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PI0006406 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006406
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr05:15583253..15584019
RNA-Seq ExpressionPI0006406
SyntenyPI0006406
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035413.1 retrotransposon protein [Cucumis melo var. makuwa]3.9e-4560Show/hide
Query:  NDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRSNVFGGYEGFPVN---DMEILSMYSQGLDMSPSEVMGTRLD
        NDE KCI+ EK ++DNWVKSHPT KGLLNKSFPHYD+L Y FG+DRATGG AE+F D+  N   GYE F V+   D +   MYSQGL+MSP E+MG R  
Subjt:  NDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRSNVFGGYEGFPVN---DMEILSMYSQGLDMSPSEVMGTRLD

Query:  RSADGRTGSSGSKRKCGGQTLETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVV
        + ++GR  SSGSKRK  GQ  ++  ++R A+EY N+QL  IAEW  +QRQDAS TR EVV
Subjt:  RSADGRTGSSGSKRKCGGQTLETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVV

KAA0047075.1 retrotransposon protein [Cucumis melo var. makuwa]5.8e-4156.52Show/hide
Query:  NDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRSNVFGGYEGFPVN---DMEILSMYSQGLDMSPSEVMGTRLD
        NDE KCI+VEK L+D+WVKSHP  KGLLNKSF HYD+L Y FG+DRATGG AE+F D+ SN   GY+ F  +   D     MYS GL+MSP ++M TR  
Subjt:  NDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRSNVFGGYEGFPVN---DMEILSMYSQGLDMSPSEVMGTRLD

Query:  RSADGRTGSSGSKRKCGGQTLETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR
        R ++ R  SSGSKRK  G   ++  I+  A+EY N+QL  IAEW  +QRQDAS TR E+VR
Subjt:  RSADGRTGSSGSKRKCGGQTLETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR

KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-4157.32Show/hide
Query:  KCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRSNVFGGYEGF---PVNDMEILSMYSQGLDMSPSEVMGTRLDRSAD
        KCII EK ++D+WVKSHP  KGLLNKSF HYD+L Y FG+DRATGG AE+F D+ SN   GY+ F    V+D + L MYS GL+MSP ++M TR  R ++
Subjt:  KCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRSNVFGGYEGF---PVNDMEILSMYSQGLDMSPSEVMGTRLDRSAD

Query:  GRTGSSGSKRKCGGQTLETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR
         R  SSGSKRK  G   ++  I+R AMEY N+QL  IAEW  +QRQDA+ TR E+VR
Subjt:  GRTGSSGSKRKCGGQTLETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR

KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]8.6e-4558.39Show/hide
Query:  NDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRSNVFGGYEGFPVN---DMEILSMYSQGLDMSPSEVMGTRLD
        NDE KCI+ EK ++D+WV+SHP  KGLLNKSFPHYD+L Y F +D ATGG AE+F DV SN   GY+ F  N   D +   MYS+GL+MSP E+MGTR  
Subjt:  NDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRSNVFGGYEGFPVN---DMEILSMYSQGLDMSPSEVMGTRLD

Query:  RSADGRTGSSGSKRKCGGQTLETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR
        R ++GR  SSGSK+K GG T+++  I+R A+EY N+QL  IAEW  +QRQDA+ TR EVVR
Subjt:  RSADGRTGSSGSKRKCGGQTLETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR

KAA0061395.1 retrotransposon protein [Cucumis melo var. makuwa]8.0e-4359.26Show/hide
Query:  NDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRSNVFGGYEGFPV----NDMEILSMYSQGLDMSPSEVMGTRL
        N ELKCIIV+K++++NW  SHP   GLLN+SFPHY++LCY FGRD ATGG  ETFVDV SNV G YEG       N++EI +MYSQGLDMSP+++MGTR 
Subjt:  NDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRSNVFGGYEGFPV----NDMEILSMYSQGLDMSPSEVMGTRL

Query:  DRSADGRTGSSGSKRKCGGQTLETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR
         R++  R  SS  KRK GGQ++E  K+I + MEY NDQL    + L +Q QDASATR EVV+
Subjt:  DRSADGRTGSSGSKRKCGGQTLETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR

TrEMBL top hitse value%identityAlignment
A0A5A7SXX8 Retrotransposon protein1.9e-4560Show/hide
Query:  NDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRSNVFGGYEGFPVN---DMEILSMYSQGLDMSPSEVMGTRLD
        NDE KCI+ EK ++DNWVKSHPT KGLLNKSFPHYD+L Y FG+DRATGG AE+F D+  N   GYE F V+   D +   MYSQGL+MSP E+MG R  
Subjt:  NDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRSNVFGGYEGFPVN---DMEILSMYSQGLDMSPSEVMGTRLD

Query:  RSADGRTGSSGSKRKCGGQTLETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVV
        + ++GR  SSGSKRK  GQ  ++  ++R A+EY N+QL  IAEW  +QRQDAS TR EVV
Subjt:  RSADGRTGSSGSKRKCGGQTLETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVV

A0A5A7TYQ6 Retrotransposon protein9.6e-4257.32Show/hide
Query:  KCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRSNVFGGYEGF---PVNDMEILSMYSQGLDMSPSEVMGTRLDRSAD
        KCII EK ++D+WVKSHP  KGLLNKSF HYD+L Y FG+DRATGG AE+F D+ SN   GY+ F    V+D + L MYS GL+MSP ++M TR  R ++
Subjt:  KCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRSNVFGGYEGF---PVNDMEILSMYSQGLDMSPSEVMGTRLDRSAD

Query:  GRTGSSGSKRKCGGQTLETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR
         R  SSGSKRK  G   ++  I+R AMEY N+QL  IAEW  +QRQDA+ TR E+VR
Subjt:  GRTGSSGSKRKCGGQTLETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR

A0A5A7TZA5 Retrotransposon protein4.2e-4558.39Show/hide
Query:  NDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRSNVFGGYEGFPVN---DMEILSMYSQGLDMSPSEVMGTRLD
        NDE KCI+ EK ++D+WV+SHP  KGLLNKSFPHYD+L Y F +D ATGG AE+F DV SN   GY+ F  N   D +   MYS+GL+MSP E+MGTR  
Subjt:  NDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRSNVFGGYEGFPVN---DMEILSMYSQGLDMSPSEVMGTRLD

Query:  RSADGRTGSSGSKRKCGGQTLETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR
        R ++GR  SSGSK+K GG T+++  I+R A+EY N+QL  IAEW  +QRQDA+ TR EVVR
Subjt:  RSADGRTGSSGSKRKCGGQTLETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR

A0A5D3C1M0 Retrotransposon protein2.8e-4156.52Show/hide
Query:  NDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRSNVFGGYEGFPVN---DMEILSMYSQGLDMSPSEVMGTRLD
        NDE KCI+VEK L+D+WVKSHP  KGLLNKSF HYD+L Y FG+DRATGG AE+F D+ SN   GY+    +   D +   MYS GL+MSP ++M TR  
Subjt:  NDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRSNVFGGYEGFPVN---DMEILSMYSQGLDMSPSEVMGTRLD

Query:  RSADGRTGSSGSKRKCGGQTLETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR
        R ++ R  SSGSKRK  G   ++  I+R A+EY N+QL  IAEW  +QRQDAS TR E+VR
Subjt:  RSADGRTGSSGSKRKCGGQTLETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR

A0A5D3CX17 Retrotransposon protein3.9e-4359.26Show/hide
Query:  NDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRSNVFGGYEGFPV----NDMEILSMYSQGLDMSPSEVMGTRL
        N ELKCIIV+K++++NW  SHP   GLLN+SFPHY++LCY FGRD ATGG  ETFVDV SNV G YEG       N++EI +MYSQGLDMSP+++MGTR 
Subjt:  NDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRSNVFGGYEGFPV----NDMEILSMYSQGLDMSPSEVMGTRL

Query:  DRSADGRTGSSGSKRKCGGQTLETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR
         R++  R  SS  KRK GGQ++E  K+I + MEY NDQL    + L +Q QDASATR EVV+
Subjt:  DRSADGRTGSSGSKRKCGGQTLETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTAATAGAGTTGGTATCCGCCAGCGACTAGAGGTCGGGCAACAGGACTGGGTTCGATTGAACGATGAGCTCAAATGCATCATTGTCGAGAAGAACTTGTACGACAA
TTGGGTGAAGAGTCATCCAACCGTGAAGGGCCTCCTAAACAAATCCTTTCCCCATTACGACGACTTATGCTACACATTTGGAAGAGATCGTGCAACAGGAGGGCATGCTG
AAACCTTTGTCGATGTTAGGTCGAACGTGTTCGGAGGGTATGAGGGATTTCCTGTCAACGACATGGAGATCCTCTCGATGTACAGTCAGGGACTAGACATGTCACCTAGT
GAAGTCATGGGCACACGACTCGATCGCTCAGCTGATGGTAGAACTGGTTCGAGTGGGTCGAAGAGGAAGTGTGGAGGCCAGACGTTAGAAACGACGAAAATCATTCGCAA
TGCGATGGAGTATGCGAATGACCAACTGAAGGTCATTGCAGAATGGCTGAATGTACAACGCCAAGATGCAAGCGCTACACGTGCGGAGGTCGTTAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTAATAGAGTTGGTATCCGCCAGCGACTAGAGGTCGGGCAACAGGACTGGGTTCGATTGAACGATGAGCTCAAATGCATCATTGTCGAGAAGAACTTGTACGACAA
TTGGGTGAAGAGTCATCCAACCGTGAAGGGCCTCCTAAACAAATCCTTTCCCCATTACGACGACTTATGCTACACATTTGGAAGAGATCGTGCAACAGGAGGGCATGCTG
AAACCTTTGTCGATGTTAGGTCGAACGTGTTCGGAGGGTATGAGGGATTTCCTGTCAACGACATGGAGATCCTCTCGATGTACAGTCAGGGACTAGACATGTCACCTAGT
GAAGTCATGGGCACACGACTCGATCGCTCAGCTGATGGTAGAACTGGTTCGAGTGGGTCGAAGAGGAAGTGTGGAGGCCAGACGTTAGAAACGACGAAAATCATTCGCAA
TGCGATGGAGTATGCGAATGACCAACTGAAGGTCATTGCAGAATGGCTGAATGTACAACGCCAAGATGCAAGCGCTACACGTGCGGAGGTCGTTAGGTAG
Protein sequenceShow/hide protein sequence
MSNRVGIRQRLEVGQQDWVRLNDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRSNVFGGYEGFPVNDMEILSMYSQGLDMSPS
EVMGTRLDRSADGRTGSSGSKRKCGGQTLETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR