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PI0006460 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006460
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr11:17946329..17946727
RNA-Seq ExpressionPI0006460
SyntenyPI0006460
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036753.1 hypothetical protein E6C27_scaffold20G00320 [Cucumis melo var. makuwa]6.0e-1955Show/hide
Query:  PFMFLEKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKTEHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAI
        PF  LEKIN+NAYKVDLR                   GN+DSR N FKE E D ML                  +SEEENE HA  SWEN  SQ NQEAI
Subjt:  PFMFLEKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKTEHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAI

Query:  IMLQGSMTKARAKRLQDGLN
        IM QGSMTKARAKRLQDGLN
Subjt:  IMLQGSMTKARAKRLQDGLN

KAA0065903.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-2455.91Show/hide
Query:  PFMFLEKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKTEHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAI
        PF  LEK+N+NAYKVDLR                   GN+DSR NPF+E ENDKML+N           +A+TNS++EENE HAE SW N   Q NQE I
Subjt:  PFMFLEKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKTEHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAI

Query:  IMLQGSMTKARAKRLQDGLNACLQAKF
        IM QGSMTKARAKR +D LNACLQA+F
Subjt:  IMLQGSMTKARAKRLQDGLNACLQAKF

TYK14528.1 integrase [Cucumis melo var. makuwa]1.2e-1159.76Show/hide
Query:  YTGNYDSRMNPFKEVENDKMLHNKTEHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAIIMLQGSMTKARAKRLQD
        +  N+DS  NPFKE ENDKML+N           +AHTNS+E+ENE H   SWENF  Q NQEA IM Q SMTKARAK LQD
Subjt:  YTGNYDSRMNPFKEVENDKMLHNKTEHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAIIMLQGSMTKARAKRLQD

TYK15114.1 Zinc finger, CCHC-type [Cucumis melo var. makuwa]2.1e-2455.91Show/hide
Query:  PFMFLEKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKTEHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAI
        PF  LEK+N+NAYKVDLR                   GN+DSR NPF+E ENDKML+N           +A+TNS++EENE HAE SW N   Q NQE I
Subjt:  PFMFLEKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKTEHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAI

Query:  IMLQGSMTKARAKRLQDGLNACLQAKF
        IM QGSMTKARAKR +D LNACLQA+F
Subjt:  IMLQGSMTKARAKRLQDGLNACLQAKF

TYK19543.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]3.4e-2257.6Show/hide
Query:  EKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKTEHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAIIMLQG
        EKIN+NAYKVDLR                   GN+D R NPF+E END ML++           +AHTNS+EEENE HA  SWEN  SQ NQEAIIM QG
Subjt:  EKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKTEHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAIIMLQG

Query:  SMTKARAKRLQDGLNACL--QAKFF
        SMTKARAKRLQD LNACL    KFF
Subjt:  SMTKARAKRLQDGLNACL--QAKFF

TrEMBL top hitse value%identityAlignment
A0A5A7VCL9 Reverse transcriptase1.0e-2455.91Show/hide
Query:  PFMFLEKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKTEHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAI
        PF  LEK+N+NAYKVDLR                   GN+DSR NPF+E ENDKML+N           +A+TNS++EENE HAE SW N   Q NQE I
Subjt:  PFMFLEKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKTEHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAI

Query:  IMLQGSMTKARAKRLQDGLNACLQAKF
        IM QGSMTKARAKR +D LNACLQA+F
Subjt:  IMLQGSMTKARAKRLQDGLNACLQAKF

A0A5D3B744 Integrase catalytic domain-containing protein2.9e-1955Show/hide
Query:  PFMFLEKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKTEHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAI
        PF  LEKIN+NAYKVDLR                   GN+DSR N FKE E D ML                  +SEEENE HA  SWEN  SQ NQEAI
Subjt:  PFMFLEKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKTEHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAI

Query:  IMLQGSMTKARAKRLQDGLN
        IM QGSMTKARAKRLQDGLN
Subjt:  IMLQGSMTKARAKRLQDGLN

A0A5D3CTJ1 Integrase5.8e-1259.76Show/hide
Query:  YTGNYDSRMNPFKEVENDKMLHNKTEHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAIIMLQGSMTKARAKRLQD
        +  N+DS  NPFKE ENDKML+N           +AHTNS+E+ENE H   SWENF  Q NQEA IM Q SMTKARAK LQD
Subjt:  YTGNYDSRMNPFKEVENDKMLHNKTEHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAIIMLQGSMTKARAKRLQD

A0A5D3CW05 Zinc finger, CCHC-type1.0e-2455.91Show/hide
Query:  PFMFLEKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKTEHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAI
        PF  LEK+N+NAYKVDLR                   GN+DSR NPF+E ENDKML+N           +A+TNS++EENE HAE SW N   Q NQE I
Subjt:  PFMFLEKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKTEHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAI

Query:  IMLQGSMTKARAKRLQDGLNACLQAKF
        IM QGSMTKARAKR +D LNACLQA+F
Subjt:  IMLQGSMTKARAKRLQDGLNACLQAKF

A0A5D3D7R5 Transposon Ty3-G Gag-Pol polyprotein1.6e-2257.6Show/hide
Query:  EKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKTEHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAIIMLQG
        EKIN+NAYKVDLR                   GN+D R NPF+E END ML++           +AHTNS+EEENE HA  SWEN  SQ NQEAIIM QG
Subjt:  EKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKTEHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAIIMLQG

Query:  SMTKARAKRLQDGLNACL--QAKFF
        SMTKARAKRLQD LNACL    KFF
Subjt:  SMTKARAKRLQDGLNACL--QAKFF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACCCTTTCATGTTTTTAGAAAAGATCAACAATAATGCATACAAAGTTGATCTTCGAAGTAAGTATCATGTGAGTGTTACATTTAATGTTGTTGACTTATCCTTTTT
TTATACAGGTAATTATGATTCGAGGATGAATCCTTTCAAAGAGGTGGAGAATGATAAGATGTTGCACAACAAAACAGAACATGAGGTAGAAAACGAGGCTCAGCAAGCTC
ACACCAATTCAAGTGAAGAGGAAAATGAAGTACATGCTGAAACTTCATGGGAGAACTTTACAAGTCAAATTAATCAAGAGGCAATCATTATGCTTCAAGGTTCAATGACA
AAAGCTAGAGCTAAAAGACTTCAAGATGGATTAAATGCTTGTTTACAAGCTAAATTTTTCAGCCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCACCCTTTCATGTTTTTAGAAAAGATCAACAATAATGCATACAAAGTTGATCTTCGAAGTAAGTATCATGTGAGTGTTACATTTAATGTTGTTGACTTATCCTTTTT
TTATACAGGTAATTATGATTCGAGGATGAATCCTTTCAAAGAGGTGGAGAATGATAAGATGTTGCACAACAAAACAGAACATGAGGTAGAAAACGAGGCTCAGCAAGCTC
ACACCAATTCAAGTGAAGAGGAAAATGAAGTACATGCTGAAACTTCATGGGAGAACTTTACAAGTCAAATTAATCAAGAGGCAATCATTATGCTTCAAGGTTCAATGACA
AAAGCTAGAGCTAAAAGACTTCAAGATGGATTAAATGCTTGTTTACAAGCTAAATTTTTCAGCCTTTAA
Protein sequenceShow/hide protein sequence
MHPFMFLEKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKTEHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAIIMLQGSMT
KARAKRLQDGLNACLQAKFFSL