CuGenDBv2

Gene ID	PI0006284
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr06:12118577..12119278
RNA-Seq Expression	PI0006284
Synteny	PI0006284
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006281 - DNA repair (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004518 - nuclease activity (molecular function)
InterPro domains	IPR004808 - AP endonuclease 1 IPR036691 - Endonuclease/exonuclease/phosphatase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0026071.1 uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]

3.1e-79

65.91

Show/hide

Query:  WCSWNIRGLNDPVKCRAMSD---SLRVSSVGFCCLLETRVREGNFCSISRRFGDDWSYSCSYSRSGVGRIWVMWKKDRFDFTPSVVDEQFVSGVISDLHS
        W    I G + P++    +D    +  S VGFCCLLETRVREGNF S+SRRF + W YSCSYS SGVGRIWVMWKK+RF F+  V+DEQFV+G ++DL S
Subjt:  WCSWNIRGLNDPVKCRAMSD---SLRVSSVGFCCLLETRVREGNFCSISRRFGDDWSYSCSYSRSGVGRIWVMWKKDRFDFTPSVVDEQFVSGVISDLHS

Query:  GVTVEVLCVYASNSNMDRRVFWRWLVEISSSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDR
        GV VEV CVYASNSN++RR+ W  LVEI+S+WSSPGVVM DFNAIRVHSEA  GSP+  +ME+F+LAIR+ADLVE +VQGNWFTWTSKV+GSG LRRLDR
Subjt:  GVTVEVLCVYASNSNMDRRVFWRWLVEISSSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDR

Query:  ILVNEQGLMAWPSLRVTVLP
        +LVN+  L  WP++ V VLP
Subjt:  ILVNEQGLMAWPSLRVTVLP

KAA0049770.1 hypothetical protein E6C27_scaffold76G001230 [Cucumis melo var. makuwa]

2.4e-79

73.68

Show/hide

Query:  VKCRAMSDSLRVSSVGFCCLLETRVREGNFCSISRRFGDDWSYSCSYSRSGVGRIWVMWKKDRFDFTPSVVDEQFVSGVISDLHSGVTVEVLCVYASNSN
        +K +A+ D L  SS+GFCCLLETRVREGNF S+SRRFG+ W YSCSYS SGVGRIWVMWKK+RF F+  V+DEQFV+G ++DL SGV VEV CVYASNSN
Subjt:  VKCRAMSDSLRVSSVGFCCLLETRVREGNFCSISRRFGDDWSYSCSYSRSGVGRIWVMWKKDRFDFTPSVVDEQFVSGVISDLHSGVTVEVLCVYASNSN

Query:  MDRRVFWRWLVEISSSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDRILVNE
        ++RR+ WR LVEI+S+WS+PGVVMGDFNAIRVHSEA GGSP+  +ME+FDLAIR+ADL+E +VQGNWFTWTSKV GSG LRRLDR+LVN+
Subjt:  MDRRVFWRWLVEISSSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDRILVNE

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]

4.3e-81

71.36

Show/hide

Query:  GLNDPVKCRAMSDSLRVSSVGFCCLLETRVREGNFCSISRRFGDDWSYSCSYSRSGVGRIWVMWKKDRFDFTPSVVDEQFVSGVISDLHSGVTVEVLCVY
        G+   +K +A+SD L  SSVGFCCLLETRVRE NF  +SRRFG+ W YSCSYS SGVGRIWV+WKK+RF F+  VVDEQFV+G ++DL SGV VEV CVY
Subjt:  GLNDPVKCRAMSDSLRVSSVGFCCLLETRVREGNFCSISRRFGDDWSYSCSYSRSGVGRIWVMWKKDRFDFTPSVVDEQFVSGVISDLHSGVTVEVLCVY

Query:  ASNSNMDRRVFWRWLVEISSSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMA
        ASNSN++RR+ WR LVEI+S WSSP VVMGDFNAIRVH EA GGSP+  +ME+FDLA R+ADLVE +VQGNWFTWTSKV GSG LRRLDRILVN++ L A
Subjt:  ASNSNMDRRVFWRWLVEISSSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMA

Query:  WPSLRV
        WP+L V
Subjt:  WPSLRV

TYK23422.1 uncharacterized protein E5676_scaffold605G00030 [Cucumis melo var. makuwa]

6.7e-74

71.89

Show/hide

Query:  VGFCCLLETRVREGNFCSISRRFGDDWSYSCSYSRSGVGRIWVMWKKDRFDFTPSVVDEQFVSGVISDLHSGVTVEVLCVYASNSNMDRRVFWRWLVEIS
        +GFCCLLETRV E NF S+SRRFG+   YSCSYS S VGRIWVMWKK+RF F+   +DEQFV+G ++DL SGV +EV CVYASNSN++RR+ W WLVEI+
Subjt:  VGFCCLLETRVREGNFCSISRRFGDDWSYSCSYSRSGVGRIWVMWKKDRFDFTPSVVDEQFVSGVISDLHSGVTVEVLCVYASNSNMDRRVFWRWLVEIS

Query:  SSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPSL
        S WSSPGVVMGDFNAIR HSEA GGSP+  +ME+FDLAIR+ DLVE +VQGNWFTWTSKV  SG LRRLDRILVN++ L AWP+L
Subjt:  SSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPSL

TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]

3.1e-79

65.91

Show/hide

Query:  WCSWNIRGLNDPVKCRAMSD---SLRVSSVGFCCLLETRVREGNFCSISRRFGDDWSYSCSYSRSGVGRIWVMWKKDRFDFTPSVVDEQFVSGVISDLHS
        W    I G + P++    +D    +  S VGFCCLLETRVREGNF S+SRRF + W YSCSYS SGVGRIWVMWKK+RF F+  V+DEQFV+G ++DL S
Subjt:  WCSWNIRGLNDPVKCRAMSD---SLRVSSVGFCCLLETRVREGNFCSISRRFGDDWSYSCSYSRSGVGRIWVMWKKDRFDFTPSVVDEQFVSGVISDLHS

Query:  GVTVEVLCVYASNSNMDRRVFWRWLVEISSSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDR
        GV VEV CVYASNSN++RR+ W  LVEI+S+WSSPGVVM DFNAIRVHSEA  GSP+  +ME+F+LAIR+ADLVE +VQGNWFTWTSKV+GSG LRRLDR
Subjt:  GVTVEVLCVYASNSNMDRRVFWRWLVEISSSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDR

Query:  ILVNEQGLMAWPSLRVTVLP
        +LVN+  L  WP++ V VLP
Subjt:  ILVNEQGLMAWPSLRVTVLP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SPE5 Reverse transcriptase domain-containing protein

1.5e-79

65.91

Show/hide

Query:  WCSWNIRGLNDPVKCRAMSD---SLRVSSVGFCCLLETRVREGNFCSISRRFGDDWSYSCSYSRSGVGRIWVMWKKDRFDFTPSVVDEQFVSGVISDLHS
        W    I G + P++    +D    +  S VGFCCLLETRVREGNF S+SRRF + W YSCSYS SGVGRIWVMWKK+RF F+  V+DEQFV+G ++DL S
Subjt:  WCSWNIRGLNDPVKCRAMSD---SLRVSSVGFCCLLETRVREGNFCSISRRFGDDWSYSCSYSRSGVGRIWVMWKKDRFDFTPSVVDEQFVSGVISDLHS

Query:  GVTVEVLCVYASNSNMDRRVFWRWLVEISSSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDR
        GV VEV CVYASNSN++RR+ W  LVEI+S+WSSPGVVM DFNAIRVHSEA  GSP+  +ME+F+LAIR+ADLVE +VQGNWFTWTSKV+GSG LRRLDR
Subjt:  GVTVEVLCVYASNSNMDRRVFWRWLVEISSSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDR

Query:  ILVNEQGLMAWPSLRVTVLP
        +LVN+  L  WP++ V VLP
Subjt:  ILVNEQGLMAWPSLRVTVLP

A0A5A7U3C2 Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein

1.2e-79

73.68

Show/hide

Query:  VKCRAMSDSLRVSSVGFCCLLETRVREGNFCSISRRFGDDWSYSCSYSRSGVGRIWVMWKKDRFDFTPSVVDEQFVSGVISDLHSGVTVEVLCVYASNSN
        +K +A+ D L  SS+GFCCLLETRVREGNF S+SRRFG+ W YSCSYS SGVGRIWVMWKK+RF F+  V+DEQFV+G ++DL SGV VEV CVYASNSN
Subjt:  VKCRAMSDSLRVSSVGFCCLLETRVREGNFCSISRRFGDDWSYSCSYSRSGVGRIWVMWKKDRFDFTPSVVDEQFVSGVISDLHSGVTVEVLCVYASNSN

Query:  MDRRVFWRWLVEISSSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDRILVNE
        ++RR+ WR LVEI+S+WS+PGVVMGDFNAIRVHSEA GGSP+  +ME+FDLAIR+ADL+E +VQGNWFTWTSKV GSG LRRLDR+LVN+
Subjt:  MDRRVFWRWLVEISSSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDRILVNE

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein

2.1e-81

71.36

Show/hide

Query:  GLNDPVKCRAMSDSLRVSSVGFCCLLETRVREGNFCSISRRFGDDWSYSCSYSRSGVGRIWVMWKKDRFDFTPSVVDEQFVSGVISDLHSGVTVEVLCVY
        G+   +K +A+SD L  SSVGFCCLLETRVRE NF  +SRRFG+ W YSCSYS SGVGRIWV+WKK+RF F+  VVDEQFV+G ++DL SGV VEV CVY
Subjt:  GLNDPVKCRAMSDSLRVSSVGFCCLLETRVREGNFCSISRRFGDDWSYSCSYSRSGVGRIWVMWKKDRFDFTPSVVDEQFVSGVISDLHSGVTVEVLCVY

Query:  ASNSNMDRRVFWRWLVEISSSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMA
        ASNSN++RR+ WR LVEI+S WSSP VVMGDFNAIRVH EA GGSP+  +ME+FDLA R+ADLVE +VQGNWFTWTSKV GSG LRRLDRILVN++ L A
Subjt:  ASNSNMDRRVFWRWLVEISSSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMA

Query:  WPSLRV
        WP+L V
Subjt:  WPSLRV

A0A5D3DIN5 Uncharacterized protein

3.3e-74

71.89

Show/hide

Query:  VGFCCLLETRVREGNFCSISRRFGDDWSYSCSYSRSGVGRIWVMWKKDRFDFTPSVVDEQFVSGVISDLHSGVTVEVLCVYASNSNMDRRVFWRWLVEIS
        +GFCCLLETRV E NF S+SRRFG+   YSCSYS S VGRIWVMWKK+RF F+   +DEQFV+G ++DL SGV +EV CVYASNSN++RR+ W WLVEI+
Subjt:  VGFCCLLETRVREGNFCSISRRFGDDWSYSCSYSRSGVGRIWVMWKKDRFDFTPSVVDEQFVSGVISDLHSGVTVEVLCVYASNSNMDRRVFWRWLVEIS

Query:  SSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPSL
        S WSSPGVVMGDFNAIR HSEA GGSP+  +ME+FDLAIR+ DLVE +VQGNWFTWTSKV  SG LRRLDRILVN++ L AWP+L
Subjt:  SSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPSL

A0A5D3DXE4 Reverse transcriptase domain-containing protein

1.5e-79

65.91

Show/hide

Query:  WCSWNIRGLNDPVKCRAMSD---SLRVSSVGFCCLLETRVREGNFCSISRRFGDDWSYSCSYSRSGVGRIWVMWKKDRFDFTPSVVDEQFVSGVISDLHS
        W    I G + P++    +D    +  S VGFCCLLETRVREGNF S+SRRF + W YSCSYS SGVGRIWVMWKK+RF F+  V+DEQFV+G ++DL S
Subjt:  WCSWNIRGLNDPVKCRAMSD---SLRVSSVGFCCLLETRVREGNFCSISRRFGDDWSYSCSYSRSGVGRIWVMWKKDRFDFTPSVVDEQFVSGVISDLHS

Query:  GVTVEVLCVYASNSNMDRRVFWRWLVEISSSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDR
        GV VEV CVYASNSN++RR+ W  LVEI+S+WSSPGVVM DFNAIRVHSEA  GSP+  +ME+F+LAIR+ADLVE +VQGNWFTWTSKV+GSG LRRLDR
Subjt:  GVTVEVLCVYASNSNMDRRVFWRWLVEISSSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDR

Query:  ILVNEQGLMAWPSLRVTVLP
        +LVN+  L  WP++ V VLP
Subjt:  ILVNEQGLMAWPSLRVTVLP

SwissProt top hits

e value

%identity

Alignment

O00370 LINE-1 retrotransposable element ORF2 protein

6.9e-05

21.39

Show/hide

Query:  NIRGLNDPVKCRAMSDSLRVSSVGFCCLLETRV--REGNFCSISRRFGDDWSYSCSYSRSGVGRIWVMWKKDRFDFTPSVV--DEQFVSGVISDLHSGVT
        N+ GLN P+K   ++  ++      CC+ ET +  R+ +   I + +   +  +    ++GV     +   D+ DF P+ +  D++    ++        
Subjt:  NIRGLNDPVKCRAMSDSLRVSSVGFCCLLETRV--REGNFCSISRRFGDDWSYSCSYSRSGVGRIWVMWKKDRFDFTPSVV--DEQFVSGVISDLHSGVT

Query:  VEVLCVYASNSNMDRRVFWRWLVEISSSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVEL
        + +L +YA N+   R +  + L ++     S  ++MGDFN      +      V  D +E + A+ + DL+++
Subjt:  VEVLCVYASNSNMDRRVFWRWLVEISSSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVEL

P11369 LINE-1 retrotransposable element ORF2 protein

4.3e-07

22.57

Show/hide

Query:  SWCSWNIRGLNDPVKCRAMSDSLRVSSVGFCCLLETRVREGNFCSISRRFGDDWSYSCSYSRSGVGRI--WVMWKKDRFDFTPSVV--DEQFVSGVISDL
        S  S NI GLN P+K   ++D L      FCCL ET +RE +     R +     +   +  +G+ +     +   D+ DF P V+  D++    +I   
Subjt:  SWCSWNIRGLNDPVKCRAMSDSLRVSSVGFCCLLETRVREGNFCSISRRFGDDWSYSCSYSRSGVGRI--WVMWKKDRFDFTPSVV--DEQFVSGVISDL

Query:  HSGVTVEVLCVYASNSNMDRRVFWR-WLVEISSSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRG------
             + +L +YA N+      F R  LV++ +  +   +++GDFN      +      +  D  +    +++ DL ++     + T+  K +G      
Subjt:  HSGVTVEVLCVYASNSNMDRRVFWR-WLVEISSSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRG------

Query:  -SGRLRRLDRILVNEQGLMAWPSLRV
          G   ++D I+ ++ GL  + ++ +
Subjt:  -SGRLRRLDRILVNEQGLMAWPSLRV

Arabidopsis top hits

e value

%identity

Alignment

AT1G40390.1 DNAse I-like superfamily protein

2.1e-09

31.78

Show/hide

Query:  NSNMDRRVFWRWLVEISSS---WSSPGVVMGDFNAIRVHSEACGGSPVT---SDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDRILVNEQ
        N+  +RR  W  +  +S+S    +SP +V+GDFN I   +E     P       +E+    +R++DLV+L  +G  +TW++  + +  LR+LDR +VN  
Subjt:  NSNMDRRVFWRWLVEISSS---WSSPGVVMGDFNAIRVHSEACGGSPVT---SDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDRILVNEQ

Query:  GLMAWPS
         L  +P+
Subjt:  GLMAWPS

AT1G43760.1 DNAse I-like superfamily protein

3.2e-05

28.75

Show/hide

Query:  VVMGDFNAIRV---HSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPS
        +++GDF+ I     H      S     +EEF   +R++DLV++  +G  +TW++    +  +R+LDR + N     ++PS
Subjt:  VVMGDFNAIRV---HSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTGGTCCTATGGGGACAGTTGTGGATGAGAGTTCCCATGATTAGTTGGTGTTCGTGGAATATACGAGGTCTTAATGACCCGGTGAAGTGCAGGGCGATGAGTGATTC
CTTGAGGGTTTCCTCTGTTGGGTTTTGTTGTCTCCTGGAGACAAGAGTTCGTGAGGGAAATTTTTGTTCTATTTCTAGGAGGTTTGGGGACGATTGGAGTTACTCTTGTA
GCTATAGCAGAAGTGGTGTGGGTCGGATTTGGGTGATGTGGAAGAAGGATAGGTTTGATTTTACTCCTAGCGTGGTGGATGAGCAGTTTGTTTCAGGTGTCATTTCTGAT
TTGCATTCTGGTGTGACTGTGGAGGTGTTATGTGTTTATGCCTCTAATAGTAATATGGACCGTCGTGTGTTTTGGCGTTGGTTAGTTGAGATCTCTTCTAGTTGGTCGAG
TCCAGGTGTGGTTATGGGAGATTTTAATGCAATTCGAGTGCACTCTGAAGCTTGTGGTGGGAGTCCGGTTACTAGTGATATGGAGGAATTTGATCTAGCTATTCGCGAGG
CTGACTTGGTTGAGCTAGCTGTTCAGGGAAACTGGTTCACTTGGACCAGCAAGGTGCGAGGTTCTGGGCGGTTGCGTCGGCTTGATCGTATTTTGGTTAATGAGCAGGGG
TTAATGGCTTGGCCTAGTCTGCGTGTTACTGTTTTGCCTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MVVLWGQLWMRVPMISWCSWNIRGLNDPVKCRAMSDSLRVSSVGFCCLLETRVREGNFCSISRRFGDDWSYSCSYSRSGVGRIWVMWKKDRFDFTPSVVDEQFVSGVISD
LHSGVTVEVLCVYASNSNMDRRVFWRWLVEISSSWSSPGVVMGDFNAIRVHSEACGGSPVTSDMEEFDLAIREADLVELAVQGNWFTWTSKVRGSGRLRRLDRILVNEQG
LMAWPSLRVTVLP

PI0006284 (gene) of Melon (PI 482460) v1 genome