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PI0006484 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006484
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr03:16538389..16539014
RNA-Seq ExpressionPI0006484
SyntenyPI0006484
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]4.0e-5860.77Show/hide
Query:  MPGHNITATIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNV
        +P  N+ A+ ID RIK LKR F AI +MRGPTCSGFGWNDE KCI+AEK++FD WV+SHPAAKGLLNK FPHYD+L YVF +D ATGGRAE+F DVGSN 
Subjt:  MPGHNITATIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNV

Query:  PPGFEGFAQYDGYDVENPTTCSQGLDMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAE
        P G++ FA     D +     S+GL+MSPD++M  R+ R+SEGR  SSGSK+K GG  +++ +I+R+A+EY N+QL  IAE
Subjt:  PPGFEGFAQYDGYDVENPTTCSQGLDMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAE

KAA0050782.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-5661.33Show/hide
Query:  MPGHNITATIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNV
        +PG NI A+ ID RIK +KR F A++ MR P CSGFGWNDE KCIIAEK++FD WVKSHPAAKGLLNK F HYD+L YVFG+DRATGGRAE+F D+GSN 
Subjt:  MPGHNITATIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNV

Query:  PPGFEGFAQYDGYDVENPTTCSQGLDMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAE
        P G++ FA     D + P   S GL+MSPDD+M  R+ R+SE R  SSGSK K  G A ++ +I+R+A+EY N+QL  IAE
Subjt:  PPGFEGFAQYDGYDVENPTTCSQGLDMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAE

KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]3.8e-5663.93Show/hide
Query:  MPGHNITA-TIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSN
        +PG  + A T+IDCRIKTLKR FQAI++MRGP CSGFGWNDE KCIIAEK+LFD+WV+SHPAAKGLLNKPFP+YD+L YVFGRDRATG  AETF DVGSN
Subjt:  MPGHNITA-TIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSN

Query:  VP-PGFEGFAQYDGYDVENPTTCSQGLDMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAE
         P  G++ F   DG + + P   SQG+D+S DD+   R  R SEGR GSSGSKRK G Q     E I  A++  N+QL+ IAE
Subjt:  VP-PGFEGFAQYDGYDVENPTTCSQGLDMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAE

TYK05082.1 retrotransposon protein [Cucumis melo var. makuwa]6.9e-5861.88Show/hide
Query:  MPGHNITATIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNV
        +PG NI A+ ID RIK +KR F A+++MRGP CSGFGWNDE KCI+ EK+LFD WVKSHPAAKGLLNK F HYD+L YVFG+DRATGGRAE+F D+GSN 
Subjt:  MPGHNITATIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNV

Query:  PPGFEGFAQYDGYDVENPTTCSQGLDMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAE
        PPG++  A     D + P   S GL+MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IAE
Subjt:  PPGFEGFAQYDGYDVENPTTCSQGLDMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAE

XP_031744343.1 uncharacterized protein LOC116404989 [Cucumis sativus]4.4e-5761.54Show/hide
Query:  MPGHNITA-TIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSN
        +PG N+ A T+IDCRIKTLKR++Q I++MRGP+C GFGWND++KCI+AEK+LFD+WV+SHPAAKGLLNK FP+YD+L YVFG+DRA G  AETF DVGSN
Subjt:  MPGHNITA-TIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSN

Query:  VPPGFEGFAQYDGYDVENPTTCSQGLDMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAE
        VPPGFE F   D  D+E P+  S   +MS DDI  P   R ++ R  SSGSKR+ GGQ LE A++I+ AM    D+L+ IAE
Subjt:  VPPGFEGFAQYDGYDVENPTTCSQGLDMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAE

TrEMBL top hitse value%identityAlignment
A0A5A7TRV1 Retrotransposon protein2.4e-5663.39Show/hide
Query:  MPGHNITA-TIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSN
        +PG  + A T+IDCRIKTLKR FQAI++MRGP CSGFGWNDE KCI+AEK+LFD+WV+SHPAAKGLLNKPFP+YD+L YVFGRDRATG  AETF DVGSN
Subjt:  MPGHNITA-TIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSN

Query:  VP-PGFEGFAQYDGYDVENPTTCSQGLDMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAE
         P  G++ F   DG + + P   SQG+D+S DD+   R  R SEGR GSSGSKRK G Q     E I  A++  N+QL+ IAE
Subjt:  VP-PGFEGFAQYDGYDVENPTTCSQGLDMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAE

A0A5A7TZA5 Retrotransposon protein1.9e-5860.77Show/hide
Query:  MPGHNITATIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNV
        +P  N+ A+ ID RIK LKR F AI +MRGPTCSGFGWNDE KCI+AEK++FD WV+SHPAAKGLLNK FPHYD+L YVF +D ATGGRAE+F DVGSN 
Subjt:  MPGHNITATIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNV

Query:  PPGFEGFAQYDGYDVENPTTCSQGLDMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAE
        P G++ FA     D +     S+GL+MSPD++M  R+ R+SEGR  SSGSK+K GG  +++ +I+R+A+EY N+QL  IAE
Subjt:  PPGFEGFAQYDGYDVENPTTCSQGLDMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAE

A0A5A7U4M2 Retrotransposon protein6.3e-5761.33Show/hide
Query:  MPGHNITATIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNV
        +PG NI A+ ID RIK +KR F A++ MR P CSGFGWNDE KCIIAEK++FD WVKSHPAAKGLLNK F HYD+L YVFG+DRATGGRAE+F D+GSN 
Subjt:  MPGHNITATIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNV

Query:  PPGFEGFAQYDGYDVENPTTCSQGLDMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAE
        P G++ FA     D + P   S GL+MSPDD+M  R+ R+SE R  SSGSK K  G A ++ +I+R+A+EY N+QL  IAE
Subjt:  PPGFEGFAQYDGYDVENPTTCSQGLDMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAE

A0A5A7VES2 Retrotransposon protein1.8e-5663.93Show/hide
Query:  MPGHNITA-TIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSN
        +PG  + A T+IDCRIKTLKR FQAI++MRGP CSGFGWNDE KCIIAEK+LFD+WV+SHPAAKGLLNKPFP+YD+L YVFGRDRATG  AETF DVGSN
Subjt:  MPGHNITA-TIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSN

Query:  VP-PGFEGFAQYDGYDVENPTTCSQGLDMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAE
         P  G++ F   DG + + P   SQG+D+S DD+   R  R SEGR GSSGSKRK G Q     E I  A++  N+QL+ IAE
Subjt:  VP-PGFEGFAQYDGYDVENPTTCSQGLDMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAE

A0A5D3C1M0 Retrotransposon protein3.3e-5861.88Show/hide
Query:  MPGHNITATIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNV
        +PG NI A+ ID RIK +KR F A+++MRGP CSGFGWNDE KCI+ EK+LFD WVKSHPAAKGLLNK F HYD+L YVFG+DRATGGRAE+F D+GSN 
Subjt:  MPGHNITATIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNV

Query:  PPGFEGFAQYDGYDVENPTTCSQGLDMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAE
        PPG++  A     D + P   S GL+MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IAE
Subjt:  PPGFEGFAQYDGYDVENPTTCSQGLDMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G30140.1 unknown protein9.1e-0832.93Show/hide
Query:  RIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDD
        R+K LK  +Q+   ++    SGFGW+ E K   A  +++  ++K+HP  K +  +   H++DL  +FG   ATG  A    D
Subjt:  RIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDD

AT2G24960.1 unknown protein7.2e-0532.08Show/hide
Query:  GFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATG
        GF W+   + +I +  L+  ++K+HP A+    KP  ++ DLC ++G   A G
Subjt:  GFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATG

AT2G24960.2 unknown protein1.4e-0828.21Show/hide
Query:  IIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATG
        ++  R K L+R +  I  +     +GF W+     +IA+ D++++++++HP A+    K  P Y +LC++FG++ + G
Subjt:  IIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATG

AT4G02210.1 unknown protein4.8e-0929.87Show/hide
Query:  NITATIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFG
        N    ++  R K+L+R F AI  +      GF W++E + + A+ +++  ++K+H  A+  + +P P+Y DLC + G
Subjt:  NITATIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFG

AT4G02210.2 unknown protein4.8e-0929.87Show/hide
Query:  NITATIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFG
        N    ++  R K+L+R F AI  +      GF W++E + + A+ +++  ++K+H  A+  + +P P+Y DLC + G
Subjt:  NITATIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCGGACATAACATAACGGCTACGATAATAGATTGTCGGATCAAGACATTGAAAAGAGCATTCCAAGCGATATCTAAGATGAGGGGCCCGACGTGTAGTGGGTTCGG
TTGGAATGATGAGCTGAAATGCATCATTGCCGAGAAAGACTTGTTCGACAGTTGGGTGAAGAGTCATCCAGCCGCAAAGGGCCTCCTAAACAAACCCTTTCCCCACTACG
ACGACCTTTGCTACGTGTTCGGAAGAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTCGATGATGTTGGGTCGAACGTGCCTCCAGGCTTCGAAGGGTTTGCCCAATAC
GACGGGTACGATGTGGAGAACCCGACGACGTGCAGTCAGGGCCTAGACATGTCACCTGACGACATAATGACTCCAAGATCGGTTCGTATGTCTGAGGGTAGGCCTGGTTC
GAGCGGGTCGAAGAGGAAACATGGAGGGCAGGCATTGGAGGCGGCTGAAATTATTCGCAGTGCCATGGAATATGCAAATGACCAACTTAAGGCAATTGCAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCGGACATAACATAACGGCTACGATAATAGATTGTCGGATCAAGACATTGAAAAGAGCATTCCAAGCGATATCTAAGATGAGGGGCCCGACGTGTAGTGGGTTCGG
TTGGAATGATGAGCTGAAATGCATCATTGCCGAGAAAGACTTGTTCGACAGTTGGGTGAAGAGTCATCCAGCCGCAAAGGGCCTCCTAAACAAACCCTTTCCCCACTACG
ACGACCTTTGCTACGTGTTCGGAAGAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTCGATGATGTTGGGTCGAACGTGCCTCCAGGCTTCGAAGGGTTTGCCCAATAC
GACGGGTACGATGTGGAGAACCCGACGACGTGCAGTCAGGGCCTAGACATGTCACCTGACGACATAATGACTCCAAGATCGGTTCGTATGTCTGAGGGTAGGCCTGGTTC
GAGCGGGTCGAAGAGGAAACATGGAGGGCAGGCATTGGAGGCGGCTGAAATTATTCGCAGTGCCATGGAATATGCAAATGACCAACTTAAGGCAATTGCAGAATGA
Protein sequenceShow/hide protein sequence
MPGHNITATIIDCRIKTLKRAFQAISKMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFDDVGSNVPPGFEGFAQY
DGYDVENPTTCSQGLDMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAE