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PI0006346 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006346
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr06:15167733..15168343
RNA-Seq ExpressionPI0006346
SyntenyPI0006346
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]6.2e-6074.17Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNHNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDN NLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNHNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILQTPPSEEK
         EMKQQM+QLT AISK++GKGKLP QPD+ANVSAISLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILQTPPSEEK

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-5973.51Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNHNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDN NLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNHNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILQTPPSEEK
         EMKQQM+QLT AISK++GKGKL  Q ++ANVSA+SLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILQTPPSEEK

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.1e-6074.83Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNHNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KCGVCGL+GHPNDKCP ++E+ N++R+YDPH NTYN+GWRDN NLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNHNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILQTPPSEEK
         +MKQQM+QLT AISK++GKGKLP QPDHANVSAISLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILQTPPSEEK

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-6074.83Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNHNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN GWRD  NLRWGND Q   QA S+S+NQG+NLED++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNHNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILQTPPSEEK
         EMKQQM+QLT AISK++GKGKLP QPDHANVSAISLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILQTPPSEEK

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]3.1e-5972.85Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNHNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDN NLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNHNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILQTPPSEEK
         +MKQQM+QLT  ISK++GKGKLP QPDH NVSAISLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILQTPPSEEK

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032911.5e-5972.85Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNHNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDN NLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNHNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILQTPPSEEK
         +MKQQM+QLT  ISK++GKGKLP QPDH NVSAISLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILQTPPSEEK

A0A5D3CB46 Retrotransposon gag protein1.0e-6074.83Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNHNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KCGVCGL+GHPNDKCP ++E+ N++R+YDPH NTYN+GWRDN NLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNHNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILQTPPSEEK
         +MKQQM+QLT AISK++GKGKLP QPDHANVSAISLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILQTPPSEEK

A0A5D3CFE7 Retrotransposon gag protein6.1e-6174.83Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNHNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN GWRD  NLRWGND Q   QA S+S+NQG+NLED++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNHNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILQTPPSEEK
         EMKQQM+QLT AISK++GKGKLP QPDHANVSAISLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILQTPPSEEK

A0A5D3CRR8 Retrotransposon gag protein6.7e-6073.51Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNHNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDN NLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNHNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILQTPPSEEK
         EMKQQM+QLT AISK++GKGKL  Q ++ANVSA+SLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILQTPPSEEK

E5GBZ4 Retrotransposon gag protein3.0e-6074.17Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNHNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDN NLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNHNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILQTPPSEEK
         EMKQQM+QLT AISK++GKGKLP QPD+ANVSAISLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILQTPPSEEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACATTGCTTACTTCTTTTGTACAAGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCATAACCTTAGATGGGGAAATGATGCCCAACGACCCGCACAAG
CAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTAGTAAAAGCTCTTGCTACCAACACAATTTCCTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTA
ACCAACGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGGTCAACCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATCCTGCAAACCCCTCC
AAGCGAAGAAAAGATTGGCCCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTACATTGCTTACTTCTTTTGTACAAGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCATAACCTTAGATGGGGAAATGATGCCCAACGACCCGCACAAG
CAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTAGTAAAAGCTCTTGCTACCAACACAATTTCCTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTA
ACCAACGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGGTCAACCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATCCTGCAAACCCCTCC
AAGCGAAGAAAAGATTGGCCCCTGA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNHNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
TNAISKLEGKGKLPGQPDHANVSAISLRSGKILQTPPSEEKIGP