; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0006463 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006463
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr03:10851418..10856678
RNA-Seq ExpressionPI0006463
SyntenyPI0006463
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]2.9e-6364.36Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCRVCDLVGHPNDKCPNLVEEANVIRKYDPHSNTYNTNWRDNPNLRWGKNNQRPSQATSSSNNQGTNLEDLVKALAPNTI
        MLNMTTLLTSFVQG  +KV KC VC LVGHPNDKCP ++E+ N++RKYDP+ NTYN+ WRDNPNLRWG +NQ+ +QA  +S+NQGTNLED++KALA NT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCRVCDLVGHPNDKCPNLVEEANVIRKYDPHSNTYNTNWRDNPNLRWGKNNQRPSQATSSSNNQGTNLEDLVKALAPNTI

Query:  SFQNEMKQQMSHLTNVISKLEGKGKLPAQPDHVNVSAISLRSGKILET-LSSEEKVTSTPILLENKDEKKEEKLETSPLPSSSKAFHPSRPSISIFPFEP
        SFQ EMKQQM+ LT  ISK++GKGKLPAQPD+ NVSAISLRSGKIL+T  + E+KVTS  + L +K+E KEEK+ET+  PS+SK  +   P     P+ P
Subjt:  SFQNEMKQQMSHLTNVISKLEGKGKLPAQPDHVNVSAISLRSGKILET-LSSEEKVTSTPILLENKDEKKEEKLETSPLPSSSKAFHPSRPSISIFPFEP

Query:  LP
         P
Subjt:  LP

KAA0031967.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.9e-6364.36Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCRVCDLVGHPNDKCPNLVEEANVIRKYDPHSNTYNTNWRDNPNLRWGKNNQRPSQATSSSNNQGTNLEDLVKALAPNTI
        MLNMTTLLTSFVQG  +KV KCRVC LVGHPNDKCP ++EE N+++KYDP+SNTYNT WRDNP LRWG +NQ+ +QA ++S+NQ TNL+D++KALA NT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCRVCDLVGHPNDKCPNLVEEANVIRKYDPHSNTYNTNWRDNPNLRWGKNNQRPSQATSSSNNQGTNLEDLVKALAPNTI

Query:  SFQNEMKQQMSHLTNVISKLEGKGKLPAQPDHVNVSAISLRSGKILETLSS-EEKVTSTPILLENKDEKKEEKLETSPLPSSSKAFHPSRPSISIFPFEP
        SFQ EMKQQM+ LT  ISK++GKGKLPAQP+H NVS ISLRSGKIL+T S+ E+KVTS P+ L +K+E KEEK+ET+P  S+ K  +   P     P+ P
Subjt:  SFQNEMKQQMSHLTNVISKLEGKGKLPAQPDHVNVSAISLRSGKILETLSS-EEKVTSTPILLENKDEKKEEKLETSPLPSSSKAFHPSRPSISIFPFEP

Query:  LP
         P
Subjt:  LP

KAA0050529.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.9e-6367.93Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCRVCDLVGHPNDKCPNLVEEANVIRKYDPHSNTYNTNWRDNPNLRWGKNNQRPSQATSSSNNQGTNLEDLVKALAPNTI
        M NMTTLLTSFVQG  +KV KC VC LVGHPNDKCP ++E+ N++RKYDPH NTYN  WRDNPNLRWG +NQ+ +QA  +S+NQGTNLED++KAL   T+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCRVCDLVGHPNDKCPNLVEEANVIRKYDPHSNTYNTNWRDNPNLRWGKNNQRPSQATSSSNNQGTNLEDLVKALAPNTI

Query:  SFQNEMKQQMSHLTNVISKLEGKGKLPAQPDHVNVSAISLRSGKILET-LSSEEKVTSTPILLENKDEKKEEKLETSPLPSSSK
        SFQ EMKQQM+ LT  ISK++ KGKLPAQPDH NVSAISLRSGKIL+T  + E+KVTS P+   +K+E KEEK+ET+P PS+SK
Subjt:  SFQNEMKQQMSHLTNVISKLEGKGKLPAQPDHVNVSAISLRSGKILET-LSSEEKVTSTPILLENKDEKKEEKLETSPLPSSSK

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.7e-6365.02Show/hide
Query:  MLNM-TTLLTSFVQGGSVKVAKCRVCDLVGHPNDKCPNLVEEANVIRKYDPHSNTYNTNWRDNPNLRWGKNNQRPSQATSSSNNQGTNLEDLVKALAPNT
        MLNM TTLLTSFVQG  +KV KC VC LVGH N+KCP ++E+ N++R+YDPHSNTYN+ WRDNPNLRWG +NQ+ +QA S+S+NQGTNLED++KALA NT
Subjt:  MLNM-TTLLTSFVQGGSVKVAKCRVCDLVGHPNDKCPNLVEEANVIRKYDPHSNTYNTNWRDNPNLRWGKNNQRPSQATSSSNNQGTNLEDLVKALAPNT

Query:  ISFQNEMKQQMSHLTNVISKLEGKGKLPAQPDHVNVSAISLRSGKILET-LSSEEKVTSTPILLENKDEKKEEKLETSPLPSSSKAFHPSRPSISIFPFE
        +SFQ EMKQQM+ LT  ISK++GKGKLPAQ DH NVSAISLRSGKIL+T  + E+KVTS P+ L +K+E KEEK+ET+P PS+SK  +   P     P+ 
Subjt:  ISFQNEMKQQMSHLTNVISKLEGKGKLPAQPDHVNVSAISLRSGKILET-LSSEEKVTSTPILLENKDEKKEEKLETSPLPSSSKAFHPSRPSISIFPFE

Query:  PLP
        P P
Subjt:  PLP

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]4.9e-6363.86Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCRVCDLVGHPNDKCPNLVEEANVIRKYDPHSNTYNTNWRDNPNLRWGKNNQRPSQATSSSNNQGTNLEDLVKALAPNTI
        MLNMTTLLTSFVQG ++KV KC VC LVG+PNDKCP ++E+ N++R+YDPH NTYN  WRDNPNLRWG +NQ+ +QA  +S+NQGTNLED++KALA NT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCRVCDLVGHPNDKCPNLVEEANVIRKYDPHSNTYNTNWRDNPNLRWGKNNQRPSQATSSSNNQGTNLEDLVKALAPNTI

Query:  SFQNEMKQQMSHLTNVISKLEGKGKLPAQPDHVNVSAISLRSGKILET-LSSEEKVTSTPILLENKDEKKEEKLETSPLPSSSKAFHPSRPSISIFPFEP
        SFQ +MKQQM+ LT VISK++GKGKLPAQPDHVNVSAISLRSGKIL+T  + E+KVTS  + L +K++ KEEK+ET+   S+SK  +   P     P+ P
Subjt:  SFQNEMKQQMSHLTNVISKLEGKGKLPAQPDHVNVSAISLRSGKILET-LSSEEKVTSTPILLENKDEKKEEKLETSPLPSSSKAFHPSRPSISIFPFEP

Query:  LP
         P
Subjt:  LP

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032912.4e-6363.86Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCRVCDLVGHPNDKCPNLVEEANVIRKYDPHSNTYNTNWRDNPNLRWGKNNQRPSQATSSSNNQGTNLEDLVKALAPNTI
        MLNMTTLLTSFVQG ++KV KC VC LVG+PNDKCP ++E+ N++R+YDPH NTYN  WRDNPNLRWG +NQ+ +QA  +S+NQGTNLED++KALA NT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCRVCDLVGHPNDKCPNLVEEANVIRKYDPHSNTYNTNWRDNPNLRWGKNNQRPSQATSSSNNQGTNLEDLVKALAPNTI

Query:  SFQNEMKQQMSHLTNVISKLEGKGKLPAQPDHVNVSAISLRSGKILET-LSSEEKVTSTPILLENKDEKKEEKLETSPLPSSSKAFHPSRPSISIFPFEP
        SFQ +MKQQM+ LT VISK++GKGKLPAQPDHVNVSAISLRSGKIL+T  + E+KVTS  + L +K++ KEEK+ET+   S+SK  +   P     P+ P
Subjt:  SFQNEMKQQMSHLTNVISKLEGKGKLPAQPDHVNVSAISLRSGKILET-LSSEEKVTSTPILLENKDEKKEEKLETSPLPSSSKAFHPSRPSISIFPFEP

Query:  LP
         P
Subjt:  LP

A0A5A7SRF5 Retrotransposon gag protein1.4e-6364.36Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCRVCDLVGHPNDKCPNLVEEANVIRKYDPHSNTYNTNWRDNPNLRWGKNNQRPSQATSSSNNQGTNLEDLVKALAPNTI
        MLNMTTLLTSFVQG  +KV KCRVC LVGHPNDKCP ++EE N+++KYDP+SNTYNT WRDNP LRWG +NQ+ +QA ++S+NQ TNL+D++KALA NT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCRVCDLVGHPNDKCPNLVEEANVIRKYDPHSNTYNTNWRDNPNLRWGKNNQRPSQATSSSNNQGTNLEDLVKALAPNTI

Query:  SFQNEMKQQMSHLTNVISKLEGKGKLPAQPDHVNVSAISLRSGKILETLSS-EEKVTSTPILLENKDEKKEEKLETSPLPSSSKAFHPSRPSISIFPFEP
        SFQ EMKQQM+ LT  ISK++GKGKLPAQP+H NVS ISLRSGKIL+T S+ E+KVTS P+ L +K+E KEEK+ET+P  S+ K  +   P     P+ P
Subjt:  SFQNEMKQQMSHLTNVISKLEGKGKLPAQPDHVNVSAISLRSGKILETLSS-EEKVTSTPILLENKDEKKEEKLETSPLPSSSKAFHPSRPSISIFPFEP

Query:  LP
         P
Subjt:  LP

A0A5A7UAL2 Retrotransposon gag protein2.4e-6367.93Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCRVCDLVGHPNDKCPNLVEEANVIRKYDPHSNTYNTNWRDNPNLRWGKNNQRPSQATSSSNNQGTNLEDLVKALAPNTI
        M NMTTLLTSFVQG  +KV KC VC LVGHPNDKCP ++E+ N++RKYDPH NTYN  WRDNPNLRWG +NQ+ +QA  +S+NQGTNLED++KAL   T+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCRVCDLVGHPNDKCPNLVEEANVIRKYDPHSNTYNTNWRDNPNLRWGKNNQRPSQATSSSNNQGTNLEDLVKALAPNTI

Query:  SFQNEMKQQMSHLTNVISKLEGKGKLPAQPDHVNVSAISLRSGKILET-LSSEEKVTSTPILLENKDEKKEEKLETSPLPSSSK
        SFQ EMKQQM+ LT  ISK++ KGKLPAQPDH NVSAISLRSGKIL+T  + E+KVTS P+   +K+E KEEK+ET+P PS+SK
Subjt:  SFQNEMKQQMSHLTNVISKLEGKGKLPAQPDHVNVSAISLRSGKILET-LSSEEKVTSTPILLENKDEKKEEKLETSPLPSSSK

A0A5A7VQ60 Retrotransposon gag protein8.1e-6465.02Show/hide
Query:  MLNM-TTLLTSFVQGGSVKVAKCRVCDLVGHPNDKCPNLVEEANVIRKYDPHSNTYNTNWRDNPNLRWGKNNQRPSQATSSSNNQGTNLEDLVKALAPNT
        MLNM TTLLTSFVQG  +KV KC VC LVGH N+KCP ++E+ N++R+YDPHSNTYN+ WRDNPNLRWG +NQ+ +QA S+S+NQGTNLED++KALA NT
Subjt:  MLNM-TTLLTSFVQGGSVKVAKCRVCDLVGHPNDKCPNLVEEANVIRKYDPHSNTYNTNWRDNPNLRWGKNNQRPSQATSSSNNQGTNLEDLVKALAPNT

Query:  ISFQNEMKQQMSHLTNVISKLEGKGKLPAQPDHVNVSAISLRSGKILET-LSSEEKVTSTPILLENKDEKKEEKLETSPLPSSSKAFHPSRPSISIFPFE
        +SFQ EMKQQM+ LT  ISK++GKGKLPAQ DH NVSAISLRSGKIL+T  + E+KVTS P+ L +K+E KEEK+ET+P PS+SK  +   P     P+ 
Subjt:  ISFQNEMKQQMSHLTNVISKLEGKGKLPAQPDHVNVSAISLRSGKILET-LSSEEKVTSTPILLENKDEKKEEKLETSPLPSSSKAFHPSRPSISIFPFE

Query:  PLP
        P P
Subjt:  PLP

E5GBZ4 Retrotransposon gag protein1.4e-6364.36Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCRVCDLVGHPNDKCPNLVEEANVIRKYDPHSNTYNTNWRDNPNLRWGKNNQRPSQATSSSNNQGTNLEDLVKALAPNTI
        MLNMTTLLTSFVQG  +KV KC VC LVGHPNDKCP ++E+ N++RKYDP+ NTYN+ WRDNPNLRWG +NQ+ +QA  +S+NQGTNLED++KALA NT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCRVCDLVGHPNDKCPNLVEEANVIRKYDPHSNTYNTNWRDNPNLRWGKNNQRPSQATSSSNNQGTNLEDLVKALAPNTI

Query:  SFQNEMKQQMSHLTNVISKLEGKGKLPAQPDHVNVSAISLRSGKILET-LSSEEKVTSTPILLENKDEKKEEKLETSPLPSSSKAFHPSRPSISIFPFEP
        SFQ EMKQQM+ LT  ISK++GKGKLPAQPD+ NVSAISLRSGKIL+T  + E+KVTS  + L +K+E KEEK+ET+  PS+SK  +   P     P+ P
Subjt:  SFQNEMKQQMSHLTNVISKLEGKGKLPAQPDHVNVSAISLRSGKILET-LSSEEKVTSTPILLENKDEKKEEKLETSPLPSSSKAFHPSRPSISIFPFEP

Query:  LP
         P
Subjt:  LP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGCAGGGTGTGCGATCTAGTCGGACATCCTAATGACAAGTGTCCTAA
CTTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAACACCAATTGGAGAGACAATCCTAATCTGAGATGGGGAAAAAACAACCAAAGAC
CCTCGCAAGCAACCTCCTCTTCAAACAATCAAGGTACTAATTTGGAAGATTTAGTTAAAGCTCTTGCTCCTAATACTATCTCTTTTCAGAATGAAATGAAACAACAGATG
TCTCATCTAACAAATGTCATAAGCAAATTAGAAGGTAAAGGCAAACTTCCGGCTCAGCCTGATCATGTCAACGTAAGTGCCATCTCGCTTAGAAGCGGTAAGATTCTGGA
AACCCTTTCAAGCGAAGAAAAGGTAACTTCTACCCCTATCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAATTAGAAACTAGTCCTTTACCATCATCTTCTAAAG
CCTTCCATCCGAGCCGTCCGTCAATCTCAATCTTCCCGTTTGAGCCGCTACCAACCGTCCGAGCCGTCCATGCCGAGTCTCAACGTTCCATCATCTCAACGTTACGTGCC
ATCCAAGCCGTCATCTTAGCAGCCGTCCGCTCAACTGCGCCGTCCGTCATCCCAACAGCCATCCGTTCCTCATCCGTGTCGAGCGTTCTTGTTCGAGTTGTTTGTTCCTC
ATCCGCGTCGAGCATTTATGTCCGAGCCGTTCGTCAACAGTCGTCTGTTCCTCATCGATGCATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGCAGGGTGTGCGATCTAGTCGGACATCCTAATGACAAGTGTCCTAA
CTTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAACACCAATTGGAGAGACAATCCTAATCTGAGATGGGGAAAAAACAACCAAAGAC
CCTCGCAAGCAACCTCCTCTTCAAACAATCAAGGTACTAATTTGGAAGATTTAGTTAAAGCTCTTGCTCCTAATACTATCTCTTTTCAGAATGAAATGAAACAACAGATG
TCTCATCTAACAAATGTCATAAGCAAATTAGAAGGTAAAGGCAAACTTCCGGCTCAGCCTGATCATGTCAACGTAAGTGCCATCTCGCTTAGAAGCGGTAAGATTCTGGA
AACCCTTTCAAGCGAAGAAAAGGTAACTTCTACCCCTATCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAATTAGAAACTAGTCCTTTACCATCATCTTCTAAAG
CCTTCCATCCGAGCCGTCCGTCAATCTCAATCTTCCCGTTTGAGCCGCTACCAACCGTCCGAGCCGTCCATGCCGAGTCTCAACGTTCCATCATCTCAACGTTACGTGCC
ATCCAAGCCGTCATCTTAGCAGCCGTCCGCTCAACTGCGCCGTCCGTCATCCCAACAGCCATCCGTTCCTCATCCGTGTCGAGCGTTCTTGTTCGAGTTGTTTGTTCCTC
ATCCGCGTCGAGCATTTATGTCCGAGCCGTTCGTCAACAGTCGTCTGTTCCTCATCGATGCATCTAA
Protein sequenceShow/hide protein sequence
MLNMTTLLTSFVQGGSVKVAKCRVCDLVGHPNDKCPNLVEEANVIRKYDPHSNTYNTNWRDNPNLRWGKNNQRPSQATSSSNNQGTNLEDLVKALAPNTISFQNEMKQQM
SHLTNVISKLEGKGKLPAQPDHVNVSAISLRSGKILETLSSEEKVTSTPILLENKDEKKEEKLETSPLPSSSKAFHPSRPSISIFPFEPLPTVRAVHAESQRSIISTLRA
IQAVILAAVRSTAPSVIPTAIRSSSVSSVLVRVVCSSSASSIYVRAVRQQSSVPHRCI