; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0006232 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006232
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr12:17519786..17520628
RNA-Seq ExpressionPI0006232
SyntenyPI0006232
Gene Ontology termsNA
InterPro domainsIPR025314 - Domain of unknown function DUF4219


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045094.1 putative mitochondrial protein [Cucumis melo var. makuwa]4.1e-7059.77Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKLTHSGNVTSSDTTKNADVDLSNTTIQETTTEDIKYIERLEDWDSKNHQIITW
        MEK DIARPISTILDGSNYITWA+QMRSF IGRKLWRIVTGDITKP+K T     TS + T++ D + S+    ETT ED KYIERLEDWDSKNHQIITW
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKLTHSGNVTSSDTTKNADVDLSNTTIQETTTEDIKYIERLEDWDSKNHQIITW

Query:  --------------------------------------------------LDQAKISLGHIHLIKVLMGLCPEYESVRAALYESVRAALLHCNPLPSLDV
                                                          LDQAKIS  HI LIKVLMGL PE        YESVRAALLH N LPSLD 
Subjt:  --------------------------------------------------LDQAKISLGHIHLIKVLMGLCPEYESVRAALYESVRAALLHCNPLPSLDV

Query:  AVQEILFEEKRLGIVSFLPSDTALATTHSRPTNKFTFCKNCKLQGHKFANCPTIECRYSHK
        AVQEILFE+KRLG+VS LP D ALATTH R  N+ +FCKNCKL  HKFANCPTIECRY HK
Subjt:  AVQEILFEEKRLGIVSFLPSDTALATTHSRPTNKFTFCKNCKLQGHKFANCPTIECRYSHK

KAA0047794.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.4e-7056.07Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKLTHSGNVTSSDTTKNADVDLSNTTIQETTTEDIKYIERLEDWDSKNHQIITW
        MEK+ +ARPISTILDG+NYITWAHQMRSF IGRKLWRIVTGDITKPVK T     TS + T++ D + S+  + E T EDI+YIERLEDWDSKNHQIITW
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKLTHSGNVTSSDTTKNADVDLSNTTIQETTTEDIKYIERLEDWDSKNHQIITW

Query:  ---------------------------------------------------------------------LDQAKISLGHIHLIKVLMGLCPEYESVRAAL
                                                                             LDQAKIS  HI LIKVLMGL  E        
Subjt:  ---------------------------------------------------------------------LDQAKISLGHIHLIKVLMGLCPEYESVRAAL

Query:  YESVRAALLHCNPLPSLDVAVQEILFEEKRLGIVSFLPSDTALATTHSRPTNKFTFCKNCKLQGHKFANCPTIECRYSHK
        YESVRAALLH NPLPSLD AVQEILFEEKRLGIVS LPSD ALATTH R  N+ +FCKNCKL GHKFANCPTIECRY +K
Subjt:  YESVRAALLHCNPLPSLDVAVQEILFEEKRLGIVSFLPSDTALATTHSRPTNKFTFCKNCKLQGHKFANCPTIECRYSHK

KAA0053979.1 Integrase, catalytic core [Cucumis melo var. makuwa]1.2e-6453.57Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKLTHSGNVTSSDTTKNADVDLSNTTIQETTTEDIKYIERLEDWDSKNHQIITW
        MEKSDIARPIST LDGSNYITWAHQMRSF IGRKLW IVTGDITKPVK       T  ++ ++ D+        +TT EDIKYIERLEDWD KNHQIITW
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKLTHSGNVTSSDTTKNADVDLSNTTIQETTTEDIKYIERLEDWDSKNHQIITW

Query:  ---------------------------------------------------------------------LDQAKISLGHIHLIKVLMGLCPEYESVRAAL
                                                                             L+QAKISL HIHLIKVLMGL PE        
Subjt:  ---------------------------------------------------------------------LDQAKISLGHIHLIKVLMGLCPEYESVRAAL

Query:  YESVRAALLHCNPLPSLDVAVQEILFEEKRLGIVSFLPSDTALATTHSRPTNKFTFCKNCKLQGHKFANCPTIECRYSHK
        YESV AALLH NPLPSLDVA+Q+ILFEEKRL I S LPSD AL T+  +PT++ +FCKNCKL GH FANCPTIECRY HK
Subjt:  YESVRAALLHCNPLPSLDVAVQEILFEEKRLGIVSFLPSDTALATTHSRPTNKFTFCKNCKLQGHKFANCPTIECRYSHK

XP_008450155.1 PREDICTED: uncharacterized protein LOC103491828 [Cucumis melo]4.1e-7059.77Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKLTHSGNVTSSDTTKNADVDLSNTTIQETTTEDIKYIERLEDWDSKNHQIITW
        MEK DIARPISTILDGSNYITWA+QMRSF IGRKLWRIVTGDITKP+K T     TS + T++ D + S+    ETT ED KYIERLEDWDSKNHQIITW
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKLTHSGNVTSSDTTKNADVDLSNTTIQETTTEDIKYIERLEDWDSKNHQIITW

Query:  --------------------------------------------------LDQAKISLGHIHLIKVLMGLCPEYESVRAALYESVRAALLHCNPLPSLDV
                                                          LDQAKIS  HI LIKVLMGL PE        YESVRAALLH N LPSLD 
Subjt:  --------------------------------------------------LDQAKISLGHIHLIKVLMGLCPEYESVRAALYESVRAALLHCNPLPSLDV

Query:  AVQEILFEEKRLGIVSFLPSDTALATTHSRPTNKFTFCKNCKLQGHKFANCPTIECRYSHK
        AVQEILFE+KRLG+VS LP D ALATTH R  N+ +FCKNCKL  HKFANCPTIECRY HK
Subjt:  AVQEILFEEKRLGIVSFLPSDTALATTHSRPTNKFTFCKNCKLQGHKFANCPTIECRYSHK

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]1.5e-7257.5Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKLTHSGNVTSSDTTKNADVDLSNTTIQETTTEDIKYIERLEDWDSKNHQIITW
        MEK ++ARPISTILDG+NYITWAHQMRSF IGRKLWRIVTGDITKPVK T        DTT+N D D S+ T+QETT E  KYIERLEDWDSKNHQIITW
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKLTHSGNVTSSDTTKNADVDLSNTTIQETTTEDIKYIERLEDWDSKNHQIITW

Query:  ---------------------------------------------------------------------LDQAKISLGHIHLIKVLMGLCPEYESVRAAL
                                                                             LDQAKI+  HI LIKVLMGL PE        
Subjt:  ---------------------------------------------------------------------LDQAKISLGHIHLIKVLMGLCPEYESVRAAL

Query:  YESVRAALLHCNPLPSLDVAVQEILFEEKRLGIVSFLPSDTALATTHSRPTNKFTFCKNCKLQGHKFANCPTIECRYSHK
        YESVRAALLH NPLPSLD A+QEILFEE RLGIVS LPSD ALATTHSR  N+  FCKNCKL GHKFANCPTIECRY HK
Subjt:  YESVRAALLHCNPLPSLDVAVQEILFEEKRLGIVSFLPSDTALATTHSRPTNKFTFCKNCKLQGHKFANCPTIECRYSHK

TrEMBL top hitse value%identityAlignment
A0A1S3BPL0 uncharacterized protein LOC1034918282.0e-7059.77Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKLTHSGNVTSSDTTKNADVDLSNTTIQETTTEDIKYIERLEDWDSKNHQIITW
        MEK DIARPISTILDGSNYITWA+QMRSF IGRKLWRIVTGDITKP+K T     TS + T++ D + S+    ETT ED KYIERLEDWDSKNHQIITW
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKLTHSGNVTSSDTTKNADVDLSNTTIQETTTEDIKYIERLEDWDSKNHQIITW

Query:  --------------------------------------------------LDQAKISLGHIHLIKVLMGLCPEYESVRAALYESVRAALLHCNPLPSLDV
                                                          LDQAKIS  HI LIKVLMGL PE        YESVRAALLH N LPSLD 
Subjt:  --------------------------------------------------LDQAKISLGHIHLIKVLMGLCPEYESVRAALYESVRAALLHCNPLPSLDV

Query:  AVQEILFEEKRLGIVSFLPSDTALATTHSRPTNKFTFCKNCKLQGHKFANCPTIECRYSHK
        AVQEILFE+KRLG+VS LP D ALATTH R  N+ +FCKNCKL  HKFANCPTIECRY HK
Subjt:  AVQEILFEEKRLGIVSFLPSDTALATTHSRPTNKFTFCKNCKLQGHKFANCPTIECRYSHK

A0A5A7TPN5 Putative mitochondrial protein2.0e-7059.77Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKLTHSGNVTSSDTTKNADVDLSNTTIQETTTEDIKYIERLEDWDSKNHQIITW
        MEK DIARPISTILDGSNYITWA+QMRSF IGRKLWRIVTGDITKP+K T     TS + T++ D + S+    ETT ED KYIERLEDWDSKNHQIITW
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKLTHSGNVTSSDTTKNADVDLSNTTIQETTTEDIKYIERLEDWDSKNHQIITW

Query:  --------------------------------------------------LDQAKISLGHIHLIKVLMGLCPEYESVRAALYESVRAALLHCNPLPSLDV
                                                          LDQAKIS  HI LIKVLMGL PE        YESVRAALLH N LPSLD 
Subjt:  --------------------------------------------------LDQAKISLGHIHLIKVLMGLCPEYESVRAALYESVRAALLHCNPLPSLDV

Query:  AVQEILFEEKRLGIVSFLPSDTALATTHSRPTNKFTFCKNCKLQGHKFANCPTIECRYSHK
        AVQEILFE+KRLG+VS LP D ALATTH R  N+ +FCKNCKL  HKFANCPTIECRY HK
Subjt:  AVQEILFEEKRLGIVSFLPSDTALATTHSRPTNKFTFCKNCKLQGHKFANCPTIECRYSHK

A0A5A7TXR0 Putative mitochondrial protein6.8e-7156.07Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKLTHSGNVTSSDTTKNADVDLSNTTIQETTTEDIKYIERLEDWDSKNHQIITW
        MEK+ +ARPISTILDG+NYITWAHQMRSF IGRKLWRIVTGDITKPVK T     TS + T++ D + S+  + E T EDI+YIERLEDWDSKNHQIITW
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKLTHSGNVTSSDTTKNADVDLSNTTIQETTTEDIKYIERLEDWDSKNHQIITW

Query:  ---------------------------------------------------------------------LDQAKISLGHIHLIKVLMGLCPEYESVRAAL
                                                                             LDQAKIS  HI LIKVLMGL  E        
Subjt:  ---------------------------------------------------------------------LDQAKISLGHIHLIKVLMGLCPEYESVRAAL

Query:  YESVRAALLHCNPLPSLDVAVQEILFEEKRLGIVSFLPSDTALATTHSRPTNKFTFCKNCKLQGHKFANCPTIECRYSHK
        YESVRAALLH NPLPSLD AVQEILFEEKRLGIVS LPSD ALATTH R  N+ +FCKNCKL GHKFANCPTIECRY +K
Subjt:  YESVRAALLHCNPLPSLDVAVQEILFEEKRLGIVSFLPSDTALATTHSRPTNKFTFCKNCKLQGHKFANCPTIECRYSHK

A0A5A7UKE6 Integrase, catalytic core5.6e-6553.57Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKLTHSGNVTSSDTTKNADVDLSNTTIQETTTEDIKYIERLEDWDSKNHQIITW
        MEKSDIARPIST LDGSNYITWAHQMRSF IGRKLW IVTGDITKPVK       T  ++ ++ D+        +TT EDIKYIERLEDWD KNHQIITW
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKLTHSGNVTSSDTTKNADVDLSNTTIQETTTEDIKYIERLEDWDSKNHQIITW

Query:  ---------------------------------------------------------------------LDQAKISLGHIHLIKVLMGLCPEYESVRAAL
                                                                             L+QAKISL HIHLIKVLMGL PE        
Subjt:  ---------------------------------------------------------------------LDQAKISLGHIHLIKVLMGLCPEYESVRAAL

Query:  YESVRAALLHCNPLPSLDVAVQEILFEEKRLGIVSFLPSDTALATTHSRPTNKFTFCKNCKLQGHKFANCPTIECRYSHK
        YESV AALLH NPLPSLDVA+Q+ILFEEKRL I S LPSD AL T+  +PT++ +FCKNCKL GH FANCPTIECRY HK
Subjt:  YESVRAALLHCNPLPSLDVAVQEILFEEKRLGIVSFLPSDTALATTHSRPTNKFTFCKNCKLQGHKFANCPTIECRYSHK

A0A5A7VJS5 Zinc finger, CCHC-type7.3e-6563.03Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKLTHSGNVTSSDTTKNADVDLSNTTIQETTTEDIKYIERLEDWDSKNHQIITW
        +EK+D+AR ISTILDG+NYITWAHQMRSF IGRKLWRIVTGDITKPVK T     T  + T++ D + S+  + ETTTEDIKYIERLEDWDSKNHQIITW
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKLTHSGNVTSSDTTKNADVDLSNTTIQETTTEDIKYIERLEDWDSKNHQIITW

Query:  LDQAKISLGHIHLIKVLMGLCPEYESVRAALYESVRAALLHCNPLPSLDVAVQEILFEEKRLGIVSFLPSDTALATTHSRPTNKFTFCKNCKLQGHKFAN
        L+                             YESV AALLH NPLPSLD  VQEILFEEKRLGI+SFLP D ALAT H R  N+ +FCKN KL G+KF N
Subjt:  LDQAKISLGHIHLIKVLMGLCPEYESVRAALYESVRAALLHCNPLPSLDVAVQEILFEEKRLGIVSFLPSDTALATTHSRPTNKFTFCKNCKLQGHKFAN

Query:  CPTIECRYSHK
        CPTIE RY +K
Subjt:  CPTIECRYSHK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAAAGTGACATTGCTCGTCCTATTAGCACCATTCTTGATGGCTCAAATTATATCACTTGGGCTCACCAAATGAGAAGTTTTTTTATCGGTCGAAAATTATGGCG
TATAGTGACTGGCGATATCACCAAACCTGTCAAACTCACTCATTCAGGAAATGTCACCAGTTCGGACACCACTAAAAATGCTGATGTAGACCTCTCAAATACTACCATTC
AGGAGACTACTACCGAAGACATCAAGTACATTGAAAGACTTGAGGACTGGGATAGCAAAAATCATCAAATCATCACATGGTTGGACCAGGCAAAAATCAGCCTTGGCCAT
ATTCATCTCATCAAAGTACTTATGGGACTCTGTCCAGAGTATGAATCTGTTCGGGCTGCTCTTTATGAATCTGTTCGGGCTGCTCTTTTACATTGCAACCCCCTACCATC
ACTTGATGTCGCCGTTCAGGAAATCCTATTTGAGGAGAAAAGACTTGGCATTGTCTCCTTTCTGCCCTCTGATACTGCCCTCGCAACCACTCACTCACGGCCTACTAATA
AGTTCACTTTCTGCAAAAATTGTAAACTTCAGGGTCATAAGTTTGCTAACTGTCCTACCATTGAGTGCAGGTATTCTCACAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAAAGTGACATTGCTCGTCCTATTAGCACCATTCTTGATGGCTCAAATTATATCACTTGGGCTCACCAAATGAGAAGTTTTTTTATCGGTCGAAAATTATGGCG
TATAGTGACTGGCGATATCACCAAACCTGTCAAACTCACTCATTCAGGAAATGTCACCAGTTCGGACACCACTAAAAATGCTGATGTAGACCTCTCAAATACTACCATTC
AGGAGACTACTACCGAAGACATCAAGTACATTGAAAGACTTGAGGACTGGGATAGCAAAAATCATCAAATCATCACATGGTTGGACCAGGCAAAAATCAGCCTTGGCCAT
ATTCATCTCATCAAAGTACTTATGGGACTCTGTCCAGAGTATGAATCTGTTCGGGCTGCTCTTTATGAATCTGTTCGGGCTGCTCTTTTACATTGCAACCCCCTACCATC
ACTTGATGTCGCCGTTCAGGAAATCCTATTTGAGGAGAAAAGACTTGGCATTGTCTCCTTTCTGCCCTCTGATACTGCCCTCGCAACCACTCACTCACGGCCTACTAATA
AGTTCACTTTCTGCAAAAATTGTAAACTTCAGGGTCATAAGTTTGCTAACTGTCCTACCATTGAGTGCAGGTATTCTCACAAGTGA
Protein sequenceShow/hide protein sequence
MEKSDIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKLTHSGNVTSSDTTKNADVDLSNTTIQETTTEDIKYIERLEDWDSKNHQIITWLDQAKISLGH
IHLIKVLMGLCPEYESVRAALYESVRAALLHCNPLPSLDVAVQEILFEEKRLGIVSFLPSDTALATTHSRPTNKFTFCKNCKLQGHKFANCPTIECRYSHK