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PI0006616 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006616
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase, RNA-dependent DNA polymerase
Genome locationchr12:16480275..16481485
RNA-Seq ExpressionPI0006616
SyntenyPI0006616
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067279.1 uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa]8.2e-3450Show/hide
Query:  PMVNFSNPSLNQLLNQLNIVKLERGNYLLWKILAMPIDKMLNNKTEHEVENEAQQAHTNSSYKLEEHLTGESSCPEKFLSVPGTGESNVSDTEAAADRAS
        P  +F+NP LNQ+LNQL  +KL+RGNYLLWK LA+PI K                     SYKL  HL GES C  K + +      ++ +      + +
Subjt:  PMVNFSNPSLNQLLNQLNIVKLERGNYLLWKILAMPIDKMLNNKTEHEVENEAQQAHTNSSYKLEEHLTGESSCPEKFLSVPGTGESNVSDTEAAADRAS

Query:  CSRVEILQVVNPEFEKWVTTDLLLLGWLYNFMTPEVTVQLMGFNNAKDLWEATQNLFG
         S    +  VNP++E+W+TTDLLLLGWLYN MTPEVT+QLMGF NAKDLWEATQ+LFG
Subjt:  CSRVEILQVVNPEFEKWVTTDLLLLGWLYNFMTPEVTVQLMGFNNAKDLWEATQNLFG

TYK02246.1 uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa]8.2e-3452.66Show/hide
Query:  MANVAPMV-----NFSNPSLNQLLNQLNIVKLERGNYLLWKILAMPIDKMLNNKTEHEVENEAQQAHTNSSYKLEEHLTGESSCPEKFLSVP-GTGESNV
        MAN   +V     NFSNP LNQLLNQL+ VKL+RGNYLLWK LA+PI K                     SYK E HLTGE+ CP KF++   G  +S +
Subjt:  MANVAPMV-----NFSNPSLNQLLNQLNIVKLERGNYLLWKILAMPIDKMLNNKTEHEVENEAQQAHTNSSYKLEEHLTGESSCPEKFLSVP-GTGESNV

Query:  SDTEAAADRASCSRVEILQVVNPEFEKWVTTDLLLLGWLYNFMTPEVTVQLMGFNNAKDLWEATQNLFG
          T  A D AS SR    + VNP+F++W+T+ LLLLGW+YN MT EV  QL GFN AKDLWEA Q+LFG
Subjt:  SDTEAAADRASCSRVEILQVVNPEFEKWVTTDLLLLGWLYNFMTPEVTVQLMGFNNAKDLWEATQNLFG

XP_016900937.1 PREDICTED: uncharacterized protein LOC107991116 [Cucumis melo]8.2e-3450Show/hide
Query:  PMVNFSNPSLNQLLNQLNIVKLERGNYLLWKILAMPIDKMLNNKTEHEVENEAQQAHTNSSYKLEEHLTGESSCPEKFLSVPGTGESNVSDTEAAADRAS
        P  +F+NP LNQ+LNQL  +KL+RGNYLLWK LA+PI K                     SYKL  HL GES C  K + +      ++ +      + +
Subjt:  PMVNFSNPSLNQLLNQLNIVKLERGNYLLWKILAMPIDKMLNNKTEHEVENEAQQAHTNSSYKLEEHLTGESSCPEKFLSVPGTGESNVSDTEAAADRAS

Query:  CSRVEILQVVNPEFEKWVTTDLLLLGWLYNFMTPEVTVQLMGFNNAKDLWEATQNLFG
         S    +  VNP++E+W+TTDLLLLGWLYN MTPEVT+QLMGF NAKDLWEATQ+LFG
Subjt:  CSRVEILQVVNPEFEKWVTTDLLLLGWLYNFMTPEVTVQLMGFNNAKDLWEATQNLFG

XP_016902203.1 PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo]1.0e-3150Show/hide
Query:  MANVAP--------MVNFSNPSLNQLLNQLNIVKLERGNYLLWKILAMPIDKMLNNKTEHEVENEAQQAHTNSSYKLEEHLTGESSCPEKFLSVPGTGES
        MAN  P           FSNP LNQ+LNQL  VKL+R NYLLWK LA+PI K                      YKLE HLT E+ CP  F  V     S
Subjt:  MANVAP--------MVNFSNPSLNQLLNQLNIVKLERGNYLLWKILAMPIDKMLNNKTEHEVENEAQQAHTNSSYKLEEHLTGESSCPEKFLSVPGTGES

Query:  NVSDTEAAADRASCSRVEIL-QVVNPEFEKWVTTDLLLLGWLYNFMTPEVTVQLMGFNNAKDLWEATQNLFG
        N + TE  AD    +   I  ++VNP FE+WVTTDLLLLGWLYN MTP+V +QLMGF N +DLW+ATQ+ FG
Subjt:  NVSDTEAAADRASCSRVEIL-QVVNPEFEKWVTTDLLLLGWLYNFMTPEVTVQLMGFNNAKDLWEATQNLFG

XP_031745012.1 uncharacterized protein LOC116405217 [Cucumis sativus]3.4e-3252.9Show/hide
Query:  NFSNPSLNQLLNQLNIVKLERGNYLLWKILAMPIDKMLNNKTEHEVENEAQQAHTNSSYKLEEHLTGESSCPEKFLSVPGTGESNVSDTEAAADRASCSR
        NFSNP LNQ+LNQL  VKL+RGNYLLW+ LA+PI K                     SYKL+ HLT E+ CP KF+  P  G S+ S T           
Subjt:  NFSNPSLNQLLNQLNIVKLERGNYLLWKILAMPIDKMLNNKTEHEVENEAQQAHTNSSYKLEEHLTGESSCPEKFLSVPGTGESNVSDTEAAADRASCSR

Query:  VEILQVVNPEFEKWVTTDLLLLGWLYNFMTPEVTVQLMGFNNAKDLWEATQNLFG
            + VNP+F++WVT DLLLLGW+YN MTPEV +QLMGFN AKDLWEA Q+LFG
Subjt:  VEILQVVNPEFEKWVTTDLLLLGWLYNFMTPEVTVQLMGFNNAKDLWEATQNLFG

TrEMBL top hitse value%identityAlignment
A0A1S4DY80 uncharacterized protein LOC1079911164.0e-3450Show/hide
Query:  PMVNFSNPSLNQLLNQLNIVKLERGNYLLWKILAMPIDKMLNNKTEHEVENEAQQAHTNSSYKLEEHLTGESSCPEKFLSVPGTGESNVSDTEAAADRAS
        P  +F+NP LNQ+LNQL  +KL+RGNYLLWK LA+PI K                     SYKL  HL GES C  K + +      ++ +      + +
Subjt:  PMVNFSNPSLNQLLNQLNIVKLERGNYLLWKILAMPIDKMLNNKTEHEVENEAQQAHTNSSYKLEEHLTGESSCPEKFLSVPGTGESNVSDTEAAADRAS

Query:  CSRVEILQVVNPEFEKWVTTDLLLLGWLYNFMTPEVTVQLMGFNNAKDLWEATQNLFG
         S    +  VNP++E+W+TTDLLLLGWLYN MTPEVT+QLMGF NAKDLWEATQ+LFG
Subjt:  CSRVEILQVVNPEFEKWVTTDLLLLGWLYNFMTPEVTVQLMGFNNAKDLWEATQNLFG

A0A1S4E1U6 uncharacterized protein LOC107991581 isoform X14.8e-3250Show/hide
Query:  MANVAP--------MVNFSNPSLNQLLNQLNIVKLERGNYLLWKILAMPIDKMLNNKTEHEVENEAQQAHTNSSYKLEEHLTGESSCPEKFLSVPGTGES
        MAN  P           FSNP LNQ+LNQL  VKL+R NYLLWK LA+PI K                      YKLE HLT E+ CP  F  V     S
Subjt:  MANVAP--------MVNFSNPSLNQLLNQLNIVKLERGNYLLWKILAMPIDKMLNNKTEHEVENEAQQAHTNSSYKLEEHLTGESSCPEKFLSVPGTGES

Query:  NVSDTEAAADRASCSRVEIL-QVVNPEFEKWVTTDLLLLGWLYNFMTPEVTVQLMGFNNAKDLWEATQNLFG
        N + TE  AD    +   I  ++VNP FE+WVTTDLLLLGWLYN MTP+V +QLMGF N +DLW+ATQ+ FG
Subjt:  NVSDTEAAADRASCSRVEIL-QVVNPEFEKWVTTDLLLLGWLYNFMTPEVTVQLMGFNNAKDLWEATQNLFG

A0A1S4E1U9 uncharacterized protein LOC107991581 isoform X44.8e-3250Show/hide
Query:  MANVAP--------MVNFSNPSLNQLLNQLNIVKLERGNYLLWKILAMPIDKMLNNKTEHEVENEAQQAHTNSSYKLEEHLTGESSCPEKFLSVPGTGES
        MAN  P           FSNP LNQ+LNQL  VKL+R NYLLWK LA+PI K                      YKLE HLT E+ CP  F  V     S
Subjt:  MANVAP--------MVNFSNPSLNQLLNQLNIVKLERGNYLLWKILAMPIDKMLNNKTEHEVENEAQQAHTNSSYKLEEHLTGESSCPEKFLSVPGTGES

Query:  NVSDTEAAADRASCSRVEIL-QVVNPEFEKWVTTDLLLLGWLYNFMTPEVTVQLMGFNNAKDLWEATQNLFG
        N + TE  AD    +   I  ++VNP FE+WVTTDLLLLGWLYN MTP+V +QLMGF N +DLW+ATQ+ FG
Subjt:  NVSDTEAAADRASCSRVEIL-QVVNPEFEKWVTTDLLLLGWLYNFMTPEVTVQLMGFNNAKDLWEATQNLFG

A0A5A7VPY0 Uncharacterized protein4.0e-3450Show/hide
Query:  PMVNFSNPSLNQLLNQLNIVKLERGNYLLWKILAMPIDKMLNNKTEHEVENEAQQAHTNSSYKLEEHLTGESSCPEKFLSVPGTGESNVSDTEAAADRAS
        P  +F+NP LNQ+LNQL  +KL+RGNYLLWK LA+PI K                     SYKL  HL GES C  K + +      ++ +      + +
Subjt:  PMVNFSNPSLNQLLNQLNIVKLERGNYLLWKILAMPIDKMLNNKTEHEVENEAQQAHTNSSYKLEEHLTGESSCPEKFLSVPGTGESNVSDTEAAADRAS

Query:  CSRVEILQVVNPEFEKWVTTDLLLLGWLYNFMTPEVTVQLMGFNNAKDLWEATQNLFG
         S    +  VNP++E+W+TTDLLLLGWLYN MTPEVT+QLMGF NAKDLWEATQ+LFG
Subjt:  CSRVEILQVVNPEFEKWVTTDLLLLGWLYNFMTPEVTVQLMGFNNAKDLWEATQNLFG

A0A5D3BVJ1 Uncharacterized protein4.0e-3452.66Show/hide
Query:  MANVAPMV-----NFSNPSLNQLLNQLNIVKLERGNYLLWKILAMPIDKMLNNKTEHEVENEAQQAHTNSSYKLEEHLTGESSCPEKFLSVP-GTGESNV
        MAN   +V     NFSNP LNQLLNQL+ VKL+RGNYLLWK LA+PI K                     SYK E HLTGE+ CP KF++   G  +S +
Subjt:  MANVAPMV-----NFSNPSLNQLLNQLNIVKLERGNYLLWKILAMPIDKMLNNKTEHEVENEAQQAHTNSSYKLEEHLTGESSCPEKFLSVP-GTGESNV

Query:  SDTEAAADRASCSRVEILQVVNPEFEKWVTTDLLLLGWLYNFMTPEVTVQLMGFNNAKDLWEATQNLFG
          T  A D AS SR    + VNP+F++W+T+ LLLLGW+YN MT EV  QL GFN AKDLWEA Q+LFG
Subjt:  SDTEAAADRASCSRVEILQVVNPEFEKWVTTDLLLLGWLYNFMTPEVTVQLMGFNNAKDLWEATQNLFG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAACGTCGCTCCTATGGTTAATTTCAGCAATCCATCTCTGAATCAGTTGTTAAATCAACTCAACATTGTCAAGTTAGAGCGAGGAAATTATTTGCTATGGAAGAT
CCTCGCCATGCCCATTGATAAGATGTTGAACAACAAAACAGAACATGAAGTAGAAAATGAGGCTCAACAAGCTCACACCAATTCAAGTTATAAATTGGAAGAACACCTCA
CCGGAGAGAGTTCGTGCCCTGAAAAATTTCTTTCTGTCCCTGGCACTGGAGAGTCAAATGTCTCTGATACTGAAGCTGCGGCTGATAGAGCATCATGTTCACGAGTAGAG
ATACTGCAAGTGGTAAACCCTGAGTTTGAGAAATGGGTTACCACTGATTTACTTCTGCTGGGATGGTTATATAATTTCATGACCCCAGAAGTGACTGTTCAGTTAATGGG
CTTCAACAATGCTAAAGATCTGTGGGAAGCAACACAAAATCTATTTGGGGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAACGTCGCTCCTATGGTTAATTTCAGCAATCCATCTCTGAATCAGTTGTTAAATCAACTCAACATTGTCAAGTTAGAGCGAGGAAATTATTTGCTATGGAAGAT
CCTCGCCATGCCCATTGATAAGATGTTGAACAACAAAACAGAACATGAAGTAGAAAATGAGGCTCAACAAGCTCACACCAATTCAAGTTATAAATTGGAAGAACACCTCA
CCGGAGAGAGTTCGTGCCCTGAAAAATTTCTTTCTGTCCCTGGCACTGGAGAGTCAAATGTCTCTGATACTGAAGCTGCGGCTGATAGAGCATCATGTTCACGAGTAGAG
ATACTGCAAGTGGTAAACCCTGAGTTTGAGAAATGGGTTACCACTGATTTACTTCTGCTGGGATGGTTATATAATTTCATGACCCCAGAAGTGACTGTTCAGTTAATGGG
CTTCAACAATGCTAAAGATCTGTGGGAAGCAACACAAAATCTATTTGGGGCTTAA
Protein sequenceShow/hide protein sequence
MANVAPMVNFSNPSLNQLLNQLNIVKLERGNYLLWKILAMPIDKMLNNKTEHEVENEAQQAHTNSSYKLEEHLTGESSCPEKFLSVPGTGESNVSDTEAAADRASCSRVE
ILQVVNPEFEKWVTTDLLLLGWLYNFMTPEVTVQLMGFNNAKDLWEATQNLFGA