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PI0006546 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006546
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr01:8218007..8218171
RNA-Seq ExpressionPI0006546
SyntenyPI0006546
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048281.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-1474.07Show/hide
Query:  MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ
        MT+ D+ ++ D+ DSTHATTA DDIHYIETSNEWS WRDDL EEMF+EWELR+Q
Subjt:  MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ
KAA0054148.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-1474.07Show/hide
Query:  MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ
        MT+ D+ ++ D+ DSTHATTA DDIHYIETSNEWS WRDDL EEMF+EWELR+Q
Subjt:  MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ
KAA0054554.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-1474.07Show/hide
Query:  MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ
        MT+ D+ ++ D+ DSTHATTA DDIHYIETSNEWS WRDDL EEMF+EWELR+Q
Subjt:  MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ
KAA0065286.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-1474.07Show/hide
Query:  MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ
        MT+ D+ ++ D+ DSTHATTA DDIHYIETSNEWS WRDDL EEMF+EWELR+Q
Subjt:  MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ
KAA0068124.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-1474.07Show/hide
Query:  MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ
        MT+ D+ ++ D+ DSTHATTA DDIHYIETSNEWS WRDDL EEMF+EWELR+Q
Subjt:  MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ
TrEMBL top hitse value%identityAlignment
A0A5A7TWH8 Retrotransposon protein1.1e-1474.07Show/hide
Query:  MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ
        MT+ D+ ++ D+ DSTHATTA DDIHYIETSNEWS WRDDL EEMF+EWELR+Q
Subjt:  MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ
A0A5A7UGH9 Retrotransposon protein1.1e-1474.07Show/hide
Query:  MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ
        MT+ D+ ++ D+ DSTHATTA DDIHYIETSNEWS WRDDL EEMF+EWELR+Q
Subjt:  MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ
A0A5A7VG29 Retrotransposon protein1.1e-1474.07Show/hide
Query:  MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ
        MT+ D+ ++ D+ DSTHATTA DDIHYIETSNEWS WRDDL EEMF+EWELR+Q
Subjt:  MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ
A0A5A7VHB0 Retrotransposon protein1.1e-1474.07Show/hide
Query:  MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ
        MT+ D+ ++ D+ DSTHATTA DDIHYIETSNEWS WRDDL EEMF+EWELR+Q
Subjt:  MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ
A0A5D3D9Z3 Retrotransposon protein1.1e-1474.07Show/hide
Query:  MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ
        MT+ D+ ++ D+ DSTHATTA DDIHYIETSNEWS WRDDL EEMF+EWELR+Q
Subjt:  MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGAGCGTTGATGTGACAGAGGACTACGACAAAGGTGATTCGACACACGCAACAACTGCAGGTGACGACATTCACTACATCGAAACGTCCAATGAATGGAGTCATTG
GAGGGATGATCTGGTCGAAGAGATGTTCAGTGAATGGGAGTTACGTGATCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACGAGCGTTGATGTGACAGAGGACTACGACAAAGGTGATTCGACACACGCAACAACTGCAGGTGACGACATTCACTACATCGAAACGTCCAATGAATGGAGTCATTG
GAGGGATGATCTGGTCGAAGAGATGTTCAGTGAATGGGAGTTACGTGATCAGTAG
Protein sequenceShow/hide protein sequence
MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ