CP + + NA+  VR+A+DRW K+N+KA+VYILA + DVL+KKHE  VT  +IMDSLQ 
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSSIRNASQTVRDAHDRWTKANEKARVYILACMCDVLSKKHESMVTACQIMDSLQE

Query:  MFGKSSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGMVIDEQSQVSFILESLPR
        MFG+ S+Q RHEA+K+VYN+RMKE  SVREHVL++MV FNVAE NG+VIDEQSQ SFILESLP+
Subjt:  MFGKSSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGMVIDEQSQVSFILESLPR

A0A6J1E205 uncharacterized protein LOC111025258

7.9e-57

69.46

Show/hide

Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSSIRNASQTVRDAHDRWTKANEKARVYILACMCDVLSKKHESMVTACQIMDSLQE
        MS+S I LL ++KL GDNY  WKSNLN ILVIDDLRFVL EECPP+   N++QTVRDAHDRW KANEKARVYILA + DVLSKKHE + TA +IMDSLQ 
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSSIRNASQTVRDAHDRWTKANEKARVYILACMCDVLSKKHESMVTACQIMDSLQE

Query:  MFGKSSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGMVIDEQSQVSFILESLPRASF
        +FG+ S  I H+AIKYVYN RMKE  SVREHVL+MMV FNVAE+N  V++E SQV FI++SLP++ F
Subjt:  MFGKSSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGMVIDEQSQVSFILESLPRASF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTT
CGTCTTAATGGAGGAATGTCCTCCTTCCTCTATTCGAAATGCATCCCAGACCGTCAGGGATGCACATGACCGCTGGACAAAGGCCAATGAAAAGGCTCGAGTCTACATCT
TGGCCTGTATGTGTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCATGTCAGATTATGGACTCCCTCCAAGAGATGTTTGGAAAATCGTCCATTCAAATCCGG
CACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGACCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAATGAACGGGAT
GGTCATTGACGAGCAAAGTCAAGTATCCTTTATCTTAGAATCTCTTCCAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGA

mRNA sequence

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Protein sequence

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MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSSIRNASQTVRDAHDRWTKANEKARVYILACMCDVLSKKHESMVTACQIMDSLQEMFGKSSIQIR
HEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGMVIDEQSQVSFILESLPRASFNSVAMRL

PI0006222 (gene) of Melon (PI 482460) v1 genome