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PI0006603 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006603
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr08:5098084..5100281
RNA-Seq ExpressionPI0006603
SyntenyPI0006603
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039579.1 protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa]4.3e-2177.14Show/hide
Query:  MDDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIRNNPDGQGPRR
        M+DKAP RPSDVI+YMKI+HGVNVSYDKAWRG +IALNSIRGT E SY MLSAFS ALIRNNP+     R
Subjt:  MDDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIRNNPDGQGPRR

KAA0046219.1 uncharacterized protein E6C27_scaffold284G00070 [Cucumis melo var. makuwa]1.4e-1960.71Show/hide
Query:  LIRNNPDGQGPRRPIGKIEEQMLYLVEVPDVVRFLESRIEEIFEKADAINAVTGRLDGLPINELLTRVDTLEAKAARTGNYERG
        ++  NP G+  R  + ++EEQMLYLV+VPD +RFLESR+EEI EK D I+AV GR++GLPI ELL RVDTLE    RTG++ERG
Subjt:  LIRNNPDGQGPRRPIGKIEEQMLYLVEVPDVVRFLESRIEEIFEKADAINAVTGRLDGLPINELLTRVDTLEAKAARTGNYERG

KAA0061274.1 uncharacterized protein E6C27_scaffold455G001170 [Cucumis melo var. makuwa]1.2e-2082.54Show/hide
Query:  MDDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIRNNP
        M+DKAP RPSDVI+YMKI+HGVN+SYDKAWRG +IALNSIRGT E SY MLSAFS ALIRNNP
Subjt:  MDDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIRNNP

TYK29863.1 MuDRA-like transposase [Cucumis melo var. makuwa]6.1e-2082.26Show/hide
Query:  DDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIRNNP
        +DKAP RPSDVI+YMKI+HGVN+SYDKAWRG +IALNSIRGT E SY MLSAFS ALIRNNP
Subjt:  DDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIRNNP

XP_016902696.1 PREDICTED: uncharacterized protein LOC107991824 [Cucumis melo]6.1e-2080.95Show/hide
Query:  MDDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIRNNP
        M+DKAP RPSDVI+YMKI+H VN+SYDKAWRG +IALNSIRGT E SY MLSAFS ALIRNNP
Subjt:  MDDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIRNNP

TrEMBL top hitse value%identityAlignment
A0A1S4E392 uncharacterized protein LOC1079918243.0e-2080.95Show/hide
Query:  MDDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIRNNP
        M+DKAP RPSDVI+YMKI+H VN+SYDKAWRG +IALNSIRGT E SY MLSAFS ALIRNNP
Subjt:  MDDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIRNNP

A0A5A7TEC9 Protein FAR1-RELATED SEQUENCE 2-like2.1e-2177.14Show/hide
Query:  MDDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIRNNPDGQGPRR
        M+DKAP RPSDVI+YMKI+HGVNVSYDKAWRG +IALNSIRGT E SY MLSAFS ALIRNNP+     R
Subjt:  MDDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIRNNPDGQGPRR

A0A5A7TY91 Retrotrans_gag domain-containing protein6.6e-2060.71Show/hide
Query:  LIRNNPDGQGPRRPIGKIEEQMLYLVEVPDVVRFLESRIEEIFEKADAINAVTGRLDGLPINELLTRVDTLEAKAARTGNYERG
        ++  NP G+  R  + ++EEQMLYLV+VPD +RFLESR+EEI EK D I+AV GR++GLPI ELL RVDTLE    RTG++ERG
Subjt:  LIRNNPDGQGPRRPIGKIEEQMLYLVEVPDVVRFLESRIEEIFEKADAINAVTGRLDGLPINELLTRVDTLEAKAARTGNYERG

A0A5A7V1Z6 CCHC-type domain-containing protein6.0e-2182.54Show/hide
Query:  MDDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIRNNP
        M+DKAP RPSDVI+YMKI+HGVN+SYDKAWRG +IALNSIRGT E SY MLSAFS ALIRNNP
Subjt:  MDDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIRNNP

A0A5D3E198 MuDRA-like transposase3.0e-2082.26Show/hide
Query:  DDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIRNNP
        +DKAP RPSDVI+YMKI+HGVN+SYDKAWRG +IALNSIRGT E SY MLSAFS ALIRNNP
Subjt:  DDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIRNNP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGACAAGGCTCCATTTCGTCCTTCTGACGTTATTGATTATATGAAGATTTATCATGGAGTGAATGTAAGCTATGACAAGGCTTGGAGAGGGTGTAAGATTGCTTT
GAATTCCATTAGGGGTACTTCGGAGGCTTCATATGTCATGTTGTCAGCATTCTCGATTGCACTGATCCGAAACAACCCAGATGGGCAAGGCCCACGCAGACCGATTGGTA
AGATCGAAGAGCAGATGCTCTACCTGGTGGAAGTTCCGGACGTCGTCCGCTTCTTGGAAAGTCGAATTGAAGAGATTTTCGAGAAAGCTGATGCTATTAATGCGGTAACC
GGTCGCCTCGACGGATTACCTATAAACGAGTTGTTAACAAGAGTTGACACTCTAGAGGCAAAGGCTGCAAGAACTGGTAACTACGAGCGTGGGATAGTTCAACGGGCTCT
GTTGCCCACATAG
mRNA sequenceShow/hide mRNA sequence
ATGGACGACAAGGCTCCATTTCGTCCTTCTGACGTTATTGATTATATGAAGATTTATCATGGAGTGAATGTAAGCTATGACAAGGCTTGGAGAGGGTGTAAGATTGCTTT
GAATTCCATTAGGGGTACTTCGGAGGCTTCATATGTCATGTTGTCAGCATTCTCGATTGCACTGATCCGAAACAACCCAGATGGGCAAGGCCCACGCAGACCGATTGGTA
AGATCGAAGAGCAGATGCTCTACCTGGTGGAAGTTCCGGACGTCGTCCGCTTCTTGGAAAGTCGAATTGAAGAGATTTTCGAGAAAGCTGATGCTATTAATGCGGTAACC
GGTCGCCTCGACGGATTACCTATAAACGAGTTGTTAACAAGAGTTGACACTCTAGAGGCAAAGGCTGCAAGAACTGGTAACTACGAGCGTGGGATAGTTCAACGGGCTCT
GTTGCCCACATAG
Protein sequenceShow/hide protein sequence
MDDKAPFRPSDVIDYMKIYHGVNVSYDKAWRGCKIALNSIRGTSEASYVMLSAFSIALIRNNPDGQGPRRPIGKIEEQMLYLVEVPDVVRFLESRIEEIFEKADAINAVT
GRLDGLPINELLTRVDTLEAKAARTGNYERGIVQRALLPT