CuGenDBv2

Gene ID	PI0006299
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	DNA repair protein XRCC4
Genome location	chr01:1768600..1773102
RNA-Seq Expression	PI0006299
Synteny	PI0006299
Gene Ontology terms	GO:0006303 - double-strand break repair via nonhomologous end joining (biological process) GO:0006310 - DNA recombination (biological process) GO:0010165 - response to X-ray (biological process) GO:0051103 - DNA ligation involved in DNA repair (biological process) GO:0051351 - positive regulation of ligase activity (biological process) GO:0005958 - DNA-dependent protein kinase-DNA ligase 4 complex (cellular component) GO:0032807 - DNA ligase IV complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0016874 - ligase activity (molecular function)
InterPro domains	IPR010585 - DNA repair protein XRCC4 IPR014751 - DNA repair protein XRCC4-like, C-terminal IPR038051 - XRCC4-like, N-terminal domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6571850.1 DNA repair protein XRCC4, partial [Cucurbita argyrosperma subsp. sororia]

9.6e-113

87.98

Show/hide

Query:  MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLS
        MDAIRHTCLKLEVPTNAQP+ R SIFVKGTW  HRFDLSITDGLNAWTCHATEDEVRLRA QWDQEPSDYV+LAERYLGFQQP S+YGFAD GNGDKRLS
Subjt:  MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTF+KEGMKLEWRWKC+ ASDNKTTTAGIL+FLMDANIRLSEEVVRKTQS E+LK ESEKCLAQSE+IC+EKVEFETA+YAKFLNVLN KKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LPKQTTTSSKLKQEEYSSDKTESFDEESDAEKN
         PKQTTTSSKLKQ++  SDKTESFD++SDAEKN
Subjt:  LPKQTTTSSKLKQEEYSSDKTESFDEESDAEKN

XP_004136882.1 DNA repair protein XRCC4 [Cucumis sativus]

1.6e-120

95.28

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Query:  MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLS
        MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNH RFDLSITDG +AWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIY FADAGNG KRLS
Subjt:  MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRK QSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LPKQTTTSSKLKQEEYSSDKTESFDEESDAEKN
        L +QT T SKLKQEEYSSDKTESFD+ESDAEKN
Subjt:  LPKQTTTSSKLKQEEYSSDKTESFDEESDAEKN

XP_008455175.1 PREDICTED: DNA repair protein XRCC4 [Cucumis melo]

3.5e-123

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Query:  MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLS
        MDAIRHTCLKLEVPTNAQP+ERSSIFVKGTWNHHRFDLSITDGL+AWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNG KRLS
Subjt:  MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTFDKEGMKLEWRWKCQPASDNKTTTA ILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LPKQTTTSSKLKQEEYSSDKTESFDEESDAEKN
        L KQTTT SKLKQEEYSSDKTESFD+ESDAEKN
Subjt:  LPKQTTTSSKLKQEEYSSDKTESFDEESDAEKN

XP_022952201.1 DNA repair protein XRCC4 [Cucurbita moschata]

9.6e-113

87.98

Show/hide

Query:  MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLS
        MDAIRHTCLKLEVPTNAQP+ R SIFVKGTW  HRFDLSITDGLNAWTCHATEDEVRLRA QWDQEPSDYV+LAERYLGFQQP S+YGFAD GNGDKRLS
Subjt:  MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTF+KEGMKLEWRWKC+ ASDNKTTTAGIL+FLMDANIRLSEEVVRKTQS E+LK ESEKCLAQSE+IC+EKVEFETA+YAKFLNVLN KKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LPKQTTTSSKLKQEEYSSDKTESFDEESDAEKN
         PKQTTTSSKLKQ++  SDKTESFD++SDAEKN
Subjt:  LPKQTTTSSKLKQEEYSSDKTESFDEESDAEKN

XP_038888651.1 DNA repair protein XRCC4 [Benincasa hispida]

1.4e-119

92.7

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Query:  MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLS
        MDA RHTCLKLEVPTNAQPN+RSSIFVKGTWNHH FDLSITDGLNAW+CHATEDEV LRAAQWDQEPSDYVALAERYLGFQQPGS+YGF DAGNGD+RLS
Subjt:  MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTFDKEGMKLEWRWKC+PASDNKTTTAGIL+FLMDANIRLSEEVVRKTQ  ERLK+ESE+CLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LPKQTTTSSKLKQEEYSSDKTESFDEESDAEKN
        L KQTTT SKLKQEEYSSDKTESFD+ESDAEKN
Subjt:  LPKQTTTSSKLKQEEYSSDKTESFDEESDAEKN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K2L2 Uncharacterized protein

7.9e-121

95.28

Show/hide

Query:  MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLS
        MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNH RFDLSITDG +AWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIY FADAGNG KRLS
Subjt:  MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRK QSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LPKQTTTSSKLKQEEYSSDKTESFDEESDAEKN
        L +QT T SKLKQEEYSSDKTESFD+ESDAEKN
Subjt:  LPKQTTTSSKLKQEEYSSDKTESFDEESDAEKN

A0A1S3BZW1 DNA repair protein XRCC4

1.7e-123

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Query:  MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLS
        MDAIRHTCLKLEVPTNAQP+ERSSIFVKGTWNHHRFDLSITDGL+AWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNG KRLS
Subjt:  MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTFDKEGMKLEWRWKCQPASDNKTTTA ILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LPKQTTTSSKLKQEEYSSDKTESFDEESDAEKN
        L KQTTT SKLKQEEYSSDKTESFD+ESDAEKN
Subjt:  LPKQTTTSSKLKQEEYSSDKTESFDEESDAEKN

A0A5A7SK69 DNA repair protein XRCC4

1.7e-123

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Query:  MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLS
        MDAIRHTCLKLEVPTNAQP+ERSSIFVKGTWNHHRFDLSITDGL+AWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNG KRLS
Subjt:  MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTFDKEGMKLEWRWKCQPASDNKTTTA ILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LPKQTTTSSKLKQEEYSSDKTESFDEESDAEKN
        L KQTTT SKLKQEEYSSDKTESFD+ESDAEKN
Subjt:  LPKQTTTSSKLKQEEYSSDKTESFDEESDAEKN

A0A6J1GJL0 DNA repair protein XRCC4

4.6e-113

87.98

Show/hide

Query:  MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLS
        MDAIRHTCLKLEVPTNAQP+ R SIFVKGTW  HRFDLSITDGLNAWTCHATEDEVRLRA QWDQEPSDYV+LAERYLGFQQP S+YGFAD GNGDKRLS
Subjt:  MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTF+KEGMKLEWRWKC+ ASDNKTTTAGIL+FLMDANIRLSEEVVRKTQS E+LK ESEKCLAQSE+IC+EKVEFETA+YAKFLNVLN KKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LPKQTTTSSKLKQEEYSSDKTESFDEESDAEKN
         PKQTTTSSKLKQ++  SDKTESFD++SDAEKN
Subjt:  LPKQTTTSSKLKQEEYSSDKTESFDEESDAEKN

A0A6J1I7A5 DNA repair protein XRCC4 isoform X1

3.9e-112

87.55

Show/hide

Query:  MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLS
        MDAIRHTCLKLEVPTNAQP+ R SIFVKGTW  HRFDLSITDGLNAWTCHATEDEVRLRA QWDQEPSDYV LAERYLGFQQP S+Y FAD GNGDKRLS
Subjt:  MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTF+KEGMKLEWRWKC+ ASDNKTTTAGIL+FLMDANIRLSEEVVRKTQS E+LK ESEKCLAQSE+IC+EKVEFETA+YAKFLNVLN KKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LPKQTTTSSKLKQEEYSSDKTESFDEESDAEKN
         PKQTTTSSKLKQ++  SDKTESFD++SDAEKN
Subjt:  LPKQTTTSSKLKQEEYSSDKTESFDEESDAEKN

SwissProt top hits

e value

%identity

Alignment

Q13426 DNA repair protein XRCC4

2.6e-04

24.88

Show/hide

Query:  FDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVA-LAERYLGFQQPGSIYGFADAGNGDKRLSWTFDKEGMK-LEWR---WKCQPASDNKTTTAGIL
        F +++TDG +AWT   +E E+   A     E   YV  L +  L    P  +Y F    N  K   + F ++ +K + +R   +  +   +       ++
Subjt:  FDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVA-LAERYLGFQQPGSIYGFADAGNGDKRLSWTFDKEGMK-LEWR---WKCQPASDNKTTTAGIL

Query:  NFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLPKQTTTSSK-LKQE-------EYSSDKTE
         + +D       +     +  ERL  +      + EK    K   ET +Y +F+ VLN KK K+R   ++L        K +KQE       E ++D+  
Subjt:  NFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLPKQTTTSSK-LKQE-------EYSSDKTE

Query:  SFDEESDAE
         +DE +D E
Subjt:  SFDEESDAE

Q682V0 DNA repair protein XRCC4

5.3e-74

61.74

Show/hide

Query:  RHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLSWTFD
        +HTCL+LE+ + A P     IFVKGTW++ RFD+S+TDG ++W C+ATE+EV  RAAQWDQ  S+Y+ LAE+YLGFQQP S+Y F+DA  G KRLSWTF+
Subjt:  RHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLSWTFD

Query:  KEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLPKQ
        KEG KLEWRWKC+P+ D+K  T GIL+FLM+ANIRLSEEVV KT+S E++++E+E+CLAQ EK+CDEK EFE+A YAKFL+VLNAKKAKLR  RD+    
Subjt:  KEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLPKQ

Query:  TTTSSKLKQEEYSSDKTESFDE-ESDAEKN
           S ++ +EE S+DK ESF+   SD EK+
Subjt:  TTTSSKLKQEEYSSDKTESFDE-ESDAEKN

Arabidopsis top hits

e value

%identity

Alignment

AT1G61410.1 DNA double-strand break repair and VJ recombination XRCC4

2.0e-20

59.41

Show/hide

Query:  MDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLPKQTTTSSKLKQEEYSSDKTESFDE-ESDAEK
        M+ANIRLSEEVV KT+S E++K+E+E+CLAQ EK+CDEK EFE A YAKFL+VLNAKKAKLR  RD+       S +  +EE S+ K ESF+   SD E+
Subjt:  MDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLPKQTTTSSKLKQEEYSSDKTESFDE-ESDAEK

Query:  N
        +
Subjt:  N

AT3G23100.1 homolog of human DNA ligase iv-binding protein XRCC4

3.8e-75

61.74

Show/hide

Query:  RHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLSWTFD
        +HTCL+LE+ + A P     IFVKGTW++ RFD+S+TDG ++W C+ATE+EV  RAAQWDQ  S+Y+ LAE+YLGFQQP S+Y F+DA  G KRLSWTF+
Subjt:  RHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLSWTFD

Query:  KEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLPKQ
        KEG KLEWRWKC+P+ D+K  T GIL+FLM+ANIRLSEEVV KT+S E++++E+E+CLAQ EK+CDEK EFE+A YAKFL+VLNAKKAKLR  RD+    
Subjt:  KEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLPKQ

Query:  TTTSSKLKQEEYSSDKTESFDE-ESDAEKN
           S ++ +EE S+DK ESF+   SD EK+
Subjt:  TTTSSKLKQEEYSSDKTESFDE-ESDAEKN

AT3G23100.2 homolog of human DNA ligase iv-binding protein XRCC4

3.8e-75

61.74

Show/hide

Query:  RHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLSWTFD
        +HTCL+LE+ + A P     IFVKGTW++ RFD+S+TDG ++W C+ATE+EV  RAAQWDQ  S+Y+ LAE+YLGFQQP S+Y F+DA  G KRLSWTF+
Subjt:  RHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLSWTFD

Query:  KEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLPKQ
        KEG KLEWRWKC+P+ D+K  T GIL+FLM+ANIRLSEEVV KT+S E++++E+E+CLAQ EK+CDEK EFE+A YAKFL+VLNAKKAKLR  RD+    
Subjt:  KEGMKLEWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLPKQ

Query:  TTTSSKLKQEEYSSDKTESFDE-ESDAEKN
           S ++ +EE S+DK ESF+   SD EK+
Subjt:  TTTSSKLKQEEYSSDKTESFDE-ESDAEKN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGACGCAATCAGGCACACATGCCTGAAGCTTGAAGTGCCAACCAACGCCCAGCCGAACGAAAGAAGCTCCATCTTCGTCAAAGGCACTTGGAATCATCATCGCTTCGA
TCTCTCCATCACCGACGGCCTCAACGCTTGGACGTGCCATGCGACGGAGGACGAGGTTCGATTGCGCGCTGCACAATGGGACCAAGAACCGTCGGACTATGTGGCATTGG
CCGAGCGCTATTTAGGGTTTCAACAGCCTGGTTCGATCTATGGCTTTGCCGATGCTGGAAATGGGGACAAGAGGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTG
GAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAGACAACTACAGCAGGAATATTGAACTTTCTTATGGATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAA
AACTCAATCAGTTGAGAGGCTGAAGGCGGAATCTGAGAAGTGTTTGGCTCAGAGTGAGAAGATTTGTGATGAAAAGGTGGAGTTTGAAACTGCAATATATGCAAAGTTTC
TAAATGTCTTGAACGCAAAGAAGGCAAAGCTTAGAGAGTACAGAGATCAGCTTCCAAAACAAACTACTACCAGTAGCAAACTGAAACAAGAAGAGTACTCCTCTGATAAA
ACCGAATCTTTCGATGAAGAAAGCGATGCAGAAAAGAACTGA

mRNA sequence

Show/hide mRNA sequence

ATTTCACGCGCCATAGGAACAGACGGTTCATGAAAAGATGTTCGAATTAGACTGCACGTTCCTCCTTTGACCTCGAGCAGCCTTCCACCATTAGCATTTTGAAAGGCGTA
GTCAAAACAGCTCCATGGACGCAATCAGGCACACATGCCTGAAGCTTGAAGTGCCAACCAACGCCCAGCCGAACGAAAGAAGCTCCATCTTCGTCAAAGGCACTTGGAAT
CATCATCGCTTCGATCTCTCCATCACCGACGGCCTCAACGCTTGGACGTGCCATGCGACGGAGGACGAGGTTCGATTGCGCGCTGCACAATGGGACCAAGAACCGTCGGA
CTATGTGGCATTGGCCGAGCGCTATTTAGGGTTTCAACAGCCTGGTTCGATCTATGGCTTTGCCGATGCTGGAAATGGGGACAAGAGGCTTTCTTGGACATTTGACAAAG
AAGGGATGAAGTTGGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAGACAACTACAGCAGGAATATTGAACTTTCTTATGGATGCAAACATAAGGCTGAGCGAA
GAGGTTGTGAGAAAAACTCAATCAGTTGAGAGGCTGAAGGCGGAATCTGAGAAGTGTTTGGCTCAGAGTGAGAAGATTTGTGATGAAAAGGTGGAGTTTGAAACTGCAAT
ATATGCAAAGTTTCTAAATGTCTTGAACGCAAAGAAGGCAAAGCTTAGAGAGTACAGAGATCAGCTTCCAAAACAAACTACTACCAGTAGCAAACTGAAACAAGAAGAGT
ACTCCTCTGATAAAACCGAATCTTTCGATGAAGAAAGCGATGCAGAAAAGAACTGACAAAGTGGTATAACTTGCGAATCCAAGGAATGTTACATGAAATAAGTTGGATTT
GTCATATGTGATAGTATGTTAAACTTTCTTTCTTTCTCTCTTTCTTATTTGAGCACAAACACAAATTTGGAGATTGAGGATTTGAATCTTGTACTGATGAGCTATGTTTA
TAGAAACAGCAACGACACAGAATACTACACTATGGAAAAAAAAATATATATTATTGTTGGATTTTGGTTTTGGCTGAAAGTGTATTTGAGTCATGGCTCTTATTGGAGTA
CAGTGTAACTTCAACTTTAAAA

Protein sequence

Show/hide protein sequence

MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHHRFDLSITDGLNAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGDKRLSWTFDKEGMKL
EWRWKCQPASDNKTTTAGILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLPKQTTTSSKLKQEEYSSDK
TESFDEESDAEKN

PI0006299 (gene) of Melon (PI 482460) v1 genome