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PI0006522 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006522
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr03:16737382..16737913
RNA-Seq ExpressionPI0006522
SyntenyPI0006522
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025858.1 retrotransposon protein [Cucumis melo var. makuwa]7.5e-3162.04Show/hide
Query:  CSGFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFGRDRATRGRVETLRML-------GYDGFPAYDGNDVEFPTMYSQGLDMSPDD
        CSGF WNDE KCI+ EKEL+DNWV+SH AAKGLLNKPFP+YD+L YVFGRDRAT    ET   +       GYD F   DGN+ +FP +YSQG+D+S DD
Subjt:  CSGFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFGRDRATRGRVETLRML-------GYDGFPAYDGNDVEFPTMYSQGLDMSPDD

Query:  IMTTRPSR
        +  +RPSR
Subjt:  IMTTRPSR

KAA0047371.1 retrotransposon protein [Cucumis melo var. makuwa]5.2e-3259.35Show/hide
Query:  CSGFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFGRDRATRGRVETLRML-------GYDGFPAYDGNDVEFPTMYSQGLDMSPDD
        CSGF WNDE KCIITEKEL+DNW++SH A KGLLNKPFPHYD+L YVF RDRAT    ET   +       GYD F   DGN+ EFP +YSQG+D+S DD
Subjt:  CSGFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFGRDRATRGRVETLRML-------GYDGFPAYDGNDVEFPTMYSQGLDMSPDD

Query:  IMTTRPSRRLRVGQVPAVRRGNG
        +   RPS   RVG      RG G
Subjt:  IMTTRPSRRLRVGQVPAVRRGNG

TYK05082.1 retrotransposon protein [Cucumis melo var. makuwa]4.4e-3161.68Show/hide
Query:  CSGFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFGRDRATRGRVETLRMLGYDGFPAYDGN------DVEFPTMYSQGLDMSPDDI
        CSGF WNDE KCI+ EKEL+D+WVKSH AAKGLLNK F HYD+L YVFG+DRAT GR E+   +G +  P YD        D +FP MYS GL+MSPDD+
Subjt:  CSGFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFGRDRATRGRVETLRMLGYDGFPAYDGN------DVEFPTMYSQGLDMSPDDI

Query:  MTTRPSR
        M TR +R
Subjt:  MTTRPSR

TYK14047.1 retrotransposon protein [Cucumis melo var. makuwa]5.2e-3259.35Show/hide
Query:  CSGFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFGRDRATRGRVETLRML-------GYDGFPAYDGNDVEFPTMYSQGLDMSPDD
        CSGF WNDE KCIITEKEL+DNW++SH A KGLLNKPFPHYD+L YVF RDRAT    ET   +       GYD F   DGN+ EFP +YSQG+D+S DD
Subjt:  CSGFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFGRDRATRGRVETLRML-------GYDGFPAYDGNDVEFPTMYSQGLDMSPDD

Query:  IMTTRPSRRLRVGQVPAVRRGNG
        +   RPS   RVG      RG G
Subjt:  IMTTRPSRRLRVGQVPAVRRGNG

TYK15304.1 retrotransposon protein [Cucumis melo var. makuwa]5.7e-3161.68Show/hide
Query:  CSGFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFGRDRATRGRVETL------RMLGYDGFPAYDGNDVEFPTMYSQGLDMSPDDI
        CSGF WNDE KCI+TEKE++D+WVKSH  AKGLLNK FPHYD+  YVFG+DRAT GR ++         +GYD F A    D +FP MYSQGL+MSPDD+
Subjt:  CSGFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFGRDRATRGRVETL------RMLGYDGFPAYDGNDVEFPTMYSQGLDMSPDDI

Query:  MTTRPSR
        M TR +R
Subjt:  MTTRPSR

TrEMBL top hitse value%identityAlignment
A0A5A7SI64 Retrotransposon protein3.6e-3162.04Show/hide
Query:  CSGFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFGRDRATRGRVETLRML-------GYDGFPAYDGNDVEFPTMYSQGLDMSPDD
        CSGF WNDE KCI+ EKEL+DNWV+SH AAKGLLNKPFP+YD+L YVFGRDRAT    ET   +       GYD F   DGN+ +FP +YSQG+D+S DD
Subjt:  CSGFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFGRDRATRGRVETLRML-------GYDGFPAYDGNDVEFPTMYSQGLDMSPDD

Query:  IMTTRPSR
        +  +RPSR
Subjt:  IMTTRPSR

A0A5A7U1A8 Retrotransposon protein2.5e-3259.35Show/hide
Query:  CSGFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFGRDRATRGRVETLRML-------GYDGFPAYDGNDVEFPTMYSQGLDMSPDD
        CSGF WNDE KCIITEKEL+DNW++SH A KGLLNKPFPHYD+L YVF RDRAT    ET   +       GYD F   DGN+ EFP +YSQG+D+S DD
Subjt:  CSGFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFGRDRATRGRVETLRML-------GYDGFPAYDGNDVEFPTMYSQGLDMSPDD

Query:  IMTTRPSRRLRVGQVPAVRRGNG
        +   RPS   RVG      RG G
Subjt:  IMTTRPSRRLRVGQVPAVRRGNG

A0A5D3C1M0 Retrotransposon protein2.1e-3161.68Show/hide
Query:  CSGFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFGRDRATRGRVETLRMLGYDGFPAYDGN------DVEFPTMYSQGLDMSPDDI
        CSGF WNDE KCI+ EKEL+D+WVKSH AAKGLLNK F HYD+L YVFG+DRAT GR E+   +G +  P YD        D +FP MYS GL+MSPDD+
Subjt:  CSGFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFGRDRATRGRVETLRMLGYDGFPAYDGN------DVEFPTMYSQGLDMSPDDI

Query:  MTTRPSR
        M TR +R
Subjt:  MTTRPSR

A0A5D3CQ47 Retrotransposon protein2.5e-3259.35Show/hide
Query:  CSGFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFGRDRATRGRVETLRML-------GYDGFPAYDGNDVEFPTMYSQGLDMSPDD
        CSGF WNDE KCIITEKEL+DNW++SH A KGLLNKPFPHYD+L YVF RDRAT    ET   +       GYD F   DGN+ EFP +YSQG+D+S DD
Subjt:  CSGFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFGRDRATRGRVETLRML-------GYDGFPAYDGNDVEFPTMYSQGLDMSPDD

Query:  IMTTRPSRRLRVGQVPAVRRGNG
        +   RPS   RVG      RG G
Subjt:  IMTTRPSRRLRVGQVPAVRRGNG

A0A5D3CWJ7 Retrotransposon protein2.8e-3161.68Show/hide
Query:  CSGFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFGRDRATRGRVETL------RMLGYDGFPAYDGNDVEFPTMYSQGLDMSPDDI
        CSGF WNDE KCI+TEKE++D+WVKSH  AKGLLNK FPHYD+  YVFG+DRAT GR ++         +GYD F A    D +FP MYSQGL+MSPDD+
Subjt:  CSGFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFGRDRATRGRVETL------RMLGYDGFPAYDGNDVEFPTMYSQGLDMSPDDI

Query:  MTTRPSR
        M TR +R
Subjt:  MTTRPSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G02210.1 unknown protein1.5e-0529.79Show/hide
Query:  GFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFG
        GF W++E + +  +  ++ +++K+H  A+  + +P P+Y DLC + G
Subjt:  GFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFG

AT4G02210.2 unknown protein1.5e-0529.79Show/hide
Query:  GFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFG
        GF W++E + +  +  ++ +++K+H  A+  + +P P+Y DLC + G
Subjt:  GFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCAGTGGGTTCGATTGGAATGATGAGCTGAAATGCATTATTACCGAGAAAGAGTTGTACGACAACTGGGTGAAGAGTCATGCAGCCGCAAAGGGCCTCCTAAACAA
ACCCTTTCCCCATTACGACGACCTCTGTTACGTCTTCGGAAGAGATCGTGCGACAAGAGGTCGTGTTGAAACTTTGCGGATGTTAGGGTACGATGGATTTCCTGCTTATG
ATGGGAACGATGTGGAGTTCCCCACGATGTACAGTCAGGGACTGGACATGTCACCTGATGACATAATGACCACACGACCCAGTCGGCGTTTGAGGGTAGGGCAGGTTCCA
GCGGTTCGAAGAGGAAACGGGAGGGCAGGCGTCCGAGGCGGCAGAAATTATTCGCAGTGCCATGGAATATGCGAACGACCAGCTAAATGCCATAGCAGAATGGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGCAGTGGGTTCGATTGGAATGATGAGCTGAAATGCATTATTACCGAGAAAGAGTTGTACGACAACTGGGTGAAGAGTCATGCAGCCGCAAAGGGCCTCCTAAACAA
ACCCTTTCCCCATTACGACGACCTCTGTTACGTCTTCGGAAGAGATCGTGCGACAAGAGGTCGTGTTGAAACTTTGCGGATGTTAGGGTACGATGGATTTCCTGCTTATG
ATGGGAACGATGTGGAGTTCCCCACGATGTACAGTCAGGGACTGGACATGTCACCTGATGACATAATGACCACACGACCCAGTCGGCGTTTGAGGGTAGGGCAGGTTCCA
GCGGTTCGAAGAGGAAACGGGAGGGCAGGCGTCCGAGGCGGCAGAAATTATTCGCAGTGCCATGGAATATGCGAACGACCAGCTAAATGCCATAGCAGAATGGCCTAA
Protein sequenceShow/hide protein sequence
MCSGFDWNDELKCIITEKELYDNWVKSHAAAKGLLNKPFPHYDDLCYVFGRDRATRGRVETLRMLGYDGFPAYDGNDVEFPTMYSQGLDMSPDDIMTTRPSRRLRVGQVP
AVRRGNGRAGVRGGRNYSQCHGICERPAKCHSRMA