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PI0006304 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006304
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr03:16453473..16455824
RNA-Seq ExpressionPI0006304
SyntenyPI0006304
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]8.5e-5471.63Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNLNLRWGNDSQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL
        G  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDP+ NTYN+GWRDN NLRWGND+Q+  QA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNLNLRWGNDSQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPAQPDHANVSVISLRSGKTLETPSSEEK
        T AISK++GKGKLPAQPD+ANVS ISLRSGK L+TP+++EK
Subjt:  TNAISKLEGKGKLPAQPDHANVSVISLRSGKTLETPSSEEK

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.5e-5472.34Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNLNLRWGNDSQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL
        G   KV KCGVCGLVGHPNDKC  ++E+ N++R+YDPHSNTYN+GWRDN NLRWGND+Q+  QA S+S+NQGTNLED++KAL TNT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNLNLRWGNDSQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPAQPDHANVSVISLRSGKTLETPSSEEK
        T AISK++GKGKLPAQPD+ANVS ISLRSGK L+TP+++EK
Subjt:  TNAISKLEGKGKLPAQPDHANVSVISLRSGKTLETPSSEEK

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.0e-5472.34Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNLNLRWGNDSQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL
        G  +KV KCGVCGLVGH N+KCP+++E+ N++R+YDPHSNTYN+GWRDN NLRWGND+Q+  QA S+S+NQGTNLED++KALATNT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNLNLRWGNDSQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPAQPDHANVSVISLRSGKTLETPSSEEK
        T AISK++GKGKLPAQ DHANVS ISLRSGK L+TP+++EK
Subjt:  TNAISKLEGKGKLPAQPDHANVSVISLRSGKTLETPSSEEK

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.4e-5674.47Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNLNLRWGNDSQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL
        G   KV KCGVCGLVGHPNDKCP ++E+ N++R+YDPHSNTYN+GWRDNLNLRWGND+Q+  QA S+S+NQGTNLED++KALATNT+SFQ +MKQQ++QL
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNLNLRWGNDSQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPAQPDHANVSVISLRSGKTLETPSSEEK
        T AISK++GKGKLPAQPDHANVS ISLRSGK L+TP+++EK
Subjt:  TNAISKLEGKGKLPAQPDHANVSVISLRSGKTLETPSSEEK

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.9e-5472.34Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNLNLRWGNDSQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL
        G   KV KCGVCGLVGHPNDKCP+++E+ N++R+YDPH NTYN GWRD  NLRWGND Q   QA S+S+NQGTNLED++KAL TNT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNLNLRWGNDSQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPAQPDHANVSVISLRSGKTLETPSSEEK
        T AISK++GKGKLPAQPDHANVS ISLRSGK L+TP+++EK
Subjt:  TNAISKLEGKGKLPAQPDHANVSVISLRSGKTLETPSSEEK

TrEMBL top hitse value%identityAlignment
A0A5A7V0Q7 Retrotransposon gag protein4.1e-5472.34Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNLNLRWGNDSQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL
        G   KV KCGVCGLVGHPNDKC  ++E+ N++R+YDPHSNTYN+GWRDN NLRWGND+Q+  QA S+S+NQGTNLED++KAL TNT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNLNLRWGNDSQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPAQPDHANVSVISLRSGKTLETPSSEEK
        T AISK++GKGKLPAQPD+ANVS ISLRSGK L+TP+++EK
Subjt:  TNAISKLEGKGKLPAQPDHANVSVISLRSGKTLETPSSEEK

A0A5A7VQ60 Retrotransposon gag protein2.4e-5472.34Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNLNLRWGNDSQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL
        G  +KV KCGVCGLVGH N+KCP+++E+ N++R+YDPHSNTYN+GWRDN NLRWGND+Q+  QA S+S+NQGTNLED++KALATNT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNLNLRWGNDSQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPAQPDHANVSVISLRSGKTLETPSSEEK
        T AISK++GKGKLPAQ DHANVS ISLRSGK L+TP+++EK
Subjt:  TNAISKLEGKGKLPAQPDHANVSVISLRSGKTLETPSSEEK

A0A5D3CB46 Retrotransposon gag protein1.2e-5674.47Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNLNLRWGNDSQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL
        G   KV KCGVCGLVGHPNDKCP ++E+ N++R+YDPHSNTYN+GWRDNLNLRWGND+Q+  QA S+S+NQGTNLED++KALATNT+SFQ +MKQQ++QL
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNLNLRWGNDSQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPAQPDHANVSVISLRSGKTLETPSSEEK
        T AISK++GKGKLPAQPDHANVS ISLRSGK L+TP+++EK
Subjt:  TNAISKLEGKGKLPAQPDHANVSVISLRSGKTLETPSSEEK

A0A5D3CFE7 Retrotransposon gag protein1.4e-5472.34Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNLNLRWGNDSQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL
        G   KV KCGVCGLVGHPNDKCP+++E+ N++R+YDPH NTYN GWRD  NLRWGND Q   QA S+S+NQGTNLED++KAL TNT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNLNLRWGNDSQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPAQPDHANVSVISLRSGKTLETPSSEEK
        T AISK++GKGKLPAQPDHANVS ISLRSGK L+TP+++EK
Subjt:  TNAISKLEGKGKLPAQPDHANVSVISLRSGKTLETPSSEEK

E5GBZ4 Retrotransposon gag protein4.1e-5471.63Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNLNLRWGNDSQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL
        G  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDP+ NTYN+GWRDN NLRWGND+Q+  QA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNLNLRWGNDSQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPAQPDHANVSVISLRSGKTLETPSSEEK
        T AISK++GKGKLPAQPD+ANVS ISLRSGK L+TP+++EK
Subjt:  TNAISKLEGKGKLPAQPDHANVSVISLRSGKTLETPSSEEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGTCGAGGAGCGACGGTGGATCTGTAAAAGTTGCAAAATGTGGGGTGTGCGGTCTAGTTGGGCATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCCCATAGTAACACTTACAACGCCGGTTGGAGAGACAACCTTAATCTTAGATGGGGAAACGACAGCCAAAGACCCGCGCAAGCAACTT
CATCTTCAAATAATCAAGGTACTAATTTGGAAGACTTAGTTAAAGCTCTTGCTACTAATACAATCTCTTTTCAGAACGAAATGAAACAACAAATATCTCAACTAACAAAT
GCCATAAGCAAGCTAGAAGGCAAAGGCAAGCTTCCGGCTCAGCCTGATCATGCCAACGTAAGTGTCATTTCGCTTAGAAGCGGTAAGACTCTGGAAACCCCTTCAAGCGA
AGAAAAGAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGTCGAGGAGCGACGGTGGATCTGTAAAAGTTGCAAAATGTGGGGTGTGCGGTCTAGTTGGGCATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCCCATAGTAACACTTACAACGCCGGTTGGAGAGACAACCTTAATCTTAGATGGGGAAACGACAGCCAAAGACCCGCGCAAGCAACTT
CATCTTCAAATAATCAAGGTACTAATTTGGAAGACTTAGTTAAAGCTCTTGCTACTAATACAATCTCTTTTCAGAACGAAATGAAACAACAAATATCTCAACTAACAAAT
GCCATAAGCAAGCTAGAAGGCAAAGGCAAGCTTCCGGCTCAGCCTGATCATGCCAACGTAAGTGTCATTTCGCTTAGAAGCGGTAAGACTCTGGAAACCCCTTCAAGCGA
AGAAAAGAGTTAG
Protein sequenceShow/hide protein sequence
MAPLSRSDGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNLNLRWGNDSQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTN
AISKLEGKGKLPAQPDHANVSVISLRSGKTLETPSSEEKS