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PI0006493 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006493
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionDNA-directed RNA polymerase subunit
Genome locationchr04:10227695..10230917
RNA-Seq ExpressionPI0006493
SyntenyPI0006493
Gene Ontology termsGO:0006386 - termination of RNA polymerase III transcription (biological process)
GO:0042779 - tRNA 3'-trailer cleavage (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001222 - Zinc finger, TFIIS-type
IPR001529 - DNA-directed RNA polymerase, M/15kDa subunit
IPR012164 - DNA-directed RNA polymerase subunit/transcription factor S
IPR019761 - DNA-directed RNA polymerase M, 15kDa subunit, conserved site
IPR029401 - Nudix hydrolase, N-terminal
IPR034014 - Pol III subunit C11, C-terminal zinc ribbon


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597716.1 DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. sororia]4.2e-5896.4Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRLNWRED
        NE+CR NWRED
Subjt:  NENCRLNWRED

KAG7029162.1 DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. argyrosperma]4.2e-5896.4Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRLNWRED
        NE+CR NWRED
Subjt:  NENCRLNWRED

XP_004141147.1 DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus]2.9e-5998.2Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC+FGKAAFIQIQLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRLNWRED
        NENCR NWRED
Subjt:  NENCRLNWRED

XP_022932603.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata]4.2e-5896.4Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRLNWRED
        NE+CR NWRED
Subjt:  NENCRLNWRED

XP_038903069.1 DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida]3.8e-5998.2Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC+FGKAAFIQIQLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRLNWRED
        NENCR NWRED
Subjt:  NENCRLNWRED

TrEMBL top hitse value%identityAlignment
A0A0A0LCM4 DNA-directed RNA polymerase subunit1.4e-5998.2Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC+FGKAAFIQIQLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRLNWRED
        NENCR NWRED
Subjt:  NENCRLNWRED

A0A1S3CQ50 DNA-directed RNA polymerase subunit1.4e-5998.2Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC+FGKAAFIQIQLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRLNWRED
        NENCR NWRED
Subjt:  NENCRLNWRED

A0A6J1DGL3 DNA-directed RNA polymerase subunit1.3e-5792.79Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISD+DMKNAAQTEATCPNC+FGKAAFIQ+QLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRLNWRED
        NE+CR+NWRED
Subjt:  NENCRLNWRED

A0A6J1EXG3 DNA-directed RNA polymerase subunit2.0e-5896.4Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRLNWRED
        NE+CR NWRED
Subjt:  NENCRLNWRED

A0A6J1IB59 DNA-directed RNA polymerase subunit2.0e-5896.4Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRLNWRED
        NE+CR NWRED
Subjt:  NENCRLNWRED

SwissProt top hitse value%identityAlignment
O13896 DNA-directed RNA polymerase III subunit RPC104.1e-1637.72Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD-MKNAAQTEATCPN--CSFGKAAFIQIQLRSADEPATTFY
        M+FCPTCGN L   +   G+++ F C TCPY  +      +  +    +KE++ ++  ++  ++  QTE TC N  C   +A F Q+Q+RSADEP +TFY
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD-MKNAAQTEATCPN--CSFGKAAFIQIQLRSADEPATTFY

Query:  KCMNENCRLNWRED
        +C    C+  WRE+
Subjt:  KCMNENCRLNWRED

Q04307 DNA-directed RNA polymerase III subunit RPC101.0e-1438.6Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPN---CSFGKAAFIQIQLRSADEPATTFY
        + FCP+C NML     + G  +   C +CPY   +E  ++I  ++ L +KE++ ++      N  QT+  CPN   C    A F Q+Q+RSADEP TTFY
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPN---CSFGKAAFIQIQLRSADEPATTFY

Query:  KCMNENCRLNWRED
        KC+  NC   W+E+
Subjt:  KCMNENCRLNWRED

Q2M2S7 DNA-directed RNA polymerase III subunit RPC102.1e-1540.74Show/hide
Query:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNE
        FCP CGN L  E     +  RF C TCPYV  +  +V   RK   +K+  + +      +N   T   CP C   +A F+Q+Q R ADEP TTFYKC N 
Subjt:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNE

Query:  NCRLNWRE
         C   WR+
Subjt:  NCRLNWRE

Q9CQZ7 DNA-directed RNA polymerase III subunit RPC102.4e-1641.28Show/hide
Query:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISD-DDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCMN
        FCP CGN L  E     +  RF C TCPYV  +  +V  ++   L  KE++ ++      +N   T   CP C   +A F+Q+Q RSADEP TTFYKC N
Subjt:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISD-DDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCMN

Query:  ENCRLNWRE
          C   WR+
Subjt:  ENCRLNWRE

Q9Y2Y1 DNA-directed RNA polymerase III subunit RPC101.4e-1641.28Show/hide
Query:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISD-DDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCMN
        FCP CGN L  E     +  RF C TCPYV  +  +V  ++   L  KE++ ++      +N   T  +CP C   +A F+Q+Q RSADEP TTFYKC N
Subjt:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISD-DDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCMN

Query:  ENCRLNWRE
          C   WR+
Subjt:  ENCRLNWRE

Arabidopsis top hitse value%identityAlignment
AT1G01210.1 DNA-directed RNA polymerase, subunit M, archaeal8.5e-3354.05Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGN+L++E    G +SRFFC TCPYV+Y++ +V+IK+KQ LVKK +E +++ DD+  AA+TEA CP C   KA F  +Q+RSADEP + FY+C+
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRLNWRED
           C   WRE+
Subjt:  NENCRLNWRED

AT2G38560.1 transcript elongation factor IIS8.3e-0439.13Show/hide
Query:  AAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRLNWR
        A+  +  C  C   K  + Q+Q RSADEP TT+  C+  NC  +W+
Subjt:  AAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRLNWR

AT4G07950.1 DNA-directed RNA polymerase, subunit M, archaeal7.7e-3456.76Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGN+L++E    G SSRFFC TCPYV+ +E RV+IK+KQ LVKK +EP+++ DD+  AA+TEA CP C   KA F  +Q+RSADEP + FY+C+
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRLNWRED
           C   WRE+
Subjt:  NENCRLNWRED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTTTGCCCAACTTGTGGGAACATGCTGCAATTTGAGTTGCCCAATATGGGTAAATCTTCCAGGTTCTTCTGCCCAACTTGTCCATATGTGTCCTACTTGGAAAA
CAGGGTAAAAATCAAAAGAAAGCAACATCTGGTGAAAAAGGAATTAGAACCCATAATCTCTGATGACGATATGAAAAATGCAGCTCAAACCGAAGCAACATGTCCAAATT
GTTCGTTTGGGAAGGCTGCTTTTATACAAATACAACTGAGATCAGCTGATGAACCTGCTACAACATTTTACAAGTGCATGAACGAAAACTGTAGACTTAATTGGCGTGAG
GATTAA
mRNA sequenceShow/hide mRNA sequence
GAAAACCGGAAAGGCAAGCCCTAACTAAATCAGATTTCCCTCGCAACCACTCCTGTTCGTCTTCAACCCACGACTCACCCCCTCCCCCCATCTTCTTCTTCCTATTTCTT
CGACTAAGCATCGCTAAGTTCCCTACGCCGTTCTCCTACGACCACGTTTCAGCCTCACCACCGCCGGCGGCGGACCTAGCTAATGGAGTTTTGCCCAACTTGTGGGAACA
TGCTGCAATTTGAGTTGCCCAATATGGGTAAATCTTCCAGGTTCTTCTGCCCAACTTGTCCATATGTGTCCTACTTGGAAAACAGGGTAAAAATCAAAAGAAAGCAACAT
CTGGTGAAAAAGGAATTAGAACCCATAATCTCTGATGACGATATGAAAAATGCAGCTCAAACCGAAGCAACATGTCCAAATTGTTCGTTTGGGAAGGCTGCTTTTATACA
AATACAACTGAGATCAGCTGATGAACCTGCTACAACATTTTACAAGTGCATGAACGAAAACTGTAGACTTAATTGGCGTGAGGATTAAGGGCCAAATTTGTCATTATTGA
TTTTGTATTTTTCTTTTATTTATTTTAACCCATTTTAGACGTGATTTATAGAATAAATTATTATTTTTTACATGATTAGAATCATGAATCTTGTTGGGACCTCAGAATGA
GAATCGTATCATAATTGTACCTCGAATGCTATTTTGTTCTTAGTTTTGCATTTAAAAATAAAATAAAATAAAAAGTGAGGAGAAGAAAAGTTACCAA
Protein sequenceShow/hide protein sequence
MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRLNWRE
D