CuGenDBv2

Gene ID	PI0006351
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr08:7260340..7260840
RNA-Seq Expression	PI0006351
Synteny	PI0006351
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]

5.0e-63

75.31

Show/hide

Query:  MDAQDIASLLNEFITYQRQLLLTLELLMNDNKRITQIPSDTRHRIRQLAYFCMIHESDLVCRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMF
        MD  ++AS++N FI  QRQLLL LELL ND KRIT IP +TRHRIRQLAYF MIH SDLVCRQS RMDRRCF ILCH LRT AGL S ++VDVEEMV MF
Subjt:  MDAQDIASLLNEFITYQRQLLLTLELLMNDNKRITQIPSDTRHRIRQLAYFCMIHESDLVCRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMF

Query:  LHVLAHDMKNRVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLKKPQQIKNGCTDTRWRWFE
        LH+LAHD+KNRVIQ+EF+ SGETI +HFN+VLLAV+RLHDELLKKPQ + N CTD RWRWFE
Subjt:  LHVLAHDMKNRVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLKKPQQIKNGCTDTRWRWFE

KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]

1.4e-62

74.69

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Query:  MDAQDIASLLNEFITYQRQLLLTLELLMNDNKRITQIPSDTRHRIRQLAYFCMIHESDLVCRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMF
        MD  ++AS++N FI  QRQLLL LELL ND KRIT IP +TRHRIRQLAYF MIH SDLVCRQS RMDRRCF ILCH LRT AGL S ++VDVEEMV MF
Subjt:  MDAQDIASLLNEFITYQRQLLLTLELLMNDNKRITQIPSDTRHRIRQLAYFCMIHESDLVCRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMF

Query:  LHVLAHDMKNRVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLKKPQQIKNGCTDTRWRWFE
        LH+LAHD+KNRVIQ+EF+ SGETI +HFN+VLLAV+RLH+ELLKKPQ + N CTD RWRWFE
Subjt:  LHVLAHDMKNRVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLKKPQQIKNGCTDTRWRWFE

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]

5.0e-63

75.31

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Query:  MDAQDIASLLNEFITYQRQLLLTLELLMNDNKRITQIPSDTRHRIRQLAYFCMIHESDLVCRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMF
        MD  ++AS++N FI  QRQLLL LELL ND KRIT IP +TRHRIRQLAYF MIH SDLVCRQS RMDRRCF ILCH LRT AGL S ++VDVEEMV MF
Subjt:  MDAQDIASLLNEFITYQRQLLLTLELLMNDNKRITQIPSDTRHRIRQLAYFCMIHESDLVCRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMF

Query:  LHVLAHDMKNRVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLKKPQQIKNGCTDTRWRWFE
        LH+LAHD+KNRVIQ+EF+ SGETI +HFN+VLLAV+RLHDELLKKPQ + N CTD RWRWFE
Subjt:  LHVLAHDMKNRVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLKKPQQIKNGCTDTRWRWFE

KAA0047510.1 retrotransposon protein [Cucumis melo var. makuwa]

2.5e-62

74.69

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Query:  MDAQDIASLLNEFITYQRQLLLTLELLMNDNKRITQIPSDTRHRIRQLAYFCMIHESDLVCRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMF
        MD Q++AS++N FI  QRQLLL LELL ND KRIT IP +TRHRIRQLAYF MIH SDLVCR+S RMDRRCF ILCH LRT AGL S ++VDVEEMV MF
Subjt:  MDAQDIASLLNEFITYQRQLLLTLELLMNDNKRITQIPSDTRHRIRQLAYFCMIHESDLVCRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMF

Query:  LHVLAHDMKNRVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLKKPQQIKNGCTDTRWRWFE
        LH+LAHD+KNRVIQ+EF+ SGETI  HFN+VLLAV+RLH+ELLKKPQ + N CTD RWRWFE
Subjt:  LHVLAHDMKNRVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLKKPQQIKNGCTDTRWRWFE

KAA0065736.1 retrotransposon protein [Cucumis melo var. makuwa]

3.4e-64

75.31

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Query:  MDAQDIASLLNEFITYQRQLLLTLELLMNDNKRITQIPSDTRHRIRQLAYFCMIHESDLVCRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMF
        MD  ++AS++N FI  QRQLLL LELL ND KRIT IP +TRHRIRQLAYF MIHESDLVCRQS RMDRRCF ILCH LRT AGL S ++VDVEEMV MF
Subjt:  MDAQDIASLLNEFITYQRQLLLTLELLMNDNKRITQIPSDTRHRIRQLAYFCMIHESDLVCRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMF

Query:  LHVLAHDMKNRVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLKKPQQIKNGCTDTRWRWFE
        LH+LAHD+KNRVIQ+EF+ SGETIF+HFN++ LAV+RLHDELLKKPQ + N CTD RWRWFE
Subjt:  LHVLAHDMKNRVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLKKPQQIKNGCTDTRWRWFE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SWD8 Retrotransposon protein

2.4e-63

75.31

Show/hide

Query:  MDAQDIASLLNEFITYQRQLLLTLELLMNDNKRITQIPSDTRHRIRQLAYFCMIHESDLVCRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMF
        MD  ++AS++N FI  QRQLLL LELL ND KRIT IP +TRHRIRQLAYF MIH SDLVCRQS RMDRRCF ILCH LRT AGL S ++VDVEEMV MF
Subjt:  MDAQDIASLLNEFITYQRQLLLTLELLMNDNKRITQIPSDTRHRIRQLAYFCMIHESDLVCRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMF

Query:  LHVLAHDMKNRVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLKKPQQIKNGCTDTRWRWFE
        LH+LAHD+KNRVIQ+EF+ SGETI +HFN+VLLAV+RLHDELLKKPQ + N CTD RWRWFE
Subjt:  LHVLAHDMKNRVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLKKPQQIKNGCTDTRWRWFE

A0A5A7TWH8 Retrotransposon protein

1.2e-62

74.69

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Query:  MDAQDIASLLNEFITYQRQLLLTLELLMNDNKRITQIPSDTRHRIRQLAYFCMIHESDLVCRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMF
        MD Q++AS++N FI  QRQLLL LELL ND KRIT IP +TRHRIRQLAYF MIH SDLVCR+S RMDRRCF ILCH LRT AGL S ++VDVEEMV MF
Subjt:  MDAQDIASLLNEFITYQRQLLLTLELLMNDNKRITQIPSDTRHRIRQLAYFCMIHESDLVCRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMF

Query:  LHVLAHDMKNRVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLKKPQQIKNGCTDTRWRWFE
        LH+LAHD+KNRVIQ+EF+ SGETI  HFN+VLLAV+RLH+ELLKKPQ + N CTD RWRWFE
Subjt:  LHVLAHDMKNRVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLKKPQQIKNGCTDTRWRWFE

A0A5A7TXW1 Retrotransposon protein

2.4e-63

75.31

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Query:  MDAQDIASLLNEFITYQRQLLLTLELLMNDNKRITQIPSDTRHRIRQLAYFCMIHESDLVCRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMF
        MD  ++AS++N FI  QRQLLL LELL ND KRIT IP +TRHRIRQLAYF MIH SDLVCRQS RMDRRCF ILCH LRT AGL S ++VDVEEMV MF
Subjt:  MDAQDIASLLNEFITYQRQLLLTLELLMNDNKRITQIPSDTRHRIRQLAYFCMIHESDLVCRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMF

Query:  LHVLAHDMKNRVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLKKPQQIKNGCTDTRWRWFE
        LH+LAHD+KNRVIQ+EF+ SGETI +HFN+VLLAV+RLHDELLKKPQ + N CTD RWRWFE
Subjt:  LHVLAHDMKNRVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLKKPQQIKNGCTDTRWRWFE

A0A5A7VHB0 Retrotransposon protein

1.7e-64

75.31

Show/hide

Query:  MDAQDIASLLNEFITYQRQLLLTLELLMNDNKRITQIPSDTRHRIRQLAYFCMIHESDLVCRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMF
        MD  ++AS++N FI  QRQLLL LELL ND KRIT IP +TRHRIRQLAYF MIHESDLVCRQS RMDRRCF ILCH LRT AGL S ++VDVEEMV MF
Subjt:  MDAQDIASLLNEFITYQRQLLLTLELLMNDNKRITQIPSDTRHRIRQLAYFCMIHESDLVCRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMF

Query:  LHVLAHDMKNRVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLKKPQQIKNGCTDTRWRWFE
        LH+LAHD+KNRVIQ+EF+ SGETIF+HFN++ LAV+RLHDELLKKPQ + N CTD RWRWFE
Subjt:  LHVLAHDMKNRVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLKKPQQIKNGCTDTRWRWFE

A0A5D3BDX0 Retrotransposon protein

7.0e-63

74.69

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Query:  MDAQDIASLLNEFITYQRQLLLTLELLMNDNKRITQIPSDTRHRIRQLAYFCMIHESDLVCRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMF
        MD  ++AS++N FI  QRQLLL LELL ND KRIT IP +TRHRIRQLAYF MIH SDLVCRQS RMDRRCF ILCH LRT AGL S ++VDVEEMV MF
Subjt:  MDAQDIASLLNEFITYQRQLLLTLELLMNDNKRITQIPSDTRHRIRQLAYFCMIHESDLVCRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMF

Query:  LHVLAHDMKNRVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLKKPQQIKNGCTDTRWRWFE
        LH+LAHD+KNRVIQ+EF+ SGETI +HFN+VLLAV+RLH+ELLKKPQ + N CTD RWRWFE
Subjt:  LHVLAHDMKNRVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLKKPQQIKNGCTDTRWRWFE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G28730.1 unknown protein

9.2e-07

32.99

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Query:  IHESDLVCRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMFLHVLAHDMKNRVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLKKPQQIK
        I+ +++ C+  IRM    FT LC  L    GL+S   + ++E V +FL + A +   R I   F  + ETI++ F+ VL A+ RL  E + +P++++
Subjt:  IHESDLVCRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMFLHVLAHDMKNRVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLKKPQQIK

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

2.0e-09

34.52

Show/hide

Query:  CRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMFLHVLAHDMKNRVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLK
        C ++ RMD+  F  LC  L+T   L     + +E  + +FL ++ H+++ R +Q+ F  SGETI +HFN VL AV+ +  +  +
Subjt:  CRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMFLHVLAHDMKNRVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLK

Sequences

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CDS sequence

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ATGGATGCACAAGACATTGCATCCCTACTCAACGAGTTCATAACATACCAACGTCAGTTACTACTAACGTTGGAGTTGTTAATGAACGACAACAAGAGGATAACGCAAAT
ACCCTCCGACACTAGGCATAGAATTAGGCAGTTAGCTTACTTTTGCATGATCCATGAGTCTGATCTCGTATGTCGTCAAAGTATAAGAATGGACAGAAGATGCTTCACCA
TTCTATGCCACCAACTTAGGACCACCGCTGGATTAGAGTCGATGAAAATTGTCGATGTCGAGGAGATGGTCATAATGTTCCTCCACGTACTGGCGCACGACATGAAGAAT
CGAGTGATTCAAAAGGAGTTCGTGGGGTCTGGTGAGACTATTTTCCAGCATTTCAACTTAGTCTTGTTGGCTGTGTTACGCCTGCATGACGAGTTGTTGAAAAAACCACA
ACAAATTAAAAATGGTTGCACAGATACTCGATGGAGGTGGTTTGAGGTTCACATTTTCTAA

mRNA sequence

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Protein sequence

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MDAQDIASLLNEFITYQRQLLLTLELLMNDNKRITQIPSDTRHRIRQLAYFCMIHESDLVCRQSIRMDRRCFTILCHQLRTTAGLESMKIVDVEEMVIMFLHVLAHDMKN
RVIQKEFVGSGETIFQHFNLVLLAVLRLHDELLKKPQQIKNGCTDTRWRWFEVHIF

PI0006351 (gene) of Melon (PI 482460) v1 genome