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PI0006538 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006538
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr06:20787669..20788354
RNA-Seq ExpressionPI0006538
SyntenyPI0006538
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0032259 - methylation (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004386 - helicase activity (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016301 - kinase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056581.1 reverse transcriptase [Cucumis melo var. makuwa]2.9e-5766.67Show/hide
Query:  MAGRRGGIPATWDKREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHEKFDRVMDTLETLTRRMDGLPAPVRIEANVNNDRNDGNRGGRRARRNFRTLPNQ
        MAG+RG IPA WD REQ+E EEI  LSPRTSTV LLAVEDSLGDLH+KFD++MD+LETL +RMDGL AP RIEANV NDRNDGN+GGR+ARRN R LPNQ
Subjt:  MAGRRGGIPATWDKREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHEKFDRVMDTLETLTRRMDGLPAPVRIEANVNNDRNDGNRGGRRARRNFRTLPNQ

Query:  RNDQRMRPMENPLRYADDDSMEEYGAWQNGQECDSSSGDEQGNIWNDNGDIRMRRVYRGREARREVHHDYKMKIDLPTYD
        +ND+  RP E PL                        GDEQGNIWNDNGD +MR+ YRG+EARREVHHDYKMKIDLP ++
Subjt:  RNDQRMRPMENPLRYADDDSMEEYGAWQNGQECDSSSGDEQGNIWNDNGDIRMRRVYRGREARREVHHDYKMKIDLPTYD

KAA0056746.1 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [Cucumis melo var. makuwa]4.2e-5684.14Show/hide
Query:  PATWDKREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHEKFDRVMDTLETLTRRMDGLPAPVRIEANVNNDR--NDGNRGGRRARRNFRTLPNQRNDQRM
        P    + EQE+VEEI TLSPRTSTV LLA EDSLGDLHEKFDRVMDTLETLTRRMD L AP RIEANVNN+R  NDGNRGGRRARRNFR LPNQR+DQR 
Subjt:  PATWDKREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHEKFDRVMDTLETLTRRMDGLPAPVRIEANVNNDR--NDGNRGGRRARRNFRTLPNQRNDQRM

Query:  RPMENPLRYADDDSMEEYGAWQNGQECDSSSGDEQGNIWNDNGDI
        RPMENPLRYADD+SMEEY A QNGQECDSSS DEQGNIWNDNGDI
Subjt:  RPMENPLRYADDDSMEEYGAWQNGQECDSSSGDEQGNIWNDNGDI

KAA0057344.1 RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]1.1e-7279.44Show/hide
Query:  MAGRRGGIPATWDKREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHEKFDRVMDTLETLTRRMDGLPAPVRIEANVNNDRNDGNRGGRRARRNFRTLPNQ
        MA RRGGIPA  D REQEEVE IATLSPRTSTVRLLAV+D LGDLHEKF+R+MD LETLT+RMDGLPAP RIEAN+N DRN+ NRGGRRA+RNF  +PNQ
Subjt:  MAGRRGGIPATWDKREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHEKFDRVMDTLETLTRRMDGLPAPVRIEANVNNDRNDGNRGGRRARRNFRTLPNQ

Query:  RNDQRMRPMENPLRYADDDSMEEYGAWQNGQECDSSSGDEQGNIWNDNGDIRMRRVYRGREARREVHHDYKMKIDLPTYD
        RNDQ  RPME PLRYADDDS+E+  AWQN QE DSSSGDE+GNIW+DNGDI+MR+ YRG EARREVHHDYKMK+DLPTY+
Subjt:  RNDQRMRPMENPLRYADDDSMEEYGAWQNGQECDSSSGDEQGNIWNDNGDIRMRRVYRGREARREVHHDYKMKIDLPTYD

TYK11204.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-8188.27Show/hide
Query:  MAGRRGGIPATWDKREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHEKFDRVMDTLETLTRRMDGLPAPVRIEANVNNDRNDGNRGGRRARRNFRTLPNQ
        MAGRR GIPAT D REQEEVEE A LSPRTSTV  LAVEDSLGDLHEKFDRVMDTLETLTRRMDGLPA  RIEAN NNDRNDGNRGGRRARRNFR LPNQ
Subjt:  MAGRRGGIPATWDKREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHEKFDRVMDTLETLTRRMDGLPAPVRIEANVNNDRNDGNRGGRRARRNFRTLPNQ

Query:  RNDQRMRPMENPLRYADDDSMEEYGAWQNGQECDSSSGDEQGNIWNDNGDIRMRRVYRGREARREVHHDYKMKIDLPTY
        RNDQR RPMENPLRYAD+DSMEEY AWQNGQECDSSS DEQGNIWNDN D++MR+VYRG EA+REVHHDYKMKIDLPTY
Subjt:  RNDQRMRPMENPLRYADDDSMEEYGAWQNGQECDSSSGDEQGNIWNDNGDIRMRRVYRGREARREVHHDYKMKIDLPTY

TYK21018.1 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [Cucumis melo var. makuwa]4.2e-5684.14Show/hide
Query:  PATWDKREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHEKFDRVMDTLETLTRRMDGLPAPVRIEANVNNDR--NDGNRGGRRARRNFRTLPNQRNDQRM
        P    + EQE+VEEI TLSPRTSTV LLA EDSLGDLHEKFDRVMDTLETLTRRMD L AP RIEANVNN+R  NDGNRGGRRARRNFR LPNQR+DQR 
Subjt:  PATWDKREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHEKFDRVMDTLETLTRRMDGLPAPVRIEANVNNDR--NDGNRGGRRARRNFRTLPNQRNDQRM

Query:  RPMENPLRYADDDSMEEYGAWQNGQECDSSSGDEQGNIWNDNGDI
        RPMENPLRYADD+SMEEY A QNGQECDSSS DEQGNIWNDNGDI
Subjt:  RPMENPLRYADDDSMEEYGAWQNGQECDSSSGDEQGNIWNDNGDI

TrEMBL top hitse value%identityAlignment
A0A5A7UQ86 RNA-directed DNA polymerase-like protein5.3e-7379.44Show/hide
Query:  MAGRRGGIPATWDKREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHEKFDRVMDTLETLTRRMDGLPAPVRIEANVNNDRNDGNRGGRRARRNFRTLPNQ
        MA RRGGIPA  D REQEEVE IATLSPRTSTVRLLAV+D LGDLHEKF+R+MD LETLT+RMDGLPAP RIEAN+N DRN+ NRGGRRA+RNF  +PNQ
Subjt:  MAGRRGGIPATWDKREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHEKFDRVMDTLETLTRRMDGLPAPVRIEANVNNDRNDGNRGGRRARRNFRTLPNQ

Query:  RNDQRMRPMENPLRYADDDSMEEYGAWQNGQECDSSSGDEQGNIWNDNGDIRMRRVYRGREARREVHHDYKMKIDLPTYD
        RNDQ  RPME PLRYADDDS+E+  AWQN QE DSSSGDE+GNIW+DNGDI+MR+ YRG EARREVHHDYKMK+DLPTY+
Subjt:  RNDQRMRPMENPLRYADDDSMEEYGAWQNGQECDSSSGDEQGNIWNDNGDIRMRRVYRGREARREVHHDYKMKIDLPTYD

A0A5A7UR03 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase2.0e-5684.14Show/hide
Query:  PATWDKREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHEKFDRVMDTLETLTRRMDGLPAPVRIEANVNNDR--NDGNRGGRRARRNFRTLPNQRNDQRM
        P    + EQE+VEEI TLSPRTSTV LLA EDSLGDLHEKFDRVMDTLETLTRRMD L AP RIEANVNN+R  NDGNRGGRRARRNFR LPNQR+DQR 
Subjt:  PATWDKREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHEKFDRVMDTLETLTRRMDGLPAPVRIEANVNNDR--NDGNRGGRRARRNFRTLPNQRNDQRM

Query:  RPMENPLRYADDDSMEEYGAWQNGQECDSSSGDEQGNIWNDNGDI
        RPMENPLRYADD+SMEEY A QNGQECDSSS DEQGNIWNDNGDI
Subjt:  RPMENPLRYADDDSMEEYGAWQNGQECDSSSGDEQGNIWNDNGDI

A0A5D3CJ99 Reverse transcriptase1.1e-8188.27Show/hide
Query:  MAGRRGGIPATWDKREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHEKFDRVMDTLETLTRRMDGLPAPVRIEANVNNDRNDGNRGGRRARRNFRTLPNQ
        MAGRR GIPAT D REQEEVEE A LSPRTSTV  LAVEDSLGDLHEKFDRVMDTLETLTRRMDGLPA  RIEAN NNDRNDGNRGGRRARRNFR LPNQ
Subjt:  MAGRRGGIPATWDKREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHEKFDRVMDTLETLTRRMDGLPAPVRIEANVNNDRNDGNRGGRRARRNFRTLPNQ

Query:  RNDQRMRPMENPLRYADDDSMEEYGAWQNGQECDSSSGDEQGNIWNDNGDIRMRRVYRGREARREVHHDYKMKIDLPTY
        RNDQR RPMENPLRYAD+DSMEEY AWQNGQECDSSS DEQGNIWNDN D++MR+VYRG EA+REVHHDYKMKIDLPTY
Subjt:  RNDQRMRPMENPLRYADDDSMEEYGAWQNGQECDSSSGDEQGNIWNDNGDIRMRRVYRGREARREVHHDYKMKIDLPTY

A0A5D3DBZ2 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase2.0e-5684.14Show/hide
Query:  PATWDKREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHEKFDRVMDTLETLTRRMDGLPAPVRIEANVNNDR--NDGNRGGRRARRNFRTLPNQRNDQRM
        P    + EQE+VEEI TLSPRTSTV LLA EDSLGDLHEKFDRVMDTLETLTRRMD L AP RIEANVNN+R  NDGNRGGRRARRNFR LPNQR+DQR 
Subjt:  PATWDKREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHEKFDRVMDTLETLTRRMDGLPAPVRIEANVNNDR--NDGNRGGRRARRNFRTLPNQRNDQRM

Query:  RPMENPLRYADDDSMEEYGAWQNGQECDSSSGDEQGNIWNDNGDI
        RPMENPLRYADD+SMEEY A QNGQECDSSS DEQGNIWNDNGDI
Subjt:  RPMENPLRYADDDSMEEYGAWQNGQECDSSSGDEQGNIWNDNGDI

A0A5D3DKV9 Reverse transcriptase1.4e-5766.67Show/hide
Query:  MAGRRGGIPATWDKREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHEKFDRVMDTLETLTRRMDGLPAPVRIEANVNNDRNDGNRGGRRARRNFRTLPNQ
        MAG+RG IPA WD REQ+E EEI  LSPRTSTV LLAVEDSLGDLH+KFD++MD+LETL +RMDGL AP RIEANV NDRNDGN+GGR+ARRN R LPNQ
Subjt:  MAGRRGGIPATWDKREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHEKFDRVMDTLETLTRRMDGLPAPVRIEANVNNDRNDGNRGGRRARRNFRTLPNQ

Query:  RNDQRMRPMENPLRYADDDSMEEYGAWQNGQECDSSSGDEQGNIWNDNGDIRMRRVYRGREARREVHHDYKMKIDLPTYD
        +ND+  RP E PL                        GDEQGNIWNDNGD +MR+ YRG+EARREVHHDYKMKIDLP ++
Subjt:  RNDQRMRPMENPLRYADDDSMEEYGAWQNGQECDSSSGDEQGNIWNDNGDIRMRRVYRGREARREVHHDYKMKIDLPTYD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGGCCGAAGAGGAGGAATCCCTGCCACGTGGGACAAACGTGAGCAAGAAGAGGTGGAGGAGATCGCCACCCTCTCTCCAAGAACATCCACGGTACGCTTGCTGGC
CGTCGAAGACTCTTTGGGAGATTTACACGAAAAATTTGATAGAGTAATGGATACTTTGGAGACACTGACTCGAAGGATGGACGGACTACCGGCTCCAGTAAGAATTGAAG
CCAACGTAAATAATGATCGGAACGACGGAAACAGAGGAGGCCGACGAGCTCGAAGGAATTTTAGAACTTTGCCCAATCAAAGGAATGATCAAAGAATGAGGCCAATGGAG
AATCCGCTGCGATATGCCGACGATGATTCAATGGAAGAATATGGAGCTTGGCAAAATGGGCAAGAATGTGATTCTTCCAGTGGTGATGAGCAAGGAAATATTTGGAATGA
TAATGGAGATATTCGAATGAGACGAGTTTATAGAGGACGTGAAGCACGAAGGGAAGTTCATCATGACTATAAGATGAAAATTGATCTTCCAACCTATGATGAAAGTACAC
TTGGTGGCCCTAAAGCTACGTGGAGGAGCTTCGACATGGTGGGATCAGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGGCCGAAGAGGAGGAATCCCTGCCACGTGGGACAAACGTGAGCAAGAAGAGGTGGAGGAGATCGCCACCCTCTCTCCAAGAACATCCACGGTACGCTTGCTGGC
CGTCGAAGACTCTTTGGGAGATTTACACGAAAAATTTGATAGAGTAATGGATACTTTGGAGACACTGACTCGAAGGATGGACGGACTACCGGCTCCAGTAAGAATTGAAG
CCAACGTAAATAATGATCGGAACGACGGAAACAGAGGAGGCCGACGAGCTCGAAGGAATTTTAGAACTTTGCCCAATCAAAGGAATGATCAAAGAATGAGGCCAATGGAG
AATCCGCTGCGATATGCCGACGATGATTCAATGGAAGAATATGGAGCTTGGCAAAATGGGCAAGAATGTGATTCTTCCAGTGGTGATGAGCAAGGAAATATTTGGAATGA
TAATGGAGATATTCGAATGAGACGAGTTTATAGAGGACGTGAAGCACGAAGGGAAGTTCATCATGACTATAAGATGAAAATTGATCTTCCAACCTATGATGAAAGTACAC
TTGGTGGCCCTAAAGCTACGTGGAGGAGCTTCGACATGGTGGGATCAGCTTGA
Protein sequenceShow/hide protein sequence
MAGRRGGIPATWDKREQEEVEEIATLSPRTSTVRLLAVEDSLGDLHEKFDRVMDTLETLTRRMDGLPAPVRIEANVNNDRNDGNRGGRRARRNFRTLPNQRNDQRMRPME
NPLRYADDDSMEEYGAWQNGQECDSSSGDEQGNIWNDNGDIRMRRVYRGREARREVHHDYKMKIDLPTYDESTLGGPKATWRSFDMVGSA