; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0006592 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006592
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr06:20722819..20723623
RNA-Seq ExpressionPI0006592
SyntenyPI0006592
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]1.6e-7055.88Show/hide
Query:  MSSKDNAFETANDVGMKPFTRGH--------------------------------FKKNQLSNEITSSSEQLSQKASEPNIMSVTMKDVGIDEEKIAKLE
        M+S+ N  +  +D+G +P TR                                   K+N   +E  S SE+ +++  +PNIMSV + DV   E+++A+LE
Subjt:  MSSKDNAFETANDVGMKPFTRGH--------------------------------FKKNQLSNEITSSSEQLSQKASEPNIMSVTMKDVGIDEEKIAKLE

Query:  NKVSMLMKAIKERECKIASLKSHIESHDAAELSQAPIAKDNDKGKTILQEK--QQPTSIALLSVQQLQDMITNSIRAQCGGPSQSSLLYSKPYTKRIDNL
         KV+MLMKA++ER+ +IA LK+HIES DAAE S     K+ +KGK I+QE   Q  TSIA LSVQQLQ+MI NSI+ Q GGP+Q+  LYSKPYTKRIDN+
Subjt:  NKVSMLMKAIKERECKIASLKSHIESHDAAELSQAPIAKDNDKGKTILQEK--QQPTSIALLSVQQLQDMITNSIRAQCGGPSQSSLLYSKPYTKRIDNL

Query:  TMSMGYQPPKFQQFDGRSNPRQHVAHFIETCETAGTRGDSLVKQFVRTLKRNAFDWYTDLESESIDSWEQLE
         M  GYQPPKFQQFDG+ NP+QHVAHFIETCETAGTRGD LVKQFVRTLK NAFDWYTDLE ESIDSWEQLE
Subjt:  TMSMGYQPPKFQQFDGRSNPRQHVAHFIETCETAGTRGDSLVKQFVRTLKRNAFDWYTDLESESIDSWEQLE

KAA0047735.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.0e-6955.51Show/hide
Query:  MSSKDNAFETANDVGMKPFTRGH--------------------------------FKKNQLSNEITSSSEQLSQKASEPNIMSVTMKDVGIDEEKIAKLE
        M+S+ N  +  +D+G +P TR                                   KKN   +E  SSS+  S++   PNIMSV + +V   E ++A+LE
Subjt:  MSSKDNAFETANDVGMKPFTRGH--------------------------------FKKNQLSNEITSSSEQLSQKASEPNIMSVTMKDVGIDEEKIAKLE

Query:  NKVSMLMKAIKERECKIASLKSHIESHDAAELSQAPIAKDNDKGKTILQEK--QQPTSIALLSVQQLQDMITNSIRAQCGGPSQSSLLYSKPYTKRIDNL
         KV+MLMK ++ER+ +IA LK+HIES DAAE S     K+ DKGK ++QE   Q  TSIA LSVQQLQ+MI +SI+ Q GGP+Q+  LYSKPYTKRIDNL
Subjt:  NKVSMLMKAIKERECKIASLKSHIESHDAAELSQAPIAKDNDKGKTILQEK--QQPTSIALLSVQQLQDMITNSIRAQCGGPSQSSLLYSKPYTKRIDNL

Query:  TMSMGYQPPKFQQFDGRSNPRQHVAHFIETCETAGTRGDSLVKQFVRTLKRNAFDWYTDLESESIDSWEQLE
         MS GYQPPKFQQFDG+ NP+QHVAHFIETCETAGTRGD LVKQFVRTLK NAFDWY DLE ESID+WEQLE
Subjt:  TMSMGYQPPKFQQFDGRSNPRQHVAHFIETCETAGTRGDSLVKQFVRTLKRNAFDWYTDLESESIDSWEQLE

KAA0058295.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.1e-6966.2Show/hide
Query:  KKNQLSNEITSSSEQLSQKASEPNIMSVTMKDVGIDEEKIAKLENKVSMLMKAIKERECKIASLKSHIESHDAAELSQAPIAKDNDKGKTILQEK--QQP
        K+N   +E  SSS+  S++ S PNIMSV + +V   E ++A+LE KV+MLMK ++ER+ +IA LK+HIES DAAE S   I K+ DKGK ++QE   Q  
Subjt:  KKNQLSNEITSSSEQLSQKASEPNIMSVTMKDVGIDEEKIAKLENKVSMLMKAIKERECKIASLKSHIESHDAAELSQAPIAKDNDKGKTILQEK--QQP

Query:  TSIALLSVQQLQDMITNSIRAQCGGPSQSSLLYSKPYTKRIDNLTMSMGYQPPKFQQFDGRSNPRQHVAHFIETCETAGTRGDSLVKQFVRTLKRNAFDW
        TSIA LSVQQLQ+MI +SI+ Q GGP+Q+  LYSKPYTKRIDNL M  GYQPPKFQQFDG+ NP+QHVAHFIETCETAGTRGD LVKQFVRTLK NAFDW
Subjt:  TSIALLSVQQLQDMITNSIRAQCGGPSQSSLLYSKPYTKRIDNLTMSMGYQPPKFQQFDGRSNPRQHVAHFIETCETAGTRGDSLVKQFVRTLKRNAFDW

Query:  YTDLESESIDSWEQLE
        Y DLE ESID+WEQLE
Subjt:  YTDLESESIDSWEQLE

TYK02263.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.5e-6854.04Show/hide
Query:  MSSKDNAFETANDVGMKPFTRGH--------------------------------FKKNQLSNEITSSSEQLSQKASEPNIMSVTMKDVGIDEEKIAKLE
        M+S+ N  +  +D+G +P TR                                   K+N   +E  S SE+ +++  +PNIMS+ + DV   E+++  LE
Subjt:  MSSKDNAFETANDVGMKPFTRGH--------------------------------FKKNQLSNEITSSSEQLSQKASEPNIMSVTMKDVGIDEEKIAKLE

Query:  NKVSMLMKAIKERECKIASLKSHIESHDAAELSQAPIAKDNDKGKTILQEK--QQPTSIALLSVQQLQDMITNSIRAQCGGPSQSSLLYSKPYTKRIDNL
         KV+MLMKA++ER+ +IA LK+HIESHDAAE S +   K+ +KGK I+QE   Q  TSIA LSVQQLQ+MI NSI+ Q GGP+++  LYSKPYTKRIDN+
Subjt:  NKVSMLMKAIKERECKIASLKSHIESHDAAELSQAPIAKDNDKGKTILQEK--QQPTSIALLSVQQLQDMITNSIRAQCGGPSQSSLLYSKPYTKRIDNL

Query:  TMSMGYQPPKFQQFDGRSNPRQHVAHFIETCETAGTRGDSLVKQFVRTLKRNAFDWYTDLESESIDSWEQLE
         M  GYQPPKFQQFDG+ NP+QHVA+FIETCET GTRGD LVKQFVRTLK NAFDWYTDLE ESIDSW+QLE
Subjt:  TMSMGYQPPKFQQFDGRSNPRQHVAHFIETCETAGTRGDSLVKQFVRTLKRNAFDWYTDLESESIDSWEQLE

TYK28990.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.4e-6955.88Show/hide
Query:  MSSKDNAFETANDVGMKPFTRGH--------------------------------FKKNQLSNEITSSSEQLSQKASEPNIMSVTMKDVGIDEEKIAKLE
        M+S+ N  +  +D+G +P TR                                   KKN   +E  S SE  S++ + PNIMSV + DV   E ++A+LE
Subjt:  MSSKDNAFETANDVGMKPFTRGH--------------------------------FKKNQLSNEITSSSEQLSQKASEPNIMSVTMKDVGIDEEKIAKLE

Query:  NKVSMLMKAIKERECKIASLKSHIESHDAAELSQAPIAKDNDKGKTILQEKQQPT--SIALLSVQQLQDMITNSIRAQCGGPSQSSLLYSKPYTKRIDNL
         KV+MLMK ++ER+ +IA LK+HIES DAAE S     K+ DKGKT++QE Q     SIA LSVQQLQ+MI NSI+ Q GGP+Q+  LYSKPYTKRIDNL
Subjt:  NKVSMLMKAIKERECKIASLKSHIESHDAAELSQAPIAKDNDKGKTILQEKQQPT--SIALLSVQQLQDMITNSIRAQCGGPSQSSLLYSKPYTKRIDNL

Query:  TMSMGYQPPKFQQFDGRSNPRQHVAHFIETCETAGTRGDSLVKQFVRTLKRNAFDWYTDLESESIDSWEQLE
         M  GYQPPK QQFDG+ NP+QHVAHFIETCETAGTRGD LVKQFVRTLK NAFDWY DLESESID+WEQLE
Subjt:  TMSMGYQPPKFQQFDGRSNPRQHVAHFIETCETAGTRGDSLVKQFVRTLKRNAFDWYTDLESESIDSWEQLE

TrEMBL top hitse value%identityAlignment
A0A5A7TZU9 Ribonuclease H8.0e-7155.88Show/hide
Query:  MSSKDNAFETANDVGMKPFTRGH--------------------------------FKKNQLSNEITSSSEQLSQKASEPNIMSVTMKDVGIDEEKIAKLE
        M+S+ N  +  +D+G +P TR                                   K+N   +E  S SE+ +++  +PNIMSV + DV   E+++A+LE
Subjt:  MSSKDNAFETANDVGMKPFTRGH--------------------------------FKKNQLSNEITSSSEQLSQKASEPNIMSVTMKDVGIDEEKIAKLE

Query:  NKVSMLMKAIKERECKIASLKSHIESHDAAELSQAPIAKDNDKGKTILQEK--QQPTSIALLSVQQLQDMITNSIRAQCGGPSQSSLLYSKPYTKRIDNL
         KV+MLMKA++ER+ +IA LK+HIES DAAE S     K+ +KGK I+QE   Q  TSIA LSVQQLQ+MI NSI+ Q GGP+Q+  LYSKPYTKRIDN+
Subjt:  NKVSMLMKAIKERECKIASLKSHIESHDAAELSQAPIAKDNDKGKTILQEK--QQPTSIALLSVQQLQDMITNSIRAQCGGPSQSSLLYSKPYTKRIDNL

Query:  TMSMGYQPPKFQQFDGRSNPRQHVAHFIETCETAGTRGDSLVKQFVRTLKRNAFDWYTDLESESIDSWEQLE
         M  GYQPPKFQQFDG+ NP+QHVAHFIETCETAGTRGD LVKQFVRTLK NAFDWYTDLE ESIDSWEQLE
Subjt:  TMSMGYQPPKFQQFDGRSNPRQHVAHFIETCETAGTRGDSLVKQFVRTLKRNAFDWYTDLESESIDSWEQLE

A0A5A7U259 Ty3-gypsy retrotransposon protein2.0e-6955.51Show/hide
Query:  MSSKDNAFETANDVGMKPFTRGH--------------------------------FKKNQLSNEITSSSEQLSQKASEPNIMSVTMKDVGIDEEKIAKLE
        M+S+ N  +  +D+G +P TR                                   KKN   +E  SSS+  S++   PNIMSV + +V   E ++A+LE
Subjt:  MSSKDNAFETANDVGMKPFTRGH--------------------------------FKKNQLSNEITSSSEQLSQKASEPNIMSVTMKDVGIDEEKIAKLE

Query:  NKVSMLMKAIKERECKIASLKSHIESHDAAELSQAPIAKDNDKGKTILQEK--QQPTSIALLSVQQLQDMITNSIRAQCGGPSQSSLLYSKPYTKRIDNL
         KV+MLMK ++ER+ +IA LK+HIES DAAE S     K+ DKGK ++QE   Q  TSIA LSVQQLQ+MI +SI+ Q GGP+Q+  LYSKPYTKRIDNL
Subjt:  NKVSMLMKAIKERECKIASLKSHIESHDAAELSQAPIAKDNDKGKTILQEK--QQPTSIALLSVQQLQDMITNSIRAQCGGPSQSSLLYSKPYTKRIDNL

Query:  TMSMGYQPPKFQQFDGRSNPRQHVAHFIETCETAGTRGDSLVKQFVRTLKRNAFDWYTDLESESIDSWEQLE
         MS GYQPPKFQQFDG+ NP+QHVAHFIETCETAGTRGD LVKQFVRTLK NAFDWY DLE ESID+WEQLE
Subjt:  TMSMGYQPPKFQQFDGRSNPRQHVAHFIETCETAGTRGDSLVKQFVRTLKRNAFDWYTDLESESIDSWEQLE

A0A5A7UXF0 Ty3-gypsy retrotransposon protein1.5e-6966.2Show/hide
Query:  KKNQLSNEITSSSEQLSQKASEPNIMSVTMKDVGIDEEKIAKLENKVSMLMKAIKERECKIASLKSHIESHDAAELSQAPIAKDNDKGKTILQEK--QQP
        K+N   +E  SSS+  S++ S PNIMSV + +V   E ++A+LE KV+MLMK ++ER+ +IA LK+HIES DAAE S   I K+ DKGK ++QE   Q  
Subjt:  KKNQLSNEITSSSEQLSQKASEPNIMSVTMKDVGIDEEKIAKLENKVSMLMKAIKERECKIASLKSHIESHDAAELSQAPIAKDNDKGKTILQEK--QQP

Query:  TSIALLSVQQLQDMITNSIRAQCGGPSQSSLLYSKPYTKRIDNLTMSMGYQPPKFQQFDGRSNPRQHVAHFIETCETAGTRGDSLVKQFVRTLKRNAFDW
        TSIA LSVQQLQ+MI +SI+ Q GGP+Q+  LYSKPYTKRIDNL M  GYQPPKFQQFDG+ NP+QHVAHFIETCETAGTRGD LVKQFVRTLK NAFDW
Subjt:  TSIALLSVQQLQDMITNSIRAQCGGPSQSSLLYSKPYTKRIDNLTMSMGYQPPKFQQFDGRSNPRQHVAHFIETCETAGTRGDSLVKQFVRTLKRNAFDW

Query:  YTDLESESIDSWEQLE
        Y DLE ESID+WEQLE
Subjt:  YTDLESESIDSWEQLE

A0A5D3BRH6 Ty3-gypsy retrotransposon protein7.4e-6954.04Show/hide
Query:  MSSKDNAFETANDVGMKPFTRGH--------------------------------FKKNQLSNEITSSSEQLSQKASEPNIMSVTMKDVGIDEEKIAKLE
        M+S+ N  +  +D+G +P TR                                   K+N   +E  S SE+ +++  +PNIMS+ + DV   E+++  LE
Subjt:  MSSKDNAFETANDVGMKPFTRGH--------------------------------FKKNQLSNEITSSSEQLSQKASEPNIMSVTMKDVGIDEEKIAKLE

Query:  NKVSMLMKAIKERECKIASLKSHIESHDAAELSQAPIAKDNDKGKTILQEK--QQPTSIALLSVQQLQDMITNSIRAQCGGPSQSSLLYSKPYTKRIDNL
         KV+MLMKA++ER+ +IA LK+HIESHDAAE S +   K+ +KGK I+QE   Q  TSIA LSVQQLQ+MI NSI+ Q GGP+++  LYSKPYTKRIDN+
Subjt:  NKVSMLMKAIKERECKIASLKSHIESHDAAELSQAPIAKDNDKGKTILQEK--QQPTSIALLSVQQLQDMITNSIRAQCGGPSQSSLLYSKPYTKRIDNL

Query:  TMSMGYQPPKFQQFDGRSNPRQHVAHFIETCETAGTRGDSLVKQFVRTLKRNAFDWYTDLESESIDSWEQLE
         M  GYQPPKFQQFDG+ NP+QHVA+FIETCET GTRGD LVKQFVRTLK NAFDWYTDLE ESIDSW+QLE
Subjt:  TMSMGYQPPKFQQFDGRSNPRQHVAHFIETCETAGTRGDSLVKQFVRTLKRNAFDWYTDLESESIDSWEQLE

A0A5D3E0F3 Ty3-gypsy retrotransposon protein1.1e-6955.88Show/hide
Query:  MSSKDNAFETANDVGMKPFTRGH--------------------------------FKKNQLSNEITSSSEQLSQKASEPNIMSVTMKDVGIDEEKIAKLE
        M+S+ N  +  +D+G +P TR                                   KKN   +E  S SE  S++ + PNIMSV + DV   E ++A+LE
Subjt:  MSSKDNAFETANDVGMKPFTRGH--------------------------------FKKNQLSNEITSSSEQLSQKASEPNIMSVTMKDVGIDEEKIAKLE

Query:  NKVSMLMKAIKERECKIASLKSHIESHDAAELSQAPIAKDNDKGKTILQEKQQPT--SIALLSVQQLQDMITNSIRAQCGGPSQSSLLYSKPYTKRIDNL
         KV+MLMK ++ER+ +IA LK+HIES DAAE S     K+ DKGKT++QE Q     SIA LSVQQLQ+MI NSI+ Q GGP+Q+  LYSKPYTKRIDNL
Subjt:  NKVSMLMKAIKERECKIASLKSHIESHDAAELSQAPIAKDNDKGKTILQEKQQPT--SIALLSVQQLQDMITNSIRAQCGGPSQSSLLYSKPYTKRIDNL

Query:  TMSMGYQPPKFQQFDGRSNPRQHVAHFIETCETAGTRGDSLVKQFVRTLKRNAFDWYTDLESESIDSWEQLE
         M  GYQPPK QQFDG+ NP+QHVAHFIETCETAGTRGD LVKQFVRTLK NAFDWY DLESESID+WEQLE
Subjt:  TMSMGYQPPKFQQFDGRSNPRQHVAHFIETCETAGTRGDSLVKQFVRTLKRNAFDWYTDLESESIDSWEQLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATCTAAAGACAACGCTTTCGAAACTGCTAATGATGTTGGCATGAAACCATTTACTCGTGGTCATTTCAAGAAGAATCAGCTATCTAATGAAATCACTTCATCTTC
CGAACAATTAAGCCAAAAAGCTTCAGAGCCCAATATAATGTCAGTAACGATGAAAGACGTTGGTATAGATGAAGAAAAAATTGCTAAACTAGAAAATAAGGTGAGTATGC
TAATGAAGGCAATTAAAGAGAGAGAGTGTAAAATCGCCTCTTTAAAGAGCCACATTGAAAGTCATGATGCTGCTGAATTAAGTCAAGCACCTATTGCCAAGGATAACGAC
AAAGGAAAGACAATCTTGCAAGAAAAACAACAACCAACTTCAATTGCTTTGTTATCAGTACAACAATTGCAAGATATGATCACAAACTCTATCAGAGCTCAATGTGGTGG
TCCTTCCCAAAGTTCTCTTTTATATTCTAAGCCATATACAAAGAGAATTGATAATTTAACGATGTCAATGGGGTACCAGCCACCTAAGTTTCAACAATTTGATGGGAGAA
GCAATCCAAGACAACATGTCGCTCATTTCATCGAAACATGTGAAACTGCTGGTACACGAGGGGACTCATTAGTCAAACAATTTGTTCGAACTTTGAAAAGAAATGCTTTT
GACTGGTACACTGACTTAGAGTCTGAATCAATTGATAGTTGGGAACAACTCGAAATGAAAATAAATCTAAGAAAACAAGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCATCTAAAGACAACGCTTTCGAAACTGCTAATGATGTTGGCATGAAACCATTTACTCGTGGTCATTTCAAGAAGAATCAGCTATCTAATGAAATCACTTCATCTTC
CGAACAATTAAGCCAAAAAGCTTCAGAGCCCAATATAATGTCAGTAACGATGAAAGACGTTGGTATAGATGAAGAAAAAATTGCTAAACTAGAAAATAAGGTGAGTATGC
TAATGAAGGCAATTAAAGAGAGAGAGTGTAAAATCGCCTCTTTAAAGAGCCACATTGAAAGTCATGATGCTGCTGAATTAAGTCAAGCACCTATTGCCAAGGATAACGAC
AAAGGAAAGACAATCTTGCAAGAAAAACAACAACCAACTTCAATTGCTTTGTTATCAGTACAACAATTGCAAGATATGATCACAAACTCTATCAGAGCTCAATGTGGTGG
TCCTTCCCAAAGTTCTCTTTTATATTCTAAGCCATATACAAAGAGAATTGATAATTTAACGATGTCAATGGGGTACCAGCCACCTAAGTTTCAACAATTTGATGGGAGAA
GCAATCCAAGACAACATGTCGCTCATTTCATCGAAACATGTGAAACTGCTGGTACACGAGGGGACTCATTAGTCAAACAATTTGTTCGAACTTTGAAAAGAAATGCTTTT
GACTGGTACACTGACTTAGAGTCTGAATCAATTGATAGTTGGGAACAACTCGAAATGAAAATAAATCTAAGAAAACAAGTGTAG
Protein sequenceShow/hide protein sequence
MSSKDNAFETANDVGMKPFTRGHFKKNQLSNEITSSSEQLSQKASEPNIMSVTMKDVGIDEEKIAKLENKVSMLMKAIKERECKIASLKSHIESHDAAELSQAPIAKDND
KGKTILQEKQQPTSIALLSVQQLQDMITNSIRAQCGGPSQSSLLYSKPYTKRIDNLTMSMGYQPPKFQQFDGRSNPRQHVAHFIETCETAGTRGDSLVKQFVRTLKRNAF
DWYTDLESESIDSWEQLEMKINLRKQV