CuGenDBv2

Gene ID	PI0006508
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr09:15700829..15701407
RNA-Seq Expression	PI0006508
Synteny	PI0006508
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

7.0e-61

76.57

Show/hide

Query:  DRWTKANEKARVDILTSMSDVLSKKHESMVTARKIMDSLQKMFGQPCIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEAVIDEQSQVSFIL
        +RW KANEKAR  IL S+S+VL+KKHESM+TAR+IMDSLQ+MFGQ   QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE N AVIDE SQVSFIL
Subjt:  DRWTKANEKARVDILTSMSDVLSKKHESMVTARKIMDSLQKMFGQPCIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEAVIDEQSQVSFIL

Query:  ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNNGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK  GQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNNGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

7.0e-61

76.57

Show/hide

Query:  DRWTKANEKARVDILTSMSDVLSKKHESMVTARKIMDSLQKMFGQPCIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEAVIDEQSQVSFIL
        +RW KANEKAR  IL S+S+VL+KKHESM+TAR+IMDSLQ+MFGQ   QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE N AVIDE SQVSFIL
Subjt:  DRWTKANEKARVDILTSMSDVLSKKHESMVTARKIMDSLQKMFGQPCIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEAVIDEQSQVSFIL

Query:  ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNNGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK  GQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNNGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]

7.0e-61

76.57

Show/hide

Query:  DRWTKANEKARVDILTSMSDVLSKKHESMVTARKIMDSLQKMFGQPCIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEAVIDEQSQVSFIL
        +RW KANEKAR  IL S+S+VL+KKHESM+TAR+IMDSLQ+MFGQ   QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE N AVIDE SQVSFIL
Subjt:  DRWTKANEKARVDILTSMSDVLSKKHESMVTARKIMDSLQKMFGQPCIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEAVIDEQSQVSFIL

Query:  ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNNGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK  GQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNNGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

7.0e-61

76.57

Show/hide

Query:  DRWTKANEKARVDILTSMSDVLSKKHESMVTARKIMDSLQKMFGQPCIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEAVIDEQSQVSFIL
        +RW KANEKAR  IL S+S+VL+KKHESM+TAR+IMDSLQ+MFGQ   QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE N AVIDE SQVSFIL
Subjt:  DRWTKANEKARVDILTSMSDVLSKKHESMVTARKIMDSLQKMFGQPCIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEAVIDEQSQVSFIL

Query:  ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNNGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK  GQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNNGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

7.0e-61

76.57

Show/hide

Query:  DRWTKANEKARVDILTSMSDVLSKKHESMVTARKIMDSLQKMFGQPCIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEAVIDEQSQVSFIL
        +RW KANEKAR  IL S+S+VL+KKHESM+TAR+IMDSLQ+MFGQ   QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE N AVIDE SQVSFIL
Subjt:  DRWTKANEKARVDILTSMSDVLSKKHESMVTARKIMDSLQKMFGQPCIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEAVIDEQSQVSFIL

Query:  ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNNGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK  GQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNNGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

3.4e-61

76.57

Show/hide

Query:  DRWTKANEKARVDILTSMSDVLSKKHESMVTARKIMDSLQKMFGQPCIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEAVIDEQSQVSFIL
        +RW KANEKAR  IL S+S+VL+KKHESM+TAR+IMDSLQ+MFGQ   QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE N AVIDE SQVSFIL
Subjt:  DRWTKANEKARVDILTSMSDVLSKKHESMVTARKIMDSLQKMFGQPCIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEAVIDEQSQVSFIL

Query:  ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNNGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK  GQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNNGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

A0A5A7TU93 Gag/pol protein

3.4e-61

76.57

Show/hide

Query:  DRWTKANEKARVDILTSMSDVLSKKHESMVTARKIMDSLQKMFGQPCIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEAVIDEQSQVSFIL
        +RW KANEKAR  IL S+S+VL+KKHESM+TAR+IMDSLQ+MFGQ   QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE N AVIDE SQVSFIL
Subjt:  DRWTKANEKARVDILTSMSDVLSKKHESMVTARKIMDSLQKMFGQPCIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEAVIDEQSQVSFIL

Query:  ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNNGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK  GQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNNGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

A0A5A7TWB9 Gag/pol protein

3.4e-61

76.57

Show/hide

Query:  DRWTKANEKARVDILTSMSDVLSKKHESMVTARKIMDSLQKMFGQPCIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEAVIDEQSQVSFIL
        +RW KANEKAR  IL S+S+VL+KKHESM+TAR+IMDSLQ+MFGQ   QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE N AVIDE SQVSFIL
Subjt:  DRWTKANEKARVDILTSMSDVLSKKHESMVTARKIMDSLQKMFGQPCIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEAVIDEQSQVSFIL

Query:  ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNNGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK  GQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNNGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

A0A5A7V4M1 Gag/pol protein

3.4e-61

76.57

Show/hide

Query:  DRWTKANEKARVDILTSMSDVLSKKHESMVTARKIMDSLQKMFGQPCIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEAVIDEQSQVSFIL
        +RW KANEKAR  IL S+S+VL+KKHESM+TAR+IMDSLQ+MFGQ   QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE N AVIDE SQVSFIL
Subjt:  DRWTKANEKARVDILTSMSDVLSKKHESMVTARKIMDSLQKMFGQPCIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEAVIDEQSQVSFIL

Query:  ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNNGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK  GQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNNGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

A0A5D3CPJ6 Gag/pol protein

3.4e-61

76.57

Show/hide

Query:  DRWTKANEKARVDILTSMSDVLSKKHESMVTARKIMDSLQKMFGQPCIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEAVIDEQSQVSFIL
        +RW KANEKAR  IL S+S+VL+KKHESM+TAR+IMDSLQ+MFGQ   QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE N AVIDE SQVSFIL
Subjt:  DRWTKANEKARVDILTSMSDVLSKKHESMVTARKIMDSLQKMFGQPCIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEAVIDEQSQVSFIL

Query:  ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNNGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK
        ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK  GQK GEANVA S ++F +GS+SGTKS PSSSG KK
Subjt:  ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNNGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACCGTCAAGGATGCATAGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCGACATCTTGACCAGTATGTCTGA
CGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTAAGATCATGGACTCCCTCCAGAAGATGTTTGGACAACCGTGCATTCAAATCCGGCACGAGGCTATTAAAT
ACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGAGGCGGTCATTGACGAGCAA
AGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAACGAGTT
GCAGACTTTTCAGTCTCTTATGAAAAATAACGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCAC
CTTCATCTTCTGGGACTAAGAAAATCTAG

mRNA sequence

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Protein sequence

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MSSFPCSKCIPDRQGCIDRWTKANEKARVDILTSMSDVLSKKHESMVTARKIMDSLQKMFGQPCIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEAVIDEQ
SQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNNGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGTKKI

PI0006508 (gene) of Melon (PI 482460) v1 genome