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PI0006409 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006409
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr09:8301541..8302254
RNA-Seq ExpressionPI0006409
SyntenyPI0006409
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026071.1 uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]7.1e-2837.86Show/hide
Query:  MRDRGKGKCVQPMQNSFGSLSDLSEGENWALAL---------------------------------------------RFRGAWGYTCSYNSSGVGQIWV
        +RDRGK   V  M NSFGSL ++ + + WAL++                                             RF  +W Y+CSY++SGVG+IWV
Subjt:  MRDRGKGKCVQPMQNSFGSLSDLSEGENWALAL---------------------------------------------RFRGAWGYTCSYNSSGVGQIWV

Query:  MWKRDRFAFTPNVVDEH-------------------------NVNRRGLWRRLADITSGWSIPGVVMGDFNAIRVYSDG--ENLVPGDMEEFDLAIREAD
        MWK++RF+F+ +V+DE                          N+ RR LW RL +ITS WS PGVVM DFNAIRV+S+    + + G+ME+F+LAIR+AD
Subjt:  MWKRDRFAFTPNVVDEH-------------------------NVNRRGLWRRLADITSGWSIPGVVMGDFNAIRVYSDG--ENLVPGDMEEFDLAIREAD

Query:  LVESSI
        LVE S+
Subjt:  LVESSI

KAA0049770.1 hypothetical protein E6C27_scaffold76G001230 [Cucumis melo var. makuwa]6.5e-2948.91Show/hide
Query:  EGENWALALRFRGAWGYTCSYNSSGVGQIWVMWKRDRFAFTPNVVDEH-------------------------NVNRRGLWRRLADITSGWSIPGVVMGD
        EG   +++ RF  +W Y+CSY++SGVG+IWVMWK++RF+F+ +V+DE                          N+ RR LWRRL +ITS WS PGVVMGD
Subjt:  EGENWALALRFRGAWGYTCSYNSSGVGQIWVMWKRDRFAFTPNVVDEH-------------------------NVNRRGLWRRLADITSGWSIPGVVMGD

Query:  FNAIRVYSD--GENLVPGDMEEFDLAIREADLVESSI
        FNAIRV+S+  G + + G+ME+FDLAIR+ADL+E S+
Subjt:  FNAIRVYSD--GENLVPGDMEEFDLAIREADLVESSI

KAA0062319.1 hypothetical protein E6C27_scaffold154G00700 [Cucumis melo var. makuwa]7.1e-2848.18Show/hide
Query:  EGENWALALRFRGAWGYTCSYNSSGVGQIWVMWKRDRFAFTPNVVDEH-------------------------NVNRRGLWRRLADITSGWSIPGVVMGD
        EG   +++ +F  +W Y+CSY++SGVG+IWVMWK++RF+F+ +V+DE                          N+ RR LWRRL +ITS WS PGVVMGD
Subjt:  EGENWALALRFRGAWGYTCSYNSSGVGQIWVMWKRDRFAFTPNVVDEH-------------------------NVNRRGLWRRLADITSGWSIPGVVMGD

Query:  FNAIRVYSD--GENLVPGDMEEFDLAIREADLVESSI
        FNAIRV+S+  G + + G+ME+FDLAI +ADLVE S+
Subjt:  FNAIRVYSD--GENLVPGDMEEFDLAIREADLVESSI

TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]7.1e-2837.86Show/hide
Query:  MRDRGKGKCVQPMQNSFGSLSDLSEGENWALAL---------------------------------------------RFRGAWGYTCSYNSSGVGQIWV
        +RDRGK   V  M NSFGSL ++ + + WAL++                                             RF  +W Y+CSY++SGVG+IWV
Subjt:  MRDRGKGKCVQPMQNSFGSLSDLSEGENWALAL---------------------------------------------RFRGAWGYTCSYNSSGVGQIWV

Query:  MWKRDRFAFTPNVVDEH-------------------------NVNRRGLWRRLADITSGWSIPGVVMGDFNAIRVYSDG--ENLVPGDMEEFDLAIREAD
        MWK++RF+F+ +V+DE                          N+ RR LW RL +ITS WS PGVVM DFNAIRV+S+    + + G+ME+F+LAIR+AD
Subjt:  MWKRDRFAFTPNVVDEH-------------------------NVNRRGLWRRLADITSGWSIPGVVMGDFNAIRVYSDG--ENLVPGDMEEFDLAIREAD

Query:  LVESSI
        LVE S+
Subjt:  LVESSI

TYK28312.1 uncharacterized protein E5676_scaffold600G001370 [Cucumis melo var. makuwa]4.6e-2750.78Show/hide
Query:  RFRGAWGYTCSYNSSGVGQIWVMWKRDRFAFTPNVVDEH-------------------------NVNRRGLWRRLADITSGWSIPGVVMGDFNAIRVYSD
        RF  +W Y+CSY++SGVGQIWVMWK++ F+F+  VVDE                          N+ RR LW RL +IT GWS PG+VMGDFNAIRV+S+
Subjt:  RFRGAWGYTCSYNSSGVGQIWVMWKRDRFAFTPNVVDEH-------------------------NVNRRGLWRRLADITSGWSIPGVVMGDFNAIRVYSD

Query:  --GENLVPGDMEEFDLAIREADLVESSI
          G + + G+ME+FDLAIR+ADLVE S+
Subjt:  --GENLVPGDMEEFDLAIREADLVESSI

TrEMBL top hitse value%identityAlignment
A0A5A7SPE5 Reverse transcriptase domain-containing protein3.5e-2837.86Show/hide
Query:  MRDRGKGKCVQPMQNSFGSLSDLSEGENWALAL---------------------------------------------RFRGAWGYTCSYNSSGVGQIWV
        +RDRGK   V  M NSFGSL ++ + + WAL++                                             RF  +W Y+CSY++SGVG+IWV
Subjt:  MRDRGKGKCVQPMQNSFGSLSDLSEGENWALAL---------------------------------------------RFRGAWGYTCSYNSSGVGQIWV

Query:  MWKRDRFAFTPNVVDEH-------------------------NVNRRGLWRRLADITSGWSIPGVVMGDFNAIRVYSDG--ENLVPGDMEEFDLAIREAD
        MWK++RF+F+ +V+DE                          N+ RR LW RL +ITS WS PGVVM DFNAIRV+S+    + + G+ME+F+LAIR+AD
Subjt:  MWKRDRFAFTPNVVDEH-------------------------NVNRRGLWRRLADITSGWSIPGVVMGDFNAIRVYSDG--ENLVPGDMEEFDLAIREAD

Query:  LVESSI
        LVE S+
Subjt:  LVESSI

A0A5A7U3C2 Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein3.1e-2948.91Show/hide
Query:  EGENWALALRFRGAWGYTCSYNSSGVGQIWVMWKRDRFAFTPNVVDEH-------------------------NVNRRGLWRRLADITSGWSIPGVVMGD
        EG   +++ RF  +W Y+CSY++SGVG+IWVMWK++RF+F+ +V+DE                          N+ RR LWRRL +ITS WS PGVVMGD
Subjt:  EGENWALALRFRGAWGYTCSYNSSGVGQIWVMWKRDRFAFTPNVVDEH-------------------------NVNRRGLWRRLADITSGWSIPGVVMGD

Query:  FNAIRVYSD--GENLVPGDMEEFDLAIREADLVESSI
        FNAIRV+S+  G + + G+ME+FDLAIR+ADL+E S+
Subjt:  FNAIRVYSD--GENLVPGDMEEFDLAIREADLVESSI

A0A5A7V9D6 Uncharacterized protein3.5e-2848.18Show/hide
Query:  EGENWALALRFRGAWGYTCSYNSSGVGQIWVMWKRDRFAFTPNVVDEH-------------------------NVNRRGLWRRLADITSGWSIPGVVMGD
        EG   +++ +F  +W Y+CSY++SGVG+IWVMWK++RF+F+ +V+DE                          N+ RR LWRRL +ITS WS PGVVMGD
Subjt:  EGENWALALRFRGAWGYTCSYNSSGVGQIWVMWKRDRFAFTPNVVDEH-------------------------NVNRRGLWRRLADITSGWSIPGVVMGD

Query:  FNAIRVYSD--GENLVPGDMEEFDLAIREADLVESSI
        FNAIRV+S+  G + + G+ME+FDLAI +ADLVE S+
Subjt:  FNAIRVYSD--GENLVPGDMEEFDLAIREADLVESSI

A0A5D3DXE4 Reverse transcriptase domain-containing protein3.5e-2837.86Show/hide
Query:  MRDRGKGKCVQPMQNSFGSLSDLSEGENWALAL---------------------------------------------RFRGAWGYTCSYNSSGVGQIWV
        +RDRGK   V  M NSFGSL ++ + + WAL++                                             RF  +W Y+CSY++SGVG+IWV
Subjt:  MRDRGKGKCVQPMQNSFGSLSDLSEGENWALAL---------------------------------------------RFRGAWGYTCSYNSSGVGQIWV

Query:  MWKRDRFAFTPNVVDEH-------------------------NVNRRGLWRRLADITSGWSIPGVVMGDFNAIRVYSDG--ENLVPGDMEEFDLAIREAD
        MWK++RF+F+ +V+DE                          N+ RR LW RL +ITS WS PGVVM DFNAIRV+S+    + + G+ME+F+LAIR+AD
Subjt:  MWKRDRFAFTPNVVDEH-------------------------NVNRRGLWRRLADITSGWSIPGVVMGDFNAIRVYSDG--ENLVPGDMEEFDLAIREAD

Query:  LVESSI
        LVE S+
Subjt:  LVESSI

A0A5D3DXQ8 Reverse transcriptase domain-containing protein2.2e-2750.78Show/hide
Query:  RFRGAWGYTCSYNSSGVGQIWVMWKRDRFAFTPNVVDEH-------------------------NVNRRGLWRRLADITSGWSIPGVVMGDFNAIRVYSD
        RF  +W Y+CSY++SGVGQIWVMWK++ F+F+  VVDE                          N+ RR LW RL +IT GWS PG+VMGDFNAIRV+S+
Subjt:  RFRGAWGYTCSYNSSGVGQIWVMWKRDRFAFTPNVVDEH-------------------------NVNRRGLWRRLADITSGWSIPGVVMGDFNAIRVYSD

Query:  --GENLVPGDMEEFDLAIREADLVESSI
          G + + G+ME+FDLAIR+ADLVE S+
Subjt:  --GENLVPGDMEEFDLAIREADLVESSI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAGATAGAGGGAAAGGAAAATGTGTGCAGCCTATGCAGAATTCCTTTGGTAGTCTTTCTGATTTGAGTGAGGGAGAAAATTGGGCGTTGGCATTAAGGTTTAGGGG
TGCTTGGGGTTACACTTGTAGCTATAACAGCAGTGGTGTTGGGCAGATTTGGGTGATGTGGAAGCGGGATAGATTTGCTTTTACTCCTAATGTGGTGGATGAGCATAATG
TAAATCGTCGTGGGCTTTGGCGACGGTTAGCTGACATCACTTCTGGATGGTCGATTCCGGGGGTTGTCATGGGTGACTTTAATGCTATTCGTGTGTACTCTGATGGTGAG
AATCTGGTTCCTGGTGATATGGAGGAGTTTGATCTTGCTATTCGTGAGGCTGACTTGGTGGAGTCGTCTATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGAGATAGAGGGAAAGGAAAATGTGTGCAGCCTATGCAGAATTCCTTTGGTAGTCTTTCTGATTTGAGTGAGGGAGAAAATTGGGCGTTGGCATTAAGGTTTAGGGG
TGCTTGGGGTTACACTTGTAGCTATAACAGCAGTGGTGTTGGGCAGATTTGGGTGATGTGGAAGCGGGATAGATTTGCTTTTACTCCTAATGTGGTGGATGAGCATAATG
TAAATCGTCGTGGGCTTTGGCGACGGTTAGCTGACATCACTTCTGGATGGTCGATTCCGGGGGTTGTCATGGGTGACTTTAATGCTATTCGTGTGTACTCTGATGGTGAG
AATCTGGTTCCTGGTGATATGGAGGAGTTTGATCTTGCTATTCGTGAGGCTGACTTGGTGGAGTCGTCTATTTAA
Protein sequenceShow/hide protein sequence
MRDRGKGKCVQPMQNSFGSLSDLSEGENWALALRFRGAWGYTCSYNSSGVGQIWVMWKRDRFAFTPNVVDEHNVNRRGLWRRLADITSGWSIPGVVMGDFNAIRVYSDGE
NLVPGDMEEFDLAIREADLVESSI