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PI0006552 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006552
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionprotein RADIALIS-like 4
Genome locationchr03:1831247..1832525
RNA-Seq ExpressionPI0006552
SyntenyPI0006552
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008444713.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]1.4e-4499.01Show/hide
Query:  MASSTTSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKL
        MASSTTSSSSSS SSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKL
Subjt:  MASSTTSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKL

Query:  Q
        Q
Subjt:  Q

XP_022997502.1 protein RADIALIS-like 4 [Cucurbita maxima]4.1e-3685.86Show/hide
Query:  TSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY---SKHYSYNNFLDEEQRLKGLKLQ
        TSSSSSS SS WSSKQNK+FENALTVYDKDSPDRWQKLA +VGGKTA+EVKRHYEMLVEDVHNIETG+VPLPNY   SKH S N FLDEEQRLKGLKL+
Subjt:  TSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY---SKHYSYNNFLDEEQRLKGLKLQ

XP_023547022.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]1.8e-3685.86Show/hide
Query:  TSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYS---KHYSYNNFLDEEQRLKGLKLQ
        TSSSSSS SSSWSSKQNK+FENALTVYDKDSPDRWQ LA +VGGKTA+EVKRHYEMLVEDVHNIETG+VPLPNYS   KHYS N FLDEEQ LKGLKL+
Subjt:  TSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYS---KHYSYNNFLDEEQRLKGLKLQ

XP_031737271.1 protein RADIALIS-like 4 [Cucumis sativus]7.7e-4397.06Show/hide
Query:  MASSTTSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSY-NNFLDEEQRLKGLK
        MASSTTSSSSSS SSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSY NNF+DEEQRLKGLK
Subjt:  MASSTTSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSY-NNFLDEEQRLKGLK

Query:  LQ
        LQ
Subjt:  LQ

XP_038886301.1 protein RADIALIS-like 3 [Benincasa hispida]1.6e-4090.1Show/hide
Query:  MASSTTSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKL
        MASS +SSSSS  SSSWSSKQNKMFENALTVYDKDSPDRWQKLA A+GGKTA+EVK HY+MLVEDVHNIETG+VPLPNYSKHYSYNNFLDEEQRLKGLKL
Subjt:  MASSTTSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKL

Query:  Q
        Q
Subjt:  Q

TrEMBL top hitse value%identityAlignment
A0A0A0LNL9 SANT domain-containing protein2.5e-3996.84Show/hide
Query:  MASSTTSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSY-NNFLDEEQR
        MASSTTSSSSSS SSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSY NNF+DEEQR
Subjt:  MASSTTSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSY-NNFLDEEQR

A0A1S3BBR2 protein RADIALIS-like 46.8e-4599.01Show/hide
Query:  MASSTTSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKL
        MASSTTSSSSSS SSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKL
Subjt:  MASSTTSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKL

Query:  Q
        Q
Subjt:  Q

A0A5A7VFX7 Protein RADIALIS-like 41.6e-33100Show/hide
Query:  MFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQR
        MFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQR
Subjt:  MFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQR

A0A6J1K580 protein RADIALIS-like 42.0e-3685.86Show/hide
Query:  TSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY---SKHYSYNNFLDEEQRLKGLKLQ
        TSSSSSS SS WSSKQNK+FENALTVYDKDSPDRWQKLA +VGGKTA+EVKRHYEMLVEDVHNIETG+VPLPNY   SKH S N FLDEEQRLKGLKL+
Subjt:  TSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY---SKHYSYNNFLDEEQRLKGLKLQ

A0A6J1KQS6 protein RADIALIS-like 42.4e-3482.83Show/hide
Query:  TTSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY---SKHYSYNNFLDEEQRLKGLKL
        ++SSSSSS S+ WSSKQNK+FENALTVYDKDSPDRWQKLA AVGGKTA+EVKRHYEMLVEDVHNIE G++PLPNY   SK Y Y+NFLDEEQRLKGLKL
Subjt:  TTSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY---SKHYSYNNFLDEEQRLKGLKL

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 17.8e-2253.4Show/hide
Query:  MASSTTSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNN--FLDEEQRLKGL
        MASS+ SS S   S SW++KQNK FE AL  YD+D+P+RWQ +A+ VGGKT +EVKRHYE+LV+D+++IE G VP PNY       N     EE+R++ +
Subjt:  MASSTTSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNN--FLDEEQRLKGL

Query:  KLQ
        +LQ
Subjt:  KLQ

Q1A173 Protein RADIALIS-like 69.2e-2358.16Show/hide
Query:  SSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY----SKHYSYNNFLDEEQRLKGLKL
        +S+S S  S W+  QNKMFE AL VYDKD+PDRW  +A+AVGGKT +EVKRHY++LVED+ NIETG+VPLPNY    S   S N+F  + +++K LK+
Subjt:  SSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY----SKHYSYNNFLDEEQRLKGLKL

Q58FS3 Transcription factor RADIALIS5.6e-2052.13Show/hide
Query:  SSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKLQ
        +S+      WS+K+NK FE AL VYDKD+PDRW  +ARAV G+T +EVK+HYE+LVED+  IE+GKVP PNY    +  N   +E+R + LK++
Subjt:  SSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKLQ

Q8GW75 Protein RADIALIS-like 57.8e-2271.23Show/hide
Query:  SSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY
        +SSS S SSSW+SKQNKMFE AL VYDKD+PDRWQ +A+AVG K+A+EVKRHY++LVED+ NIE   VPLP Y
Subjt:  SSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY

Q9SIJ5 Protein RADIALIS-like 21.9e-2052.53Show/hide
Query:  TSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNN---FLDEEQRLKGLKLQ
        + S SS  S SW+ KQNK FE AL VYD+D+PDRW  +ARAVGGKT +E KR Y++LV D+ +IE G VP P+Y      +N     DEE+R++ +KLQ
Subjt:  TSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNN---FLDEEQRLKGLKLQ

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 55.6e-2371.23Show/hide
Query:  SSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY
        +SSS S SSSW+SKQNKMFE AL VYDKD+PDRWQ +A+AVG K+A+EVKRHY++LVED+ NIE   VPLP Y
Subjt:  SSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY

AT1G75250.1 RAD-like 67.3e-2360Show/hide
Query:  SSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDE
        +S+S S  S W+  QNKMFE AL VYDKD+PDRW  +A+AVGGKT +EVKRHY++LVED+ NIETG+VPLPNY    S +  +++
Subjt:  SSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDE

AT1G75250.2 RAD-like 66.6e-2458.16Show/hide
Query:  SSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY----SKHYSYNNFLDEEQRLKGLKL
        +S+S S  S W+  QNKMFE AL VYDKD+PDRW  +A+AVGGKT +EVKRHY++LVED+ NIETG+VPLPNY    S   S N+F  + +++K LK+
Subjt:  SSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY----SKHYSYNNFLDEEQRLKGLKL

AT2G21650.1 Homeodomain-like superfamily protein1.4e-2152.53Show/hide
Query:  TSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNN---FLDEEQRLKGLKLQ
        + S SS  S SW+ KQNK FE AL VYD+D+PDRW  +ARAVGGKT +E KR Y++LV D+ +IE G VP P+Y      +N     DEE+R++ +KLQ
Subjt:  TSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNN---FLDEEQRLKGLKLQ

AT4G39250.1 RAD-like 15.6e-2353.4Show/hide
Query:  MASSTTSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNN--FLDEEQRLKGL
        MASS+ SS S   S SW++KQNK FE AL  YD+D+P+RWQ +A+ VGGKT +EVKRHYE+LV+D+++IE G VP PNY       N     EE+R++ +
Subjt:  MASSTTSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNN--FLDEEQRLKGL

Query:  KLQ
        +LQ
Subjt:  KLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCATCTACTACTTCTTCTTCATCATCTTCATTATCTTCAAGCTGGAGTTCAAAGCAAAACAAAATGTTCGAAAATGCCCTTACGGTGTACGACAAGGACTCACC
CGACCGGTGGCAGAAGCTGGCAAGAGCGGTGGGTGGGAAGACGGCGGACGAAGTGAAGAGACACTATGAGATGCTGGTTGAGGACGTCCATAATATTGAGACTGGCAAAG
TTCCTTTGCCTAATTACTCTAAACATTATTCTTACAACAACTTTCTTGATGAAGAACAAAGATTGAAGGGCCTAAAGTTACAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCATCTACTACTTCTTCTTCATCATCTTCATTATCTTCAAGCTGGAGTTCAAAGCAAAACAAAATGTTCGAAAATGCCCTTACGGTGTACGACAAGGACTCACC
CGACCGGTGGCAGAAGCTGGCAAGAGCGGTGGGTGGGAAGACGGCGGACGAAGTGAAGAGACACTATGAGATGCTGGTTGAGGACGTCCATAATATTGAGACTGGCAAAG
TTCCTTTGCCTAATTACTCTAAACATTATTCTTACAACAACTTTCTTGATGAAGAACAAAGATTGAAGGGCCTAAAGTTACAATGA
Protein sequenceShow/hide protein sequence
MASSTTSSSSSSLSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKLQ