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PI0006548 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006548
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr08:3154745..3155496
RNA-Seq ExpressionPI0006548
SyntenyPI0006548
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]3.3e-6771.28Show/hide
Query:  KGLLHKSFPYYDDLSYVFSRDRATRARAETFADVGSNVPNSFNDGVPLGDVHDEDISTMYSQGVDMSPDDMLGTHGGRSSERRNCSSGSKRKWCDQHNEA
        KGLLHKSFPYYDDLSYVF  D AT A +ETFAD GSNV N FNDGVPLGD H++DI T+YSQGV MS D++ G   G++SERRN SSGSKRK   +H E 
Subjt:  KGLLHKSFPYYDDLSYVFSRDRATRARAETFADVGSNVPNSFNDGVPLGDVHDEDISTMYSQGVDMSPDDMLGTHGGRSSERRNCSSGSKRKWCDQHNEA

Query:  VEVIRNTMDFANNQLKAIVDWPKEKRATEVKLRAEVVKQLQDILELRSRDRVKLMRIIFRSVDDTQGFLSVPTKLKLEYCNILLEENV
        VEVI +  +F N+QLK I DWPKEKRATEV+LR EVVKQLQDI +LRS+DR KLM+I+FRSV+  +GFLS+PTKLKLEYCNILLE NV
Subjt:  VEVIRNTMDFANNQLKAIVDWPKEKRATEVKLRAEVVKQLQDILELRSRDRVKLMRIIFRSVDDTQGFLSVPTKLKLEYCNILLEENV

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.3e-6871.35Show/hide
Query:  KGLLHKSFPYYDDLSYVFSRDRATRARAETFADVGSNVPNSFNDGVPLGDVHDEDISTMYSQGVDMSPDDMLGTHGGRSSERRNCSSGSKRKWCDQHNEA
        K LLHKSFPYYDDL YVF +DRATRAR+ETFADVGSNVPN FN  VPL D HD+DI  MYSQGV MSPD+M G   G++SER+NCSSGSKRK   +H E 
Subjt:  KGLLHKSFPYYDDLSYVFSRDRATRARAETFADVGSNVPNSFNDGVPLGDVHDEDISTMYSQGVDMSPDDMLGTHGGRSSERRNCSSGSKRKWCDQHNEA

Query:  VEVIRNTMDFANNQLKAIVDWPKEKRATEVKLRAEVVKQLQDILELRSRDRVKLMRIIFRSVDDTQGFLSVPTKLKLEYCNILLE
        VEVI++ ++F N+QLKAI +WPKEKRATEV+LRAEV+KQLQDI EL+SRDR KL++I+FRSV+  +GFLS+PT+ KLEYCNILL+
Subjt:  VEVIRNTMDFANNQLKAIVDWPKEKRATEVKLRAEVVKQLQDILELRSRDRVKLMRIIFRSVDDTQGFLSVPTKLKLEYCNILLE

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-6670.81Show/hide
Query:  KGLLHKSFPYYDDLSYVFSRDRATRARAETFADVGSNVPNSFNDGVPLGDVHDEDISTMYSQGVDMSPDDMLGTHGGRSSERRNCSSGSKRKWCDQHNEA
        KGLL+KSFPYYDD+SYVF +D+AT AR+ETFADVGSN+PN FNDGVPLGD H EDI TMYSQGV MS D+M GT  G++SERRNCSS SKRK   QH E 
Subjt:  KGLLHKSFPYYDDLSYVFSRDRATRARAETFADVGSNVPNSFNDGVPLGDVHDEDISTMYSQGVDMSPDDMLGTHGGRSSERRNCSSGSKRKWCDQHNEA

Query:  VEVIRNTMDFANNQLKAIVDWPKEKRATEVKLRAEVVKQLQDILELRSRDRVKLMRIIFRSVDDTQGFLSVPTKLKLEYCNILLE
        VEVIR+ M F N+QLKAI DW KEKRA +V+LRA VVKQLQDI +L++RDR K+++I+F SV+  +GFLS+PT+LKLEYCN+LLE
Subjt:  VEVIRNTMDFANNQLKAIVDWPKEKRATEVKLRAEVVKQLQDILELRSRDRVKLMRIIFRSVDDTQGFLSVPTKLKLEYCNILLE

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]2.2e-7163.68Show/hide
Query:  MRGPSCSGFGWNEEYQCIIVECELFD--------TKGLLHKSFPYYDDLSYVFSRDRATRARAETFADVGSNVPNSFNDGVPLGDVHDEDISTMYSQGVD
        MRGPSCSGFGWNEE+QCII E +LFD        TKGLLHKSFPYYDDLSYVF +DRAT AR+ETF DVGSNVPN FND +PLGD HDEDI TMYSQGV 
Subjt:  MRGPSCSGFGWNEEYQCIIVECELFD--------TKGLLHKSFPYYDDLSYVFSRDRATRARAETFADVGSNVPNSFNDGVPLGDVHDEDISTMYSQGVD

Query:  MSPDDMLGTHGGRSSERRNCSSGSKRKWCDQHNEAVEVIRNTMDFANNQLKAIVDWPKEKRATEVKLRAEVVKQLQDILELRSRDRVKLMRIIFRSVDDT
        +SPD+M G                            EVIR+ M+F N QLKAI DW KEKRA E+++RA+VVKQLQDI ELRS+ R KLM+I+FRS++  
Subjt:  MSPDDMLGTHGGRSSERRNCSSGSKRKWCDQHNEAVEVIRNTMDFANNQLKAIVDWPKEKRATEVKLRAEVVKQLQDILELRSRDRVKLMRIIFRSVDDT

Query:  QGFLSVPTKLKLEYCNILLEENV
         GFLS+PT+LKLEYCNILL+ NV
Subjt:  QGFLSVPTKLKLEYCNILLEENV

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]2.1e-8269.96Show/hide
Query:  MRGPSCSGFGWNEEYQCIIVECELFDT--------KGLLHKSFPYYDDLSYVFSRDRATRARAETFADVGSNVPNSFNDGVPLGDVHDEDISTMYSQGVD
        MRGPSCSGFGWNEE+QCII E +LFD+        KGLLHKSFPYYDDLSYVF +DRAT AR+ETF +VGSNV N FND +PLGD HDEDI TMYSQGV 
Subjt:  MRGPSCSGFGWNEEYQCIIVECELFDT--------KGLLHKSFPYYDDLSYVFSRDRATRARAETFADVGSNVPNSFNDGVPLGDVHDEDISTMYSQGVD

Query:  MSPDDMLGTHGGRSSERRNCSSGSKRKWCDQHNEAVEVIRNTMDFANNQLKAIVDWPKEKRATEVKLRAEVVKQLQDILELRSRDRVKLMRIIFRSVDDT
        MSPD+M G   G++SERRNCSS SKRK   +  E VEVIR+ M+F N QLKAI DWPKEKRA EV++RA+VVKQLQDI +LRS+DR KLM+I+FRS++  
Subjt:  MSPDDMLGTHGGRSSERRNCSSGSKRKWCDQHNEAVEVIRNTMDFANNQLKAIVDWPKEKRATEVKLRAEVVKQLQDILELRSRDRVKLMRIIFRSVDDT

Query:  QGFLSVPTKLKLEYCNILLEENV
        +GFLS+PT+LKLEYCNILL+  V
Subjt:  QGFLSVPTKLKLEYCNILLEENV

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859531.0e-8269.96Show/hide
Query:  MRGPSCSGFGWNEEYQCIIVECELFDT--------KGLLHKSFPYYDDLSYVFSRDRATRARAETFADVGSNVPNSFNDGVPLGDVHDEDISTMYSQGVD
        MRGPSCSGFGWNEE+QCII E +LFD+        KGLLHKSFPYYDDLSYVF +DRAT AR+ETF +VGSNV N FND +PLGD HDEDI TMYSQGV 
Subjt:  MRGPSCSGFGWNEEYQCIIVECELFDT--------KGLLHKSFPYYDDLSYVFSRDRATRARAETFADVGSNVPNSFNDGVPLGDVHDEDISTMYSQGVD

Query:  MSPDDMLGTHGGRSSERRNCSSGSKRKWCDQHNEAVEVIRNTMDFANNQLKAIVDWPKEKRATEVKLRAEVVKQLQDILELRSRDRVKLMRIIFRSVDDT
        MSPD+M G   G++SERRNCSS SKRK   +  E VEVIR+ M+F N QLKAI DWPKEKRA EV++RA+VVKQLQDI +LRS+DR KLM+I+FRS++  
Subjt:  MSPDDMLGTHGGRSSERRNCSSGSKRKWCDQHNEAVEVIRNTMDFANNQLKAIVDWPKEKRATEVKLRAEVVKQLQDILELRSRDRVKLMRIIFRSVDDT

Query:  QGFLSVPTKLKLEYCNILLEENV
        +GFLS+PT+LKLEYCNILL+  V
Subjt:  QGFLSVPTKLKLEYCNILLEENV

A0A5A7SQU2 Putative nuclease HARBI11.1e-6871.35Show/hide
Query:  KGLLHKSFPYYDDLSYVFSRDRATRARAETFADVGSNVPNSFNDGVPLGDVHDEDISTMYSQGVDMSPDDMLGTHGGRSSERRNCSSGSKRKWCDQHNEA
        K LLHKSFPYYDDL YVF +DRATRAR+ETFADVGSNVPN FN  VPL D HD+DI  MYSQGV MSPD+M G   G++SER+NCSSGSKRK   +H E 
Subjt:  KGLLHKSFPYYDDLSYVFSRDRATRARAETFADVGSNVPNSFNDGVPLGDVHDEDISTMYSQGVDMSPDDMLGTHGGRSSERRNCSSGSKRKWCDQHNEA

Query:  VEVIRNTMDFANNQLKAIVDWPKEKRATEVKLRAEVVKQLQDILELRSRDRVKLMRIIFRSVDDTQGFLSVPTKLKLEYCNILLE
        VEVI++ ++F N+QLKAI +WPKEKRATEV+LRAEV+KQLQDI EL+SRDR KL++I+FRSV+  +GFLS+PT+ KLEYCNILL+
Subjt:  VEVIRNTMDFANNQLKAIVDWPKEKRATEVKLRAEVVKQLQDILELRSRDRVKLMRIIFRSVDDTQGFLSVPTKLKLEYCNILLE

A0A5A7U0H7 Retrotransposon protein1.0e-8269.96Show/hide
Query:  MRGPSCSGFGWNEEYQCIIVECELFDT--------KGLLHKSFPYYDDLSYVFSRDRATRARAETFADVGSNVPNSFNDGVPLGDVHDEDISTMYSQGVD
        MRGPSCSGFGWNEE+QCII E +LFD+        KGLLHKSFPYYDDLSYVF +DRAT AR+ETF +VGSNV N FND +PLGD HDEDI TMYSQGV 
Subjt:  MRGPSCSGFGWNEEYQCIIVECELFDT--------KGLLHKSFPYYDDLSYVFSRDRATRARAETFADVGSNVPNSFNDGVPLGDVHDEDISTMYSQGVD

Query:  MSPDDMLGTHGGRSSERRNCSSGSKRKWCDQHNEAVEVIRNTMDFANNQLKAIVDWPKEKRATEVKLRAEVVKQLQDILELRSRDRVKLMRIIFRSVDDT
        MSPD+M G   G++SERRNCSS SKRK   +  E VEVIR+ M+F N QLKAI DWPKEKRA EV++RA+VVKQLQDI +LRS+DR KLM+I+FRS++  
Subjt:  MSPDDMLGTHGGRSSERRNCSSGSKRKWCDQHNEAVEVIRNTMDFANNQLKAIVDWPKEKRATEVKLRAEVVKQLQDILELRSRDRVKLMRIIFRSVDDT

Query:  QGFLSVPTKLKLEYCNILLEENV
        +GFLS+PT+LKLEYCNILL+  V
Subjt:  QGFLSVPTKLKLEYCNILLEENV

A0A5D3BZU3 Retrotransposon protein1.6e-6771.28Show/hide
Query:  KGLLHKSFPYYDDLSYVFSRDRATRARAETFADVGSNVPNSFNDGVPLGDVHDEDISTMYSQGVDMSPDDMLGTHGGRSSERRNCSSGSKRKWCDQHNEA
        KGLLHKSFPYYDDLSYVF  D AT A +ETFAD GSNV N FNDGVPLGD H++DI T+YSQGV MS D++ G   G++SERRN SSGSKRK   +H E 
Subjt:  KGLLHKSFPYYDDLSYVFSRDRATRARAETFADVGSNVPNSFNDGVPLGDVHDEDISTMYSQGVDMSPDDMLGTHGGRSSERRNCSSGSKRKWCDQHNEA

Query:  VEVIRNTMDFANNQLKAIVDWPKEKRATEVKLRAEVVKQLQDILELRSRDRVKLMRIIFRSVDDTQGFLSVPTKLKLEYCNILLEENV
        VEVI +  +F N+QLK I DWPKEKRATEV+LR EVVKQLQDI +LRS+DR KLM+I+FRSV+  +GFLS+PTKLKLEYCNILLE NV
Subjt:  VEVIRNTMDFANNQLKAIVDWPKEKRATEVKLRAEVVKQLQDILELRSRDRVKLMRIIFRSVDDTQGFLSVPTKLKLEYCNILLEENV

A0A5D3DG22 Retrotransposon protein1.1e-7163.68Show/hide
Query:  MRGPSCSGFGWNEEYQCIIVECELFD--------TKGLLHKSFPYYDDLSYVFSRDRATRARAETFADVGSNVPNSFNDGVPLGDVHDEDISTMYSQGVD
        MRGPSCSGFGWNEE+QCII E +LFD        TKGLLHKSFPYYDDLSYVF +DRAT AR+ETF DVGSNVPN FND +PLGD HDEDI TMYSQGV 
Subjt:  MRGPSCSGFGWNEEYQCIIVECELFD--------TKGLLHKSFPYYDDLSYVFSRDRATRARAETFADVGSNVPNSFNDGVPLGDVHDEDISTMYSQGVD

Query:  MSPDDMLGTHGGRSSERRNCSSGSKRKWCDQHNEAVEVIRNTMDFANNQLKAIVDWPKEKRATEVKLRAEVVKQLQDILELRSRDRVKLMRIIFRSVDDT
        +SPD+M G                            EVIR+ M+F N QLKAI DW KEKRA E+++RA+VVKQLQDI ELRS+ R KLM+I+FRS++  
Subjt:  MSPDDMLGTHGGRSSERRNCSSGSKRKWCDQHNEAVEVIRNTMDFANNQLKAIVDWPKEKRATEVKLRAEVVKQLQDILELRSRDRVKLMRIIFRSVDDT

Query:  QGFLSVPTKLKLEYCNILLEENV
         GFLS+PT+LKLEYCNILL+ NV
Subjt:  QGFLSVPTKLKLEYCNILLEENV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGGGCCATCCTGTAGTGGGTTTGGATGGAATGAAGAATATCAATGCATCATCGTAGAATGCGAGTTGTTTGATACCAAAGGACTTTTACACAAATCATTTCCATA
TTATGACGATCTGTCGTATGTGTTCAGCAGAGATCGGGCAACAAGAGCACGTGCAGAGACATTTGCTGACGTGGGATCTAATGTGCCAAACAGTTTTAATGACGGTGTTC
CACTTGGTGATGTACATGATGAAGACATCTCGACGATGTATAGCCAAGGAGTGGATATGTCCCCAGATGACATGTTAGGAACACACGGAGGTCGATCAAGTGAAAGACGA
AATTGTTCAAGTGGGAGTAAGAGAAAATGGTGTGATCAACATAATGAAGCAGTGGAGGTGATCAGGAATACAATGGATTTTGCAAACAATCAATTGAAGGCAATTGTAGA
TTGGCCAAAAGAAAAGCGTGCAACTGAGGTAAAATTGCGTGCTGAAGTCGTGAAACAACTGCAAGATATCCTTGAACTACGGAGTCGAGATAGGGTAAAGCTTATGCGAA
TCATATTTCGTAGTGTGGATGACACACAGGGATTCTTGTCGGTCCCAACGAAACTTAAATTGGAGTATTGCAATATTCTCTTAGAAGAAAATGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGGGCCATCCTGTAGTGGGTTTGGATGGAATGAAGAATATCAATGCATCATCGTAGAATGCGAGTTGTTTGATACCAAAGGACTTTTACACAAATCATTTCCATA
TTATGACGATCTGTCGTATGTGTTCAGCAGAGATCGGGCAACAAGAGCACGTGCAGAGACATTTGCTGACGTGGGATCTAATGTGCCAAACAGTTTTAATGACGGTGTTC
CACTTGGTGATGTACATGATGAAGACATCTCGACGATGTATAGCCAAGGAGTGGATATGTCCCCAGATGACATGTTAGGAACACACGGAGGTCGATCAAGTGAAAGACGA
AATTGTTCAAGTGGGAGTAAGAGAAAATGGTGTGATCAACATAATGAAGCAGTGGAGGTGATCAGGAATACAATGGATTTTGCAAACAATCAATTGAAGGCAATTGTAGA
TTGGCCAAAAGAAAAGCGTGCAACTGAGGTAAAATTGCGTGCTGAAGTCGTGAAACAACTGCAAGATATCCTTGAACTACGGAGTCGAGATAGGGTAAAGCTTATGCGAA
TCATATTTCGTAGTGTGGATGACACACAGGGATTCTTGTCGGTCCCAACGAAACTTAAATTGGAGTATTGCAATATTCTCTTAGAAGAAAATGTTTGA
Protein sequenceShow/hide protein sequence
MRGPSCSGFGWNEEYQCIIVECELFDTKGLLHKSFPYYDDLSYVFSRDRATRARAETFADVGSNVPNSFNDGVPLGDVHDEDISTMYSQGVDMSPDDMLGTHGGRSSERR
NCSSGSKRKWCDQHNEAVEVIRNTMDFANNQLKAIVDWPKEKRATEVKLRAEVVKQLQDILELRSRDRVKLMRIIFRSVDDTQGFLSVPTKLKLEYCNILLEENV