; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0006340 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006340
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionprotein LOW PSII ACCUMULATION 2, chloroplastic
Genome locationchr06:6433662..6436121
RNA-Seq ExpressionPI0006340
SyntenyPI0006340
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR038789 - Protein LOW PSII ACCUMULATION 2 like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067684.1 protein LOW PSII ACCUMULATION 2 [Cucumis melo var. makuwa]7.0e-9694.97Show/hide
Query:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKAVKQKGKRQRASII
        MALQILHHSPSSFTKKPYHLPNPSLHFSSK KFII+SQNPSESEKPISKIV DAPIATSSKP TSS QGFGSSSPQSTSTSKSTPK+VKQKGKRQRASII
Subjt:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKAVKQKGKRQRASII

Query:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVG+VDEQVAKEQ RNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

XP_004148133.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus]2.5e-9392.46Show/hide
Query:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKAVKQKGKRQRASII
        MALQILHHSPSSFTK+PYHLPNPSLHFSSK KFII+SQNPSES+KPISK+V DAPIA      TSSPQGFGSSSPQSTSTSKSTPK++KQKGKRQRASII
Subjt:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKAVKQKGKRQRASII

Query:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILV+GIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

XP_008439106.1 PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo]1.7e-9795.98Show/hide
Query:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKAVKQKGKRQRASII
        MALQILHHSPSSFTKKPYHLPNPSLHFSSK KFII+SQNPSESEKPISKIV DAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPK+VKQKGKRQRASII
Subjt:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKAVKQKGKRQRASII

Query:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVG+VDEQVAKEQ RNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

XP_023554492.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo]3.1e-8080.79Show/hide
Query:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKAV----KQKGKRQR
        MALQI+HHSPSSFT+KPYHLP   LHF SKLKFII+SQNPSESEKPISK V DAP+       TSS QGFGS S QST++SKS+PKA     KQKGKRQR
Subjt:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKAV----KQKGKRQR

Query:  ASIIRRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKD
        ASIIRRSPVEKPVFVG+VDE+  KEQG+NESYFLLTWLGLG VILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK+K 
Subjt:  ASIIRRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKD

Query:  EKS
        +KS
Subjt:  EKS

XP_038899637.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida]3.6e-9291.46Show/hide
Query:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKAVKQKGKRQRASII
        MALQILHHSPSSFT+KPYHLPNPSL+F SK KFII SQNPSESEKPISK V DAP+ATSSKPS+SSPQGFGSSS QST+TSKS+PKAVKQKGKRQRASII
Subjt:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKAVKQKGKRQRASII

Query:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVG+VDE+ AKEQ RNESYFLLTWLGLG VILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

TrEMBL top hitse value%identityAlignment
A0A0A0L8E3 Uncharacterized protein1.2e-9392.46Show/hide
Query:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKAVKQKGKRQRASII
        MALQILHHSPSSFTK+PYHLPNPSLHFSSK KFII+SQNPSES+KPISK+V DAPIA      TSSPQGFGSSSPQSTSTSKSTPK++KQKGKRQRASII
Subjt:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKAVKQKGKRQRASII

Query:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILV+GIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

A0A1S3AXX6 protein LOW PSII ACCUMULATION 2, chloroplastic8.0e-9895.98Show/hide
Query:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKAVKQKGKRQRASII
        MALQILHHSPSSFTKKPYHLPNPSLHFSSK KFII+SQNPSESEKPISKIV DAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPK+VKQKGKRQRASII
Subjt:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKAVKQKGKRQRASII

Query:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVG+VDEQVAKEQ RNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

A0A5A7VJY0 Protein LOW PSII ACCUMULATION 23.4e-9694.97Show/hide
Query:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKAVKQKGKRQRASII
        MALQILHHSPSSFTKKPYHLPNPSLHFSSK KFII+SQNPSESEKPISKIV DAPIATSSKP TSS QGFGSSSPQSTSTSKSTPK+VKQKGKRQRASII
Subjt:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKAVKQKGKRQRASII

Query:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVG+VDEQVAKEQ RNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

A0A6J1FNA7 protein LOW PSII ACCUMULATION 2, chloroplastic2.6e-8080.79Show/hide
Query:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKAV----KQKGKRQR
        MALQI+HHSPSSFT+KPYHLP   LHF SKLKFII+SQNPSESEKPISK V DAP+       TSS QGFGS S QST++SKS+PKA     KQKGKRQR
Subjt:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKAV----KQKGKRQR

Query:  ASIIRRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKD
        ASIIRRSPVEKPVFVG+VDE+  KEQG+NESYFLLTWLGLG VILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK+K 
Subjt:  ASIIRRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKD

Query:  EKS
        +KS
Subjt:  EKS

A0A6J1IBT8 protein LOW PSII ACCUMULATION 2, chloroplastic2.1e-7778.82Show/hide
Query:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKAV----KQKGKRQR
        MALQI+HHSPSSFT+KPYHLP   L+F SK KFII+SQ+PSESEKPISK V DA +       TSS QGFGS S QST++SKS+PKA     KQKGKRQR
Subjt:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKAV----KQKGKRQR

Query:  ASIIRRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKD
        ASIIRRSPVEKPVFVG+VDE+  KEQG+NESYFLLTWLGLG VILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK+K 
Subjt:  ASIIRRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKD

Query:  EKS
        +KS
Subjt:  EKS

SwissProt top hitse value%identityAlignment
F4KDA6 Protein LPA21.1e-4053.5Show/hide
Query:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATS-SKPSTSSPQGFGSSSPQSTSTSK-STPKAVKQKGKRQRAS
        MALQI  HSP SF+ +PYHL       +   +F I+ QN        S+I  D     S SK S+SS  GFGS +  S+   K S   +  +KGK +R  
Subjt:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATS-SKPSTSSPQGFGSSSPQSTSTSK-STPKAVKQKGKRQRAS

Query:  IIRRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK
        + RR+PVEKPVF+ +     A+EQ +NE+ FLLTWLGLG+VIL+EGI+LAASGFLPEE DK FVKY+YP FTP+V LFVAGT AYGVLKY+QNEK+K ++
Subjt:  IIRRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK

Arabidopsis top hitse value%identityAlignment
AT5G51545.1 low psii accumulation28.1e-4253.5Show/hide
Query:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATS-SKPSTSSPQGFGSSSPQSTSTSK-STPKAVKQKGKRQRAS
        MALQI  HSP SF+ +PYHL       +   +F I+ QN        S+I  D     S SK S+SS  GFGS +  S+   K S   +  +KGK +R  
Subjt:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATS-SKPSTSSPQGFGSSSPQSTSTSK-STPKAVKQKGKRQRAS

Query:  IIRRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK
        + RR+PVEKPVF+ +     A+EQ +NE+ FLLTWLGLG+VIL+EGI+LAASGFLPEE DK FVKY+YP FTP+V LFVAGT AYGVLKY+QNEK+K ++
Subjt:  IIRRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCTACAAATACTCCATCATTCTCCCTCTTCTTTCACCAAAAAACCCTATCATCTTCCCAACCCATCTCTCCATTTCTCTTCTAAACTTAAATTCATCATCAGATC
TCAGAACCCATCTGAATCTGAGAAACCCATTTCGAAAATTGTTGGTGATGCTCCAATTGCGACTTCATCCAAGCCATCTACCTCATCGCCTCAAGGTTTCGGCTCTTCAT
CGCCTCAATCGACGTCCACGAGCAAATCAACCCCAAAGGCTGTGAAGCAGAAGGGTAAGCGTCAAAGGGCATCCATTATTCGGCGCTCTCCCGTGGAGAAACCGGTGTTT
GTTGGACAAGTAGATGAACAGGTTGCTAAGGAACAGGGCAGGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGTTGTGATTCTCGTCGAGGGGATTGTGCT
TGCGGCATCTGGTTTCTTACCGGAAGAGTGGGACAAGTTCTTCGTCAAATATTTGTATCCTTCCTTCACACCAACCGTCTCTCTGTTTGTTGCTGGAACTGTTGCATACG
GAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAGAAATCATAA
mRNA sequenceShow/hide mRNA sequence
CCTTAACCAAATAAACTGAAAATGGCGCTACAAATACTCCATCATTCTCCCTCTTCTTTCACCAAAAAACCCTATCATCTTCCCAACCCATCTCTCCATTTCTCTTCTAA
ACTTAAATTCATCATCAGATCTCAGAACCCATCTGAATCTGAGAAACCCATTTCGAAAATTGTTGGTGATGCTCCAATTGCGACTTCATCCAAGCCATCTACCTCATCGC
CTCAAGGTTTCGGCTCTTCATCGCCTCAATCGACGTCCACGAGCAAATCAACCCCAAAGGCTGTGAAGCAGAAGGGTAAGCGTCAAAGGGCATCCATTATTCGGCGCTCT
CCCGTGGAGAAACCGGTGTTTGTTGGACAAGTAGATGAACAGGTTGCTAAGGAACAGGGCAGGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGTTGTGAT
TCTCGTCGAGGGGATTGTGCTTGCGGCATCTGGTTTCTTACCGGAAGAGTGGGACAAGTTCTTCGTCAAATATTTGTATCCTTCCTTCACACCAACCGTCTCTCTGTTTG
TTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAGAAATCATAATTTAATCCTTTTTGCTTGATGCTTTGTATTTGGTGTGAA
GACCTGAAAGATCCCAAGTGCCTATAGATCTTGTTTATATAAACTGTCTCATTTTCTGAGAAACTGAGAGATGAAAATTTTTTGAGCTCGAAAGCAAATGAGATGTTGAA
TCCTAGGAAACTTCTTGCCGTCATTTTATTATTATTATTATTATTTGGGCTTTAGTTTCATTGACAATAATCCTCTGATAGATCACTTCTGTAATTATCTTAAGATTTTG
AGAATAACCTATTATATAGATCCCTTAAGTAATTCAAGGTGTTAT
Protein sequenceShow/hide protein sequence
MALQILHHSPSSFTKKPYHLPNPSLHFSSKLKFIIRSQNPSESEKPISKIVGDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKAVKQKGKRQRASIIRRSPVEKPVF
VGQVDEQVAKEQGRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS