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PI0006433 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006433
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr08:8478091..8479467
RNA-Seq ExpressionPI0006433
SyntenyPI0006433
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033247.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.0e-2262.5Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQP-QATFSSNNQDVSINQCNK
        G  +KV KCGVCGL+GHPNDKCP ++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+  QA  +S+NQ +++    K
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQP-QATFSSNNQDVSINQCNK

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.0e-2262.5Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ-PQATFSSNNQDVSINQCNK
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+  QA  +S+NQ  ++    K
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ-PQATFSSNNQDVSINQCNK

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.0e-2261.25Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ-PQATFSSNNQDVSINQCNK
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN+GWRDNPNLRWGN+NQ+  QA  +S+NQ  ++    K
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ-PQATFSSNNQDVSINQCNK

TYK19600.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.2e-2262.5Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQP-QATFSSNNQDVSINQCNK
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+  QA  +S+NQ +++    K
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQP-QATFSSNNQDVSINQCNK

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]5.0e-2261.25Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ-PQATFSSNNQDVSINQCNK
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN+GWRDNPNLRWGN+NQ+  QA  +S+NQ  ++    K
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ-PQATFSSNNQDVSINQCNK

TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919102.4e-2261.25Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ-PQATFSSNNQDVSINQCNK
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN+GWRDNPNLRWGN+NQ+  QA  +S+NQ  ++    K
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ-PQATFSSNNQDVSINQCNK

A0A5A7SVA1 Retrotransposon gag protein2.4e-2262.5Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQP-QATFSSNNQDVSINQCNK
        G  +KV KCGVCGL+GHPNDKCP ++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+  QA  +S+NQ +++    K
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQP-QATFSSNNQDVSINQCNK

A0A5D3CRR8 Retrotransposon gag protein4.8e-2362.5Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ-PQATFSSNNQDVSINQCNK
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+  QA  +S+NQ  ++    K
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ-PQATFSSNNQDVSINQCNK

A0A5D3D815 Retrotransposon gag protein1.1e-2262.5Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQP-QATFSSNNQDVSINQCNK
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+  QA  +S+NQ +++    K
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQP-QATFSSNNQDVSINQCNK

A0A5D3DCG3 Retrotransposon gag protein2.4e-2261.25Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ-PQATFSSNNQDVSINQCNK
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN+GWRDNPNLRWGN+NQ+  QA  +S+NQ  ++    K
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ-PQATFSSNNQDVSINQCNK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCCGGGGAGCTTCGGCGGAAATGTAAAAGTTGCCAAATGTGGAGTTTGCGGATTAATAGGACATCCTAATGACAAGTGCCCTGACCTAGTGGAAGAGGC
AAATGTCATTAGGAAGTATGATCCTCAAGGAAATACTTACAATGCCGGTTGGAGAGATAATCCCAACCTTAGATGGGGAAACAACAATCAACAACCACAAGCAACTTTTT
CCTCAAATAATCAAGATGTCTCAATTAACCAATGCAATAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCCGGGGAGCTTCGGCGGAAATGTAAAAGTTGCCAAATGTGGAGTTTGCGGATTAATAGGACATCCTAATGACAAGTGCCCTGACCTAGTGGAAGAGGC
AAATGTCATTAGGAAGTATGATCCTCAAGGAAATACTTACAATGCCGGTTGGAGAGATAATCCCAACCTTAGATGGGGAAACAACAATCAACAACCACAAGCAACTTTTT
CCTCAAATAATCAAGATGTCTCAATTAACCAATGCAATAAGTAA
Protein sequenceShow/hide protein sequence
MAPLPGSFGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPQATFSSNNQDVSINQCNK