CuGenDBv2

Gene ID	PI0006437
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr11:21249945..21255154
RNA-Seq Expression	PI0006437
Synteny	PI0006437
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]

3.1e-85

70.37

Show/hide

Query:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILASMSNVLSKKHESMVTARQIMDSLQE
        M S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP  P  NA++TVR+ Y+RW KAN+KAR YILAS+S VL+KKHESM+TAR+IMDSLQE
Subjt:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILASMSNVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQVRHEAIKYVYNACMKEGQSVREHVLDMIVQFNVVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKG
        MFGQ S Q++H+A+KY+YNA M EG SVREHVL+M+V FNV E NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KG
Subjt:  MFGQPSIQVRHEAIKYVYNACMKEGQSVREHVLDMIVQFNVVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKG

Query:  QKEGEANGAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKGGKG
        QK GEAN A S ++F +GS+SGTKS PSSS  KK +KKKGG+G
Subjt:  QKEGEANGAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKGGKG

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

3.1e-85

70.37

Show/hide

Query:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILASMSNVLSKKHESMVTARQIMDSLQE
        M S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP  P  NA++TVR+ Y+RW KAN+KAR YILAS+S VL+KKHESM+TAR+IMDSLQE
Subjt:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILASMSNVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQVRHEAIKYVYNACMKEGQSVREHVLDMIVQFNVVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKG
        MFGQ S Q++H+A+KY+YNA M EG SVREHVL+M+V FNV E NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KG
Subjt:  MFGQPSIQVRHEAIKYVYNACMKEGQSVREHVLDMIVQFNVVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKG

Query:  QKEGEANGAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKGGKG
        QK GEAN A S ++F +GS+SGTKS PSSS  KK +KKKGG+G
Subjt:  QKEGEANGAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKGGKG

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]

3.1e-85

70.37

Show/hide

Query:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILASMSNVLSKKHESMVTARQIMDSLQE
        M S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP  P  NA++TVR+ Y+RW KAN+KAR YILAS+S VL+KKHESM+TAR+IMDSLQE
Subjt:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILASMSNVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQVRHEAIKYVYNACMKEGQSVREHVLDMIVQFNVVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKG
        MFGQ S Q++H+A+KY+YNA M EG SVREHVL+M+V FNV E NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KG
Subjt:  MFGQPSIQVRHEAIKYVYNACMKEGQSVREHVLDMIVQFNVVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKG

Query:  QKEGEANGAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKGGKG
        QK GEAN A S ++F +GS+SGTKS PSSS  KK +KKKGG+G
Subjt:  QKEGEANGAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKGGKG

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

3.1e-85

70.37

Show/hide

Query:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILASMSNVLSKKHESMVTARQIMDSLQE
        M S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP  P  NA++TVR+ Y+RW KAN+KAR YILAS+S VL+KKHESM+TAR+IMDSLQE
Subjt:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILASMSNVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQVRHEAIKYVYNACMKEGQSVREHVLDMIVQFNVVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKG
        MFGQ S Q++H+A+KY+YNA M EG SVREHVL+M+V FNV E NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KG
Subjt:  MFGQPSIQVRHEAIKYVYNACMKEGQSVREHVLDMIVQFNVVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKG

Query:  QKEGEANGAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKGGKG
        QK GEAN A S ++F +GS+SGTKS PSSS  KK +KKKGG+G
Subjt:  QKEGEANGAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKGGKG

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

3.1e-85

70.37

Show/hide

Query:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILASMSNVLSKKHESMVTARQIMDSLQE
        M S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP  P  NA++TVR+ Y+RW KAN+KAR YILAS+S VL+KKHESM+TAR+IMDSLQE
Subjt:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILASMSNVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQVRHEAIKYVYNACMKEGQSVREHVLDMIVQFNVVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKG
        MFGQ S Q++H+A+KY+YNA M EG SVREHVL+M+V FNV E NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KG
Subjt:  MFGQPSIQVRHEAIKYVYNACMKEGQSVREHVLDMIVQFNVVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKG

Query:  QKEGEANGAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKGGKG
        QK GEAN A S ++F +GS+SGTKS PSSS  KK +KKKGG+G
Subjt:  QKEGEANGAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKGGKG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

1.5e-85

70.37

Show/hide

Query:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILASMSNVLSKKHESMVTARQIMDSLQE
        M S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP  P  NA++TVR+ Y+RW KAN+KAR YILAS+S VL+KKHESM+TAR+IMDSLQE
Subjt:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILASMSNVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQVRHEAIKYVYNACMKEGQSVREHVLDMIVQFNVVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKG
        MFGQ S Q++H+A+KY+YNA M EG SVREHVL+M+V FNV E NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KG
Subjt:  MFGQPSIQVRHEAIKYVYNACMKEGQSVREHVLDMIVQFNVVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKG

Query:  QKEGEANGAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKGGKG
        QK GEAN A S ++F +GS+SGTKS PSSS  KK +KKKGG+G
Subjt:  QKEGEANGAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKGGKG

A0A5A7TU93 Gag/pol protein

1.5e-85

70.37

Show/hide

Query:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILASMSNVLSKKHESMVTARQIMDSLQE
        M S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP  P  NA++TVR+ Y+RW KAN+KAR YILAS+S VL+KKHESM+TAR+IMDSLQE
Subjt:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILASMSNVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQVRHEAIKYVYNACMKEGQSVREHVLDMIVQFNVVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKG
        MFGQ S Q++H+A+KY+YNA M EG SVREHVL+M+V FNV E NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KG
Subjt:  MFGQPSIQVRHEAIKYVYNACMKEGQSVREHVLDMIVQFNVVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKG

Query:  QKEGEANGAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKGGKG
        QK GEAN A S ++F +GS+SGTKS PSSS  KK +KKKGG+G
Subjt:  QKEGEANGAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKGGKG

A0A5A7TWB9 Gag/pol protein

1.5e-85

70.37

Show/hide

Query:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILASMSNVLSKKHESMVTARQIMDSLQE
        M S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP  P  NA++TVR+ Y+RW KAN+KAR YILAS+S VL+KKHESM+TAR+IMDSLQE
Subjt:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILASMSNVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQVRHEAIKYVYNACMKEGQSVREHVLDMIVQFNVVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKG
        MFGQ S Q++H+A+KY+YNA M EG SVREHVL+M+V FNV E NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KG
Subjt:  MFGQPSIQVRHEAIKYVYNACMKEGQSVREHVLDMIVQFNVVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKG

Query:  QKEGEANGAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKGGKG
        QK GEAN A S ++F +GS+SGTKS PSSS  KK +KKKGG+G
Subjt:  QKEGEANGAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKGGKG

A0A5D3CPJ6 Gag/pol protein

1.5e-85

70.37

Show/hide

Query:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILASMSNVLSKKHESMVTARQIMDSLQE
        M S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP  P  NA++TVR+ Y+RW KAN+KAR YILAS+S VL+KKHESM+TAR+IMDSLQE
Subjt:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILASMSNVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQVRHEAIKYVYNACMKEGQSVREHVLDMIVQFNVVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKG
        MFGQ S Q++H+A+KY+YNA M EG SVREHVL+M+V FNV E NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KG
Subjt:  MFGQPSIQVRHEAIKYVYNACMKEGQSVREHVLDMIVQFNVVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKG

Query:  QKEGEANGAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKGGKG
        QK GEAN A S ++F +GS+SGTKS PSSS  KK +KKKGG+G
Subjt:  QKEGEANGAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKGGKG

A0A5D3CSZ6 Gag/pol protein

1.5e-85

70.37

Show/hide

Query:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILASMSNVLSKKHESMVTARQIMDSLQE
        M S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP  P  NA++TVR+ Y+RW KAN+KAR YILAS+S VL+KKHESM+TAR+IMDSLQE
Subjt:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILASMSNVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQVRHEAIKYVYNACMKEGQSVREHVLDMIVQFNVVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKG
        MFGQ S Q++H+A+KY+YNA M EG SVREHVL+M+V FNV E NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KG
Subjt:  MFGQPSIQVRHEAIKYVYNACMKEGQSVREHVLDMIVQFNVVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKG

Query:  QKEGEANGAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKGGKG
        QK GEAN A S ++F +GS+SGTKS PSSS  KK +KKKGG+G
Subjt:  QKEGEANGAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKGGKG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTT
CGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAACGCATCCCAGACTGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGACAAGGCCCGAGTCTACATCT
TGGCCAGTATGTCTAACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAAATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAGTCCGG
CACGAGGCTATTAAATACGTTTATAATGCCTGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATAGTCCAATTCAACGTGGTAGAAACGAACGGGGC
GGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTA
CCCTCCTTAACGAGTTGCAAACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGGTGCTCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCT
GGAACCAAGTCTGCACCTTCATCTTCTAGGACTAAGAAAATCCAGAAGAAGAAAGGAGGAAAGGGAAAGGTCCATTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILASMSNVLSKKHESMVTARQIMDSLQEMFGQPSIQVR
HEAIKYVYNACMKEGQSVREHVLDMIVQFNVVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANGAHSKRFQKGSSS
GTKSAPSSSRTKKIQKKKGGKGKVH

PI0006437 (gene) of Melon (PI 482460) v1 genome